Wall clock time and date at job start Tue Mar 31 2020 02:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34258 * 126.52610 * 2 1 4 4 C 1.34052 * 108.22713 * 180.14708 * 3 2 1 5 5 N 1.29935 * 109.24422 * 359.59928 * 4 3 2 6 6 C 1.36070 * 108.47497 * 0.24561 * 5 4 3 7 7 C 1.47424 * 126.44621 * 179.97438 * 6 5 4 8 8 O 1.21618 * 119.99817 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00363 * 0.02669 * 7 6 5 10 10 C 1.46494 * 120.00117 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47291 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.63949 * 305.70155 * 11 10 9 13 13 C 1.55157 * 110.72464 * 182.55376 * 11 10 9 14 14 C 1.54907 * 101.58422 * 206.13668 * 13 11 10 15 15 N 1.47421 * 104.83267 * 37.00770 * 14 13 11 16 16 C 1.36940 * 125.64861 * 155.90246 * 15 14 13 17 17 H 1.08000 * 120.00037 * 179.97438 * 16 15 14 18 18 C 1.38810 * 119.99650 * 359.97438 * 16 15 14 19 19 N 1.31620 * 120.00364 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99812 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47079 * 90.00012 * 20 18 16 22 22 H 1.48493 * 109.46812 * 209.99846 * 20 18 16 23 23 H 1.48496 * 109.47020 * 330.00246 * 20 18 16 24 24 C 1.47323 * 108.73761 * 335.71769 * 15 14 13 25 25 H 1.08998 * 109.46924 * 270.28975 * 1 2 3 26 26 H 1.08994 * 109.46893 * 30.29052 * 1 2 3 27 27 H 1.08999 * 109.46611 * 150.28939 * 1 2 3 28 28 H 1.08002 * 125.38147 * 179.87136 * 4 3 2 29 29 H 0.97007 * 119.99783 * 359.97438 * 9 7 6 30 30 H 1.08998 * 109.47004 * 299.99305 * 10 9 7 31 31 H 1.08996 * 109.47730 * 59.99514 * 10 9 7 32 32 H 1.08994 * 111.00169 * 324.21292 * 13 11 10 33 33 H 1.08997 * 110.99944 * 88.01959 * 13 11 10 34 34 H 1.08998 * 110.36525 * 155.85078 * 14 13 11 35 35 H 1.09003 * 110.36434 * 278.06348 * 14 13 11 36 36 H 0.96994 * 120.00285 * 180.02562 * 19 18 16 37 37 H 1.08999 * 110.06110 * 241.86799 * 24 15 14 38 38 H 1.09003 * 109.84603 * 120.60855 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 -0.0033 5 7 3.6003 -0.6412 0.0033 6 6 2.3170 -1.0936 0.0055 7 6 1.8854 -2.5032 0.0121 8 8 0.7002 -2.7763 0.0130 9 7 2.8040 -3.4893 0.0171 10 6 2.3751 -4.8901 0.0230 11 6 3.6050 -5.8001 0.0272 12 1 4.2681 -5.5538 -0.8020 13 6 3.1840 -7.2924 -0.0311 14 6 4.3925 -7.9833 0.6485 15 7 4.7999 -7.0598 1.7230 16 6 5.4840 -7.4073 2.8573 17 1 5.7371 -6.6531 3.5877 18 6 5.8520 -8.7290 3.0683 19 7 5.5431 -9.6483 2.1784 20 14 6.7858 -9.2030 4.6152 21 1 5.8209 -9.5608 5.6858 22 1 7.6606 -10.3680 4.3278 23 1 7.6180 -8.0571 5.0617 24 6 4.3535 -5.7002 1.3731 25 1 -0.3633 0.0052 1.0276 26 1 -0.3633 0.8873 -0.5183 27 1 -0.3632 -0.8926 -0.5093 28 1 4.4490 1.2977 -0.0061 29 1 3.7493 -3.2716 0.0160 30 1 1.7769 -5.0830 0.9135 31 1 1.7779 -5.0910 -0.8663 32 1 2.2680 -7.4622 0.5346 33 1 3.0714 -7.6264 -1.0624 34 1 4.0938 -8.9443 1.0672 35 1 5.2041 -8.1175 -0.0666 36 1 5.7999 -10.5719 2.3260 37 1 5.2140 -5.0389 1.2706 38 1 3.6819 -5.3214 2.1436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028427875.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:36 Heat of formation + Delta-G solvation = 8.075679 kcal Electronic energy + Delta-G solvation = -21286.728875 eV Core-core repulsion = 17938.608899 eV Total energy + Delta-G solvation = -3348.119976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.67058 -39.54081 -37.60237 -35.09989 -34.64135 -32.62937 -32.45151 -29.87020 -28.48883 -27.45764 -25.60627 -24.25878 -23.16759 -21.93362 -20.73269 -19.99563 -19.64630 -18.22289 -17.14361 -16.83333 -16.25225 -16.04243 -15.37452 -14.89577 -14.73003 -14.43280 -14.13945 -13.63040 -13.43321 -13.29830 -12.85164 -12.68784 -12.47254 -11.75449 -11.71123 -11.57023 -11.45737 -11.02690 -10.93093 -10.78029 -10.44640 -10.17294 -10.05187 -9.95892 -9.75700 -9.49564 -9.23848 -8.87761 -8.62765 -6.80790 -5.63068 -3.04504 0.88427 1.84903 2.30890 3.15754 3.25022 3.41743 3.46526 3.48604 3.83883 4.38528 4.50639 4.67440 4.91569 5.11813 5.18834 5.20025 5.28576 5.43672 5.54981 5.57774 5.70918 5.75381 5.84556 5.91876 6.08871 6.13163 6.37376 6.44919 6.59767 6.61132 6.75493 6.94269 7.16391 7.53819 7.60029 7.65033 7.87795 8.17546 8.38756 9.24714 9.85371 10.50553 11.40976 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028301 B = 0.003375 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.128456 B = 8293.149481 C = 8844.050597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.041 3.959 3 O -0.202 6.202 4 C 0.173 3.827 5 N -0.461 5.461 6 C -0.076 4.076 7 C 0.599 3.401 8 O -0.541 6.541 9 N -0.705 5.705 10 C 0.132 3.868 11 C -0.115 4.115 12 H 0.076 0.924 13 C -0.134 4.134 14 C 0.152 3.848 15 N -0.605 5.605 16 C -0.222 4.222 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.141 3.859 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.255 0.745 29 H 0.410 0.590 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.012 0.988 36 H 0.252 0.748 37 H 0.020 0.980 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 19.590 -7.148 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.016 4.016 3 O -0.089 6.089 4 C -0.055 4.055 5 N -0.190 5.190 6 C -0.196 4.196 7 C 0.384 3.616 8 O -0.419 6.419 9 N -0.355 5.355 10 C 0.009 3.991 11 C -0.134 4.134 12 H 0.095 0.905 13 C -0.174 4.174 14 C 0.027 3.973 15 N -0.331 5.331 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.208 4.208 19 N -0.572 5.572 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.015 3.985 25 H 0.110 0.890 26 H 0.098 0.902 27 H 0.131 0.869 28 H 0.271 0.729 29 H 0.246 0.754 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.030 0.970 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.755 18.809 -7.034 21.527 hybrid contribution 0.811 0.447 0.777 1.209 sum -6.944 19.256 -6.257 21.405 Atomic orbital electron populations 1.20603 0.82559 1.05381 1.04752 1.23767 0.95225 0.83346 0.99250 1.84373 1.18630 1.36311 1.69539 1.28021 0.85231 0.91236 1.01054 1.70763 1.21773 1.10187 1.16261 1.21563 0.88805 0.95759 1.13453 1.16700 0.85557 0.82563 0.76744 1.90773 1.16262 1.83318 1.51552 1.45893 1.10320 1.06271 1.73026 1.21535 0.97080 0.78224 1.02278 1.22448 0.95603 0.96109 0.99257 0.90515 1.23003 1.01068 0.93134 1.00172 1.21924 0.90749 0.95967 0.88625 1.44584 1.65945 1.01579 1.21005 1.19091 1.27291 0.92958 0.95663 0.90549 1.24784 1.01473 0.95827 0.98667 1.69793 1.51590 1.01072 1.34718 0.86069 0.79247 0.77809 0.82365 1.21600 1.21661 1.20765 1.21389 0.95335 0.89150 0.92665 0.88958 0.90197 0.86872 0.72910 0.75428 0.90946 0.91369 0.91802 0.92090 0.87514 0.97036 0.93756 0.96216 0.95751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.88 36.01 0.36 -0.28 16 2 C 0.04 0.44 7.44 -35.08 -0.26 0.18 16 3 O -0.20 -1.91 10.73 6.50 0.07 -1.84 16 4 C 0.17 1.45 13.19 51.96 0.69 2.13 16 5 N -0.46 -5.56 11.06 -11.48 -0.13 -5.68 16 6 C -0.08 -1.00 6.99 -83.02 -0.58 -1.58 16 7 C 0.60 8.97 7.81 -12.52 -0.10 8.87 16 8 O -0.54 -8.95 14.80 5.26 0.08 -8.87 16 9 N -0.71 -10.30 5.43 -61.39 -0.33 -10.64 16 10 C 0.13 2.02 5.00 -4.04 -0.02 2.00 16 11 C -0.11 -1.98 2.98 -88.78 -0.26 -2.24 16 12 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.13 -2.53 6.54 -24.58 -0.16 -2.69 16 14 C 0.15 3.72 5.89 -2.53 -0.01 3.70 16 15 N -0.60 -15.76 3.40 -169.83 -0.58 -16.34 16 16 C -0.22 -6.29 10.28 -15.06 -0.15 -6.45 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 19 N -0.92 -27.14 10.09 55.49 0.56 -26.58 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.14 2.96 6.67 -2.90 -0.02 2.94 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.11 1.09 6.48 -51.93 -0.34 0.75 16 28 H 0.26 0.76 8.06 -52.49 -0.42 0.33 16 29 H 0.41 5.75 8.13 -40.82 -0.33 5.42 16 30 H 0.07 1.20 8.01 -51.93 -0.42 0.78 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.11 2.93 5.87 -51.93 -0.30 2.63 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.53 7.73 -51.93 -0.40 0.12 16 LS Contribution 319.98 15.07 4.82 4.82 Total: -1.00 -33.55 319.98 -6.30 -39.85 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.14 Total: 1.82 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -0.63 Total: 6.16 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.48 Total: -59.24 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.15 Total: -10.71 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.55 -6.30 -39.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028427875.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.924 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds