Wall clock time and date at job start Tue Mar 31 2020 02:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35317 * 128.03927 * 2 1 4 4 O 1.34010 * 106.67434 * 179.97438 * 3 2 1 5 5 N 1.20907 * 111.84233 * 359.70646 * 4 3 2 6 6 C 1.30990 * 111.43974 * 0.48563 * 5 4 3 7 7 C 1.48331 * 126.93914 * 179.79810 * 6 5 4 8 8 O 1.21495 * 119.99874 * 179.40860 * 7 6 5 9 9 N 1.34773 * 120.00116 * 359.68633 * 7 6 5 10 10 C 1.46497 * 120.00320 * 179.72210 * 9 7 6 11 11 C 1.53000 * 109.47603 * 185.13467 * 10 9 7 12 12 H 1.09001 * 109.87529 * 303.57663 * 11 10 9 13 13 C 1.54326 * 109.87989 * 64.58976 * 11 10 9 14 14 C 1.55159 * 102.93921 * 141.61070 * 13 11 10 15 15 C 1.54906 * 101.58246 * 324.50047 * 14 13 11 16 16 N 1.47012 * 109.88463 * 182.40016 * 11 10 9 17 17 C 1.36938 * 125.64991 * 61.62054 * 16 11 10 18 18 H 1.07998 * 120.00142 * 14.76452 * 17 16 11 19 19 C 1.38809 * 120.00256 * 194.75846 * 17 16 11 20 20 N 1.31625 * 120.00213 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00099 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47352 * 60.00164 * 21 19 17 23 23 H 1.48505 * 109.46963 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47101 * 299.99661 * 21 19 17 25 25 H 1.09005 * 109.47294 * 270.02759 * 1 2 3 26 26 H 1.09005 * 109.47546 * 30.02617 * 1 2 3 27 27 H 1.09000 * 109.47167 * 150.03189 * 1 2 3 28 28 H 1.08006 * 126.66159 * 359.97438 * 3 2 1 29 29 H 0.97002 * 119.99951 * 359.72365 * 9 7 6 30 30 H 1.08993 * 109.47422 * 305.14022 * 10 9 7 31 31 H 1.09004 * 109.46759 * 65.13743 * 10 9 7 32 32 H 1.08997 * 110.72289 * 259.97912 * 13 11 10 33 33 H 1.08996 * 110.72135 * 23.25030 * 13 11 10 34 34 H 1.09006 * 111.00194 * 82.57542 * 14 13 11 35 35 H 1.09003 * 110.99918 * 206.42426 * 14 13 11 36 36 H 1.09000 * 110.36187 * 155.85022 * 15 14 13 37 37 H 1.09004 * 110.36401 * 278.05797 * 15 14 13 38 38 H 0.96997 * 120.00510 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5775 0.0006 5 7 3.5989 -0.6315 0.0067 6 6 2.3837 -1.1205 0.0006 7 6 1.9992 -2.5531 0.0009 8 8 0.8256 -2.8671 0.0057 9 7 2.9519 -3.5064 0.0015 10 6 2.5723 -4.9214 0.0079 11 6 3.8281 -5.7859 0.1364 12 1 4.5238 -5.5507 -0.6691 13 6 4.5014 -5.5336 1.5019 14 6 4.9876 -6.9476 1.9161 15 6 3.8523 -7.8424 1.3591 16 7 3.4627 -7.2090 0.0861 17 6 2.8600 -7.8415 -0.9683 18 1 2.8273 -7.3648 -1.9369 19 6 2.2910 -9.0953 -0.7924 20 7 2.3304 -9.6762 0.3881 21 14 1.4693 -9.9584 -2.2310 22 1 2.4610 -10.1637 -3.3170 23 1 0.9440 -11.2737 -1.7845 24 1 0.3492 -9.1237 -2.7347 25 1 -0.3634 0.0005 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8903 -0.5133 28 1 2.0558 2.1075 -0.0004 29 1 3.8889 -3.2557 -0.0023 30 1 1.9094 -5.1159 0.8510 31 1 2.0579 -5.1637 -0.9221 32 1 5.3449 -4.8514 1.3958 33 1 3.7801 -5.1475 2.2221 34 1 5.9407 -7.1868 1.4443 35 1 5.0574 -7.0347 3.0004 36 1 4.2183 -8.8539 1.1832 37 1 3.0093 -7.8594 2.0499 38 1 1.9331 -10.5525 0.5110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028247447.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:06 Heat of formation + Delta-G solvation = 46.230439 kcal Electronic energy + Delta-G solvation = -21642.569089 eV Core-core repulsion = 18296.103628 eV Total energy + Delta-G solvation = -3346.465461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.24422 -39.47943 -37.64843 -34.87265 -34.39409 -32.63617 -32.33785 -29.71606 -28.83258 -28.25050 -25.46978 -24.52862 -23.23260 -21.81163 -20.63321 -20.13172 -19.61936 -18.33422 -17.93667 -16.86259 -16.34877 -15.87078 -15.02525 -14.80381 -14.62609 -14.21235 -13.84963 -13.53175 -13.43347 -13.26345 -13.05961 -12.53769 -12.11221 -11.89762 -11.78771 -11.52706 -11.34581 -10.96089 -10.78490 -10.42270 -10.26922 -10.18428 -10.09407 -9.89445 -9.81967 -9.70725 -9.64126 -8.77045 -8.59543 -6.86123 -5.78198 -3.15289 1.02812 1.52153 2.88690 3.15119 3.24747 3.40341 3.44802 3.45694 3.88931 4.43954 4.52042 4.68463 4.90792 5.24101 5.31658 5.38878 5.45050 5.47146 5.51397 5.60826 5.63481 5.79895 6.02604 6.08162 6.11406 6.23937 6.44265 6.49700 6.55302 6.66591 6.76039 7.01807 7.49737 7.56345 7.60294 7.77574 7.88657 8.22775 8.27584 9.15719 9.76131 10.43576 11.33714 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023157 B = 0.004114 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.869747 B = 6804.828708 C = 7594.308377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.151 4.151 3 C -0.072 4.072 4 O 0.121 5.879 5 N -0.332 5.332 6 C -0.023 4.023 7 C 0.589 3.411 8 O -0.522 6.522 9 N -0.704 5.704 10 C 0.108 3.892 11 C 0.152 3.848 12 H 0.039 0.961 13 C -0.127 4.127 14 C -0.148 4.148 15 C 0.172 3.828 16 N -0.588 5.588 17 C -0.237 4.237 18 H 0.075 0.925 19 C 0.001 3.999 20 N -0.915 5.915 21 Si 0.911 3.089 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.283 1.283 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.222 0.778 29 H 0.402 0.598 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.026 0.974 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.839 20.153 1.479 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.155 4.155 3 C -0.153 4.153 4 O 0.046 5.954 5 N -0.033 5.033 6 C -0.183 4.183 7 C 0.372 3.628 8 O -0.397 6.397 9 N -0.355 5.355 10 C -0.017 4.017 11 C 0.043 3.957 12 H 0.056 0.944 13 C -0.165 4.165 14 C -0.187 4.187 15 C 0.048 3.952 16 N -0.312 5.312 17 C -0.365 4.365 18 H 0.093 0.907 19 C -0.197 4.197 20 N -0.561 5.561 21 Si 0.741 3.259 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.209 1.209 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.239 0.761 29 H 0.236 0.764 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.075 18.990 1.458 19.159 hybrid contribution -0.885 -0.050 -0.714 1.138 sum 1.190 18.941 0.744 18.993 Atomic orbital electron populations 1.20229 0.86584 1.03904 1.03254 1.21401 0.99181 0.90163 1.04800 1.25759 0.82493 1.01241 1.05809 1.84765 1.29440 1.15314 1.65890 1.74168 1.21712 0.91549 1.15861 1.23671 0.89381 0.97571 1.07678 1.16918 0.85937 0.82156 0.77808 1.90788 1.17445 1.81511 1.49980 1.46054 1.09337 1.07366 1.72780 1.22386 1.00232 0.76183 1.02874 1.21131 0.92630 0.86575 0.95344 0.94378 1.22614 0.99239 0.97613 0.97050 1.23009 1.00239 0.95992 0.99448 1.21455 0.92085 0.95586 0.86102 1.44477 1.70332 1.01017 1.15362 1.18945 1.29336 0.99892 0.88350 0.90689 1.24918 0.99648 0.98283 0.96845 1.69928 1.48712 1.16209 1.21231 0.86222 0.79536 0.78746 0.81399 1.21032 1.21515 1.20929 0.90528 0.91119 0.89280 0.76142 0.76392 0.91140 0.91080 0.92317 0.91857 0.92247 0.92294 0.90936 0.95545 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.01 36.00 0.36 -0.43 16 2 C -0.15 -1.67 6.34 -104.12 -0.66 -2.33 16 3 C -0.07 -0.57 12.24 29.69 0.36 -0.20 16 4 O 0.12 1.25 11.18 17.26 0.19 1.44 16 5 N -0.33 -4.33 11.84 33.30 0.39 -3.93 16 6 C -0.02 -0.33 7.19 -82.53 -0.59 -0.92 16 7 C 0.59 10.04 7.85 -12.11 -0.10 9.95 16 8 O -0.52 -10.34 15.34 5.37 0.08 -10.26 16 9 N -0.70 -11.66 5.32 -61.10 -0.33 -11.98 16 10 C 0.11 2.13 5.07 -4.04 -0.02 2.11 16 11 C 0.15 3.07 3.22 -66.96 -0.22 2.85 16 12 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 13 C -0.13 -2.20 6.10 -24.89 -0.15 -2.35 16 14 C -0.15 -2.76 7.08 -24.58 -0.17 -2.94 16 15 C 0.17 4.14 5.41 -2.53 -0.01 4.12 16 16 N -0.59 -14.70 3.13 -162.58 -0.51 -15.21 16 17 C -0.24 -6.51 9.76 -15.06 -0.15 -6.66 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C 0.00 0.02 5.47 -17.43 -0.10 -0.08 16 20 N -0.92 -26.63 10.58 55.49 0.59 -26.05 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 1.08 6.89 -51.93 -0.36 0.72 16 28 H 0.22 0.61 8.06 -52.48 -0.42 0.19 16 29 H 0.40 5.86 8.10 -40.82 -0.33 5.53 16 30 H 0.07 1.53 8.08 -51.93 -0.42 1.11 16 31 H 0.07 1.56 7.92 -51.93 -0.41 1.15 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.09 7.81 -51.93 -0.41 0.68 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.93 6.94 -51.93 -0.36 1.57 16 37 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 320.84 15.07 4.84 4.84 Total: -1.00 -32.02 320.84 -6.42 -38.44 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.21 Total: 2.54 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -1.44 Total: 3.12 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.15 Total: -57.18 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.28 Total: -8.82 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.02 -6.42 -38.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028247447.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.667 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds