Wall clock time and date at job start Tue Mar 31 2020 02:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33691 * 126.27363 * 2 1 4 4 C 1.30612 * 108.99439 * 179.97438 * 3 2 1 5 5 O 1.33665 * 109.15445 * 0.24682 * 4 3 2 6 6 C 1.35346 * 107.68686 * 359.60483 * 5 4 3 7 7 C 1.46712 * 126.64721 * 180.14423 * 6 5 4 8 8 O 1.21681 * 120.00292 * 180.28749 * 7 6 5 9 9 N 1.34784 * 120.00026 * 0.28364 * 7 6 5 10 10 C 1.46499 * 120.00175 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46966 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.63786 * 305.70019 * 11 10 9 13 13 C 1.55158 * 110.71748 * 182.55898 * 11 10 9 14 14 C 1.54911 * 101.58045 * 206.13447 * 13 11 10 15 15 N 1.47422 * 104.83207 * 37.00949 * 14 13 11 16 16 C 1.36937 * 125.65009 * 155.90677 * 15 14 13 17 17 H 1.08001 * 119.99858 * 342.05150 * 16 15 14 18 18 C 1.38808 * 120.00344 * 162.05140 * 16 15 14 19 19 N 1.31615 * 120.00107 * 156.24680 * 18 16 15 20 20 Si 1.86799 * 119.99839 * 336.24410 * 18 16 15 21 21 H 1.48502 * 109.47354 * 84.66939 * 20 18 16 22 22 H 1.48502 * 109.47263 * 204.67263 * 20 18 16 23 23 H 1.48507 * 109.47423 * 324.66969 * 20 18 16 24 24 C 1.47322 * 108.73635 * 335.71551 * 15 14 13 25 25 H 1.09002 * 109.46971 * 90.02451 * 1 2 3 26 26 H 1.09003 * 109.47102 * 210.01976 * 1 2 3 27 27 H 1.08992 * 109.47101 * 330.02415 * 1 2 3 28 28 H 1.07999 * 125.42383 * 179.97438 * 4 3 2 29 29 H 0.96996 * 119.99780 * 0.02562 * 9 7 6 30 30 H 1.09002 * 109.47075 * 300.00246 * 10 9 7 31 31 H 1.08995 * 109.46974 * 59.99935 * 10 9 7 32 32 H 1.09007 * 111.00440 * 324.20513 * 13 11 10 33 33 H 1.08997 * 111.00445 * 88.02175 * 13 11 10 34 34 H 1.09000 * 110.36691 * 155.84740 * 14 13 11 35 35 H 1.08995 * 110.36496 * 278.06065 * 14 13 11 36 36 H 0.97005 * 119.99824 * 180.02562 * 19 18 16 37 37 H 1.09002 * 110.06282 * 241.87373 * 24 15 14 38 38 H 1.09004 * 109.84569 * 120.61114 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 0.0006 5 8 3.5890 -0.6461 -0.0045 6 6 2.3136 -1.0993 0.0005 7 6 1.8826 -2.5017 0.0007 8 8 0.6966 -2.7737 0.0003 9 7 2.8004 -3.4888 0.0012 10 6 2.3701 -4.8891 0.0008 11 6 3.5992 -5.8003 0.0021 12 1 4.2632 -5.5510 -0.8255 13 6 3.1767 -7.2919 -0.0631 14 6 4.3840 -7.9869 0.6146 15 7 4.7913 -7.0686 1.6934 16 6 5.4741 -7.4216 2.8267 17 1 5.5092 -8.4558 3.1359 18 6 6.1212 -6.4503 3.5782 19 7 6.3668 -6.6605 4.8540 20 14 6.6433 -4.8449 2.7787 21 1 5.5017 -3.8952 2.7833 22 1 7.7773 -4.2595 3.5381 23 1 7.0663 -5.1035 1.3788 24 6 4.3466 -5.7070 1.3490 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8901 0.5134 28 1 4.4044 1.3443 0.0003 29 1 3.7458 -3.2719 0.0018 30 1 1.7716 -5.0856 0.8903 31 1 1.7728 -5.0853 -0.8896 32 1 2.2600 -7.4633 0.5012 33 1 3.0647 -7.6214 -1.0960 34 1 4.0841 -8.9495 1.0288 35 1 5.1960 -8.1188 -0.1004 36 1 6.8186 -5.9816 5.3792 37 1 5.2078 -5.0461 1.2500 38 1 3.6747 -5.3309 2.1206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028465184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:06 Heat of formation + Delta-G solvation = 16.215457 kcal Electronic energy + Delta-G solvation = -21758.956708 eV Core-core repulsion = 18411.189700 eV Total energy + Delta-G solvation = -3347.767009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.67536 -39.74428 -38.05760 -35.72360 -34.74371 -32.65195 -31.88185 -30.56233 -28.95434 -27.96860 -25.85865 -24.23188 -23.36671 -21.86990 -20.94392 -20.35192 -20.14409 -18.33695 -17.15708 -16.99308 -16.66370 -16.37955 -15.94753 -14.99726 -14.83639 -14.58142 -14.02109 -13.57481 -13.50236 -13.34715 -13.22069 -12.86247 -12.53481 -12.42049 -12.03887 -11.64044 -11.36995 -11.35044 -11.14609 -11.02079 -10.79943 -10.62600 -10.30220 -10.20543 -9.92335 -9.42400 -9.34574 -9.01706 -8.67083 -7.11260 -5.98945 -3.27389 0.59799 2.17615 2.24081 2.91418 3.06114 3.27801 3.40011 3.44732 3.78339 4.48231 4.49779 4.53361 4.75745 4.95244 4.99849 5.16040 5.21123 5.24623 5.39611 5.45712 5.55687 5.62562 5.69263 5.73137 5.78651 5.95077 6.01157 6.06563 6.20740 6.22503 6.38952 6.53962 6.67260 6.73989 7.14289 7.37929 7.66607 7.88767 8.27418 8.79359 9.65027 10.13590 11.17627 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.005005 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.920722 B = 5593.118952 C = 6580.246441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.078 3.922 3 N -0.495 5.495 4 C 0.203 3.797 5 O -0.190 6.190 6 C -0.114 4.114 7 C 0.608 3.392 8 O -0.516 6.516 9 N -0.713 5.713 10 C 0.131 3.869 11 C -0.117 4.117 12 H 0.081 0.919 13 C -0.120 4.120 14 C 0.132 3.868 15 N -0.610 5.610 16 C -0.244 4.244 17 H 0.094 0.906 18 C 0.021 3.979 19 N -0.906 5.906 20 Si 0.886 3.114 21 H -0.287 1.287 22 H -0.304 1.304 23 H -0.280 1.280 24 C 0.124 3.876 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.257 0.743 29 H 0.407 0.593 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.025 0.975 36 H 0.263 0.737 37 H 0.024 0.976 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 11.508 -13.290 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 N -0.225 5.225 4 C -0.022 4.022 5 O -0.076 6.076 6 C -0.169 4.169 7 C 0.393 3.607 8 O -0.394 6.394 9 N -0.363 5.363 10 C 0.008 3.992 11 C -0.137 4.137 12 H 0.099 0.901 13 C -0.159 4.159 14 C 0.007 3.993 15 N -0.337 5.337 16 C -0.370 4.370 17 H 0.111 0.889 18 C -0.177 4.177 19 N -0.549 5.549 20 Si 0.718 3.282 21 H -0.214 1.214 22 H -0.232 1.232 23 H -0.207 1.207 24 C -0.001 4.001 25 H 0.100 0.900 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.272 0.728 29 H 0.241 0.759 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.041 0.959 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.661 11.866 -13.042 19.645 hybrid contribution 1.525 0.659 -0.318 1.692 sum -7.136 12.526 -13.361 19.655 Atomic orbital electron populations 1.20400 0.85228 1.04487 1.03688 1.22077 0.98435 0.86291 0.97758 1.70353 1.01335 1.31432 1.19331 1.28357 0.97643 0.79425 0.96817 1.84521 1.29660 1.24495 1.68891 1.22983 0.81461 0.96413 1.16078 1.16281 0.85801 0.81326 0.77300 1.90851 1.15608 1.81915 1.51035 1.45988 1.10037 1.06718 1.73572 1.21548 0.96799 0.77939 1.02883 1.22475 0.96001 0.95860 0.99341 0.90051 1.22732 0.99639 0.93115 1.00449 1.21615 0.93432 0.94144 0.90125 1.44861 1.65795 1.02430 1.20617 1.18681 1.25646 0.95912 0.96807 0.88868 1.24953 0.99583 0.97650 0.95531 1.69857 1.44493 1.35542 1.05036 0.86911 0.77787 0.84775 0.78737 1.21422 1.23182 1.20721 1.21769 0.95813 0.89174 0.93354 0.90003 0.88524 0.90457 0.72752 0.75863 0.90377 0.90733 0.90775 0.91123 0.93065 0.95745 0.92700 0.95909 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.87 36.01 0.36 -0.52 16 2 C 0.08 1.01 7.16 -82.46 -0.59 0.42 16 3 N -0.50 -5.97 11.26 -10.88 -0.12 -6.09 16 4 C 0.20 1.92 13.21 52.24 0.69 2.61 16 5 O -0.19 -2.29 10.57 4.41 0.05 -2.24 16 6 C -0.11 -1.55 7.18 -36.84 -0.26 -1.81 16 7 C 0.61 8.90 7.79 -12.84 -0.10 8.80 16 8 O -0.52 -8.35 14.79 5.21 0.08 -8.27 16 9 N -0.71 -9.99 5.43 -61.61 -0.33 -10.32 16 10 C 0.13 1.82 5.00 -4.04 -0.02 1.80 16 11 C -0.12 -1.80 2.98 -88.78 -0.26 -2.07 16 12 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 13 C -0.12 -1.76 6.54 -24.58 -0.16 -1.92 16 14 C 0.13 2.48 7.23 -2.53 -0.02 2.47 16 15 N -0.61 -14.52 3.22 -169.84 -0.55 -15.07 16 16 C -0.24 -6.89 10.56 -15.06 -0.16 -7.05 16 17 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 18 C 0.02 0.63 5.43 -17.43 -0.09 0.53 16 19 N -0.91 -27.97 13.97 55.49 0.78 -27.19 16 20 Si 0.89 22.51 24.38 -169.99 -4.15 18.36 16 21 H -0.29 -7.00 6.84 56.52 0.39 -6.61 16 22 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 23 H -0.28 -6.96 6.87 56.52 0.39 -6.58 16 24 C 0.12 2.59 4.55 -2.90 -0.01 2.58 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.10 1.13 6.47 -51.93 -0.34 0.80 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.41 5.46 8.20 -40.82 -0.33 5.12 16 30 H 0.08 1.18 8.00 -51.93 -0.42 0.76 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.06 8.05 -51.93 -0.42 0.64 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.02 0.52 3.55 -51.93 -0.18 0.34 16 38 H 0.04 0.96 7.73 -51.93 -0.40 0.56 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -34.29 315.34 -5.20 -39.49 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.06 Total: 0.73 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -0.64 Total: 5.84 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.23 Total: -58.67 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.12 Total: -10.51 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.15 Total: 18.36 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.29 -5.20 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028465184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.705 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds