Wall clock time and date at job start Tue Mar 31 2020 02:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41256 * 128.07459 * 2 1 4 4 N 1.30135 * 106.59051 * 179.97438 * 3 2 1 5 5 O 1.20890 * 111.97874 * 359.72245 * 4 3 2 6 6 C 1.34642 * 111.46670 * 0.45340 * 5 4 3 7 7 C 1.47511 * 126.94174 * 179.82675 * 6 5 4 8 8 O 1.21581 * 120.00160 * 179.68839 * 7 6 5 9 9 N 1.34782 * 119.99853 * 359.68022 * 7 6 5 10 10 C 1.46506 * 119.99697 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46798 * 185.98243 * 10 9 7 12 12 H 1.09005 * 109.99675 * 296.13299 * 11 10 9 13 13 C 1.54329 * 109.87971 * 175.04088 * 11 10 9 14 14 C 1.55280 * 103.00535 * 218.46650 * 13 11 10 15 15 C 1.54914 * 101.52455 * 35.35937 * 14 13 11 16 16 N 1.47021 * 109.88506 * 57.23011 * 11 10 9 17 17 C 1.36931 * 125.64798 * 298.33584 * 16 11 10 18 18 H 1.07998 * 120.00423 * 330.78728 * 17 16 11 19 19 C 1.38813 * 119.99972 * 150.77897 * 17 16 11 20 20 N 1.31624 * 119.99763 * 163.67808 * 19 17 16 21 21 Si 1.86803 * 120.00217 * 343.68337 * 19 17 16 22 22 H 1.48499 * 109.47056 * 84.81097 * 21 19 17 23 23 H 1.48498 * 109.47130 * 204.81091 * 21 19 17 24 24 H 1.48493 * 109.46778 * 324.81209 * 21 19 17 25 25 H 1.09001 * 109.47053 * 269.99879 * 1 2 3 26 26 H 1.09001 * 109.47256 * 29.99752 * 1 2 3 27 27 H 1.08998 * 109.46936 * 150.00072 * 1 2 3 28 28 H 1.07995 * 126.70952 * 0.04008 * 3 2 1 29 29 H 0.96994 * 120.00060 * 0.02562 * 9 7 6 30 30 H 1.09002 * 109.47070 * 65.97768 * 10 9 7 31 31 H 1.09005 * 109.46976 * 305.98132 * 10 9 7 32 32 H 1.08998 * 110.71984 * 336.74741 * 13 11 10 33 33 H 1.08996 * 110.71899 * 100.02362 * 13 11 10 34 34 H 1.08995 * 110.95536 * 277.33439 * 14 13 11 35 35 H 1.08997 * 111.09739 * 153.44722 * 14 13 11 36 36 H 1.08999 * 110.36230 * 204.23198 * 15 14 13 37 37 H 1.09003 * 110.36542 * 82.02751 * 15 14 13 38 38 H 0.97007 * 119.99752 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3781 1.1120 0.0000 4 7 3.5891 0.6354 0.0006 5 8 3.5995 -0.5735 0.0063 6 6 2.3508 -1.0770 0.0006 7 6 1.9695 -2.5020 0.0013 8 8 0.7953 -2.8172 0.0013 9 7 2.9230 -3.4547 0.0017 10 6 2.5443 -4.8700 0.0018 11 6 3.7983 -5.7334 0.1526 12 1 4.4511 -5.5964 -0.7095 13 6 3.4004 -7.2192 0.2789 14 6 4.4045 -7.7615 1.3319 15 6 4.5542 -6.5411 2.2742 16 7 4.5128 -5.3667 1.3841 17 6 5.0510 -4.1378 1.6586 18 1 5.3994 -3.5086 0.8529 19 6 5.1488 -3.7008 2.9725 20 7 5.9381 -2.6913 3.2732 21 14 4.1604 -4.5454 4.3139 22 1 4.9026 -5.7360 4.8004 23 1 3.9464 -3.6013 5.4400 24 1 2.8466 -4.9702 3.7675 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 2.0947 2.1541 0.0006 29 1 3.8598 -3.2033 0.0019 30 1 2.0465 -5.1130 -0.9370 31 1 1.8668 -5.0647 0.8333 32 1 2.3765 -7.3148 0.6399 33 1 3.5243 -7.7338 -0.6739 34 1 5.3572 -8.0157 0.8674 35 1 3.9904 -8.6178 1.8643 36 1 5.5070 -6.5838 2.8017 37 1 3.7288 -6.5074 2.9854 38 1 6.0067 -2.3861 4.1915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028238407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:26 Heat of formation + Delta-G solvation = 30.052466 kcal Electronic energy + Delta-G solvation = -22609.400000 eV Core-core repulsion = 19262.233009 eV Total energy + Delta-G solvation = -3347.166991 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.98180 -40.81003 -39.43341 -36.04721 -35.29739 -34.65312 -33.37383 -31.79506 -31.01116 -29.21166 -26.75930 -25.88918 -24.52944 -23.21701 -22.39796 -21.51264 -21.10765 -19.65154 -18.75218 -18.66389 -17.33881 -17.10988 -16.99424 -16.60950 -15.94544 -15.51022 -15.19534 -14.95341 -14.65033 -14.36045 -14.15600 -14.14684 -14.04284 -13.57015 -13.41310 -13.00843 -12.78588 -12.70109 -12.30192 -12.24739 -12.05406 -11.80050 -11.63114 -11.43615 -11.31610 -11.23062 -10.80447 -10.54069 -9.96184 -8.91617 -8.17842 -5.51194 -0.24914 1.10234 1.25109 1.34823 1.41190 1.63780 1.96175 2.31774 2.39943 3.12371 3.22817 3.30201 3.61639 3.76203 3.88474 4.01353 4.02848 4.18284 4.31472 4.35486 4.47318 4.67723 4.74530 4.75648 4.82262 4.82967 4.93911 5.05319 5.05603 5.16601 5.26543 5.30963 5.44507 5.51469 5.77265 6.11761 6.40114 6.78147 6.95321 7.07835 7.54718 8.16402 9.00834 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.006813 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.812108 B = 4109.014795 C = 4907.202889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.127 4.127 3 C -0.001 4.001 4 N -0.370 5.370 5 O 0.094 5.906 6 C -0.108 4.108 7 C 0.595 3.405 8 O -0.550 6.550 9 N -0.688 5.688 10 C 0.114 3.886 11 C 0.138 3.862 12 H 0.060 0.940 13 C -0.112 4.112 14 C -0.117 4.117 15 C 0.099 3.901 16 N -0.619 5.619 17 C -0.217 4.217 18 H 0.069 0.931 19 C -0.020 4.020 20 N -0.947 5.947 21 Si 0.935 3.065 22 H -0.273 1.273 23 H -0.320 1.320 24 H -0.274 1.274 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.241 0.759 29 H 0.414 0.586 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.036 0.964 37 H 0.013 0.987 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.858 -2.205 -8.773 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.132 4.132 3 C -0.179 4.179 4 N -0.074 5.074 5 O 0.026 5.974 6 C -0.173 4.173 7 C 0.379 3.621 8 O -0.431 6.431 9 N -0.340 5.340 10 C -0.011 4.011 11 C 0.032 3.968 12 H 0.078 0.922 13 C -0.150 4.150 14 C -0.155 4.155 15 C -0.026 4.026 16 N -0.345 5.345 17 C -0.346 4.346 18 H 0.087 0.913 19 C -0.216 4.216 20 N -0.592 5.592 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.249 1.249 24 H -0.200 1.200 25 H 0.101 0.899 26 H 0.127 0.873 27 H 0.093 0.907 28 H 0.257 0.743 29 H 0.254 0.746 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.054 0.946 37 H 0.030 0.970 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.327 -1.768 -8.651 12.844 hybrid contribution -0.294 0.215 1.416 1.462 sum -9.621 -1.553 -7.236 12.138 Atomic orbital electron populations 1.20375 0.84392 1.04901 1.03830 1.22096 1.00237 0.89696 1.01164 1.25672 0.86547 1.03515 1.02188 1.73784 1.24905 0.91314 1.17372 1.85035 1.28654 1.15859 1.67841 1.24258 0.85188 0.96794 1.11065 1.16699 0.85635 0.82248 0.77540 1.90733 1.17720 1.81276 1.53362 1.46252 1.10532 1.06876 1.70294 1.22108 0.98567 0.79107 1.01309 1.21633 0.90669 0.94595 0.89950 0.92185 1.22584 0.99473 0.92069 1.00898 1.22700 1.00307 0.95958 0.96576 1.22083 0.97749 0.88500 0.94254 1.44985 1.63960 1.07650 1.17872 1.18339 1.31401 0.92609 0.92278 0.91345 1.25704 0.99542 0.96945 0.99401 1.69902 1.39827 1.30459 1.19051 0.86093 0.80730 0.77125 0.79496 1.19925 1.24894 1.19984 0.89948 0.87283 0.90684 0.74282 0.74631 0.89431 0.93401 0.90428 0.87430 0.90218 0.88814 0.94577 0.96984 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 9.96 71.24 0.71 -1.07 16 2 C -0.13 -3.80 6.37 -19.45 -0.12 -3.93 16 3 C 0.00 -0.03 12.14 85.69 1.04 1.01 16 4 N -0.37 -13.51 12.04 -58.55 -0.71 -14.22 16 5 O 0.09 3.82 11.04 65.82 0.73 4.54 16 6 C -0.11 -4.02 7.29 24.38 0.18 -3.84 16 7 C 0.59 23.40 7.82 86.69 0.68 24.08 16 8 O -0.55 -22.30 15.10 -3.97 -0.06 -22.36 16 9 N -0.69 -26.84 4.82 -466.28 -2.25 -29.09 16 10 C 0.11 3.89 5.26 86.38 0.45 4.35 16 11 C 0.14 4.56 3.41 45.34 0.15 4.72 16 12 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 13 C -0.11 -2.74 6.48 31.83 0.21 -2.53 16 14 C -0.12 -3.15 7.10 32.03 0.23 -2.92 16 15 C 0.10 3.88 4.79 86.86 0.42 4.29 16 16 N -0.62 -26.76 2.81 -668.26 -1.88 -28.64 16 17 C -0.22 -11.40 8.44 84.03 0.71 -10.69 16 18 H 0.07 3.83 6.79 -2.91 -0.02 3.81 16 19 C -0.02 -1.13 5.47 84.86 0.46 -0.67 16 20 N -0.95 -58.51 13.97 21.65 0.30 -58.21 16 21 Si 0.93 47.53 24.38 68.60 1.67 49.20 16 22 H -0.27 -13.15 6.87 99.48 0.68 -12.46 16 23 H -0.32 -16.91 7.11 99.48 0.71 -16.21 16 24 H -0.27 -13.74 6.66 99.48 0.66 -13.08 16 25 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.95 6.73 -2.39 -0.02 1.93 16 28 H 0.24 3.99 8.06 -2.91 -0.02 3.96 16 29 H 0.41 17.32 5.43 -92.71 -0.50 16.82 16 30 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.05 1.82 8.06 -2.38 -0.02 1.80 16 32 H 0.08 1.80 7.80 -2.39 -0.02 1.78 16 33 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.04 1.55 7.48 -2.39 -0.02 1.53 16 37 H 0.01 0.52 5.23 -2.39 -0.01 0.51 16 38 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -70.60 310.19 3.44 -67.15 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.51 Total: 18.82 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 5.11 Total: 12.80 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -4.52 Total: -130.15 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.67 Total: -17.82 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.67 Total: 49.20 kcal Total: -70.60 3.44 -67.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028238407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.205 kcal (2) G-P(sol) polarization free energy of solvation -70.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds