Wall clock time and date at job start Tue Mar 31 2020 02:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33691 * 126.27363 * 2 1 4 4 C 1.30612 * 108.99439 * 179.97438 * 3 2 1 5 5 O 1.33665 * 109.15445 * 0.24682 * 4 3 2 6 6 C 1.35346 * 107.68686 * 359.60483 * 5 4 3 7 7 C 1.46712 * 126.64721 * 180.14423 * 6 5 4 8 8 O 1.21681 * 120.00292 * 180.28749 * 7 6 5 9 9 N 1.34784 * 120.00026 * 0.28364 * 7 6 5 10 10 C 1.46499 * 120.00175 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46966 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.63786 * 305.70019 * 11 10 9 13 13 C 1.55158 * 110.71748 * 182.55898 * 11 10 9 14 14 C 1.54911 * 101.58045 * 206.13447 * 13 11 10 15 15 N 1.47422 * 104.83207 * 37.00949 * 14 13 11 16 16 C 1.36937 * 125.65009 * 155.90677 * 15 14 13 17 17 H 1.08001 * 119.99858 * 342.05150 * 16 15 14 18 18 C 1.38808 * 120.00344 * 162.05140 * 16 15 14 19 19 N 1.31615 * 120.00107 * 156.24680 * 18 16 15 20 20 Si 1.86799 * 119.99839 * 336.24410 * 18 16 15 21 21 H 1.48502 * 109.47354 * 84.66939 * 20 18 16 22 22 H 1.48502 * 109.47263 * 204.67263 * 20 18 16 23 23 H 1.48507 * 109.47423 * 324.66969 * 20 18 16 24 24 C 1.47322 * 108.73635 * 335.71551 * 15 14 13 25 25 H 1.09002 * 109.46971 * 90.02451 * 1 2 3 26 26 H 1.09003 * 109.47102 * 210.01976 * 1 2 3 27 27 H 1.08992 * 109.47101 * 330.02415 * 1 2 3 28 28 H 1.07999 * 125.42383 * 179.97438 * 4 3 2 29 29 H 0.96996 * 119.99780 * 0.02562 * 9 7 6 30 30 H 1.09002 * 109.47075 * 300.00246 * 10 9 7 31 31 H 1.08995 * 109.46974 * 59.99935 * 10 9 7 32 32 H 1.09007 * 111.00440 * 324.20513 * 13 11 10 33 33 H 1.08997 * 111.00445 * 88.02175 * 13 11 10 34 34 H 1.09000 * 110.36691 * 155.84740 * 14 13 11 35 35 H 1.08995 * 110.36496 * 278.06065 * 14 13 11 36 36 H 0.97005 * 119.99824 * 180.02562 * 19 18 16 37 37 H 1.09002 * 110.06282 * 241.87373 * 24 15 14 38 38 H 1.09004 * 109.84569 * 120.61114 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 0.0006 5 8 3.5890 -0.6461 -0.0045 6 6 2.3136 -1.0993 0.0005 7 6 1.8826 -2.5017 0.0007 8 8 0.6966 -2.7737 0.0003 9 7 2.8004 -3.4888 0.0012 10 6 2.3701 -4.8891 0.0008 11 6 3.5992 -5.8003 0.0021 12 1 4.2632 -5.5510 -0.8255 13 6 3.1767 -7.2919 -0.0631 14 6 4.3840 -7.9869 0.6146 15 7 4.7913 -7.0686 1.6934 16 6 5.4741 -7.4216 2.8267 17 1 5.5092 -8.4558 3.1359 18 6 6.1212 -6.4503 3.5782 19 7 6.3668 -6.6605 4.8540 20 14 6.6433 -4.8449 2.7787 21 1 5.5017 -3.8952 2.7833 22 1 7.7773 -4.2595 3.5381 23 1 7.0663 -5.1035 1.3788 24 6 4.3466 -5.7070 1.3490 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8901 0.5134 28 1 4.4044 1.3443 0.0003 29 1 3.7458 -3.2719 0.0018 30 1 1.7716 -5.0856 0.8903 31 1 1.7728 -5.0853 -0.8896 32 1 2.2600 -7.4633 0.5012 33 1 3.0647 -7.6214 -1.0960 34 1 4.0841 -8.9495 1.0288 35 1 5.1960 -8.1188 -0.1004 36 1 6.8186 -5.9816 5.3792 37 1 5.2078 -5.0461 1.2500 38 1 3.6747 -5.3309 2.1206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028465184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:05 Heat of formation + Delta-G solvation = -12.025607 kcal Electronic energy + Delta-G solvation = -21760.181333 eV Core-core repulsion = 18411.189700 eV Total energy + Delta-G solvation = -3348.991633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.53248 -40.86879 -39.50291 -36.68537 -35.96275 -34.52215 -32.86154 -32.16502 -30.35889 -29.01134 -27.35903 -25.65303 -24.49383 -22.86363 -22.15857 -21.83814 -21.35090 -19.37692 -18.97181 -18.05867 -17.81537 -17.50541 -17.23639 -16.41325 -15.97920 -15.65933 -15.45085 -15.15335 -15.02726 -14.37980 -14.26613 -14.22836 -14.09052 -13.50372 -13.28810 -13.24214 -13.03758 -12.67691 -12.43313 -12.21250 -12.15691 -12.03491 -11.86674 -11.61262 -11.32521 -11.22728 -10.79031 -10.43083 -9.97225 -9.09894 -8.21911 -5.46159 -0.30938 1.23904 1.32819 1.33115 1.37503 1.43696 1.88393 2.07307 2.37697 2.98412 3.08937 3.28034 3.57925 3.61250 3.70547 3.79454 3.85123 4.32654 4.36381 4.38617 4.45136 4.53154 4.62165 4.65995 4.74157 4.78337 4.83992 4.95306 5.01938 5.09027 5.12517 5.21484 5.28375 5.43260 5.66412 6.06989 6.14318 6.47380 6.73855 6.83015 7.51609 8.08097 8.98466 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.005005 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.920722 B = 5593.118952 C = 6580.246441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.076 3.924 3 N -0.523 5.523 4 C 0.227 3.773 5 O -0.198 6.198 6 C -0.144 4.144 7 C 0.607 3.393 8 O -0.539 6.539 9 N -0.713 5.713 10 C 0.138 3.862 11 C -0.101 4.101 12 H 0.105 0.895 13 C -0.105 4.105 14 C 0.121 3.879 15 N -0.631 5.631 16 C -0.238 4.238 17 H 0.060 0.940 18 C -0.041 4.041 19 N -0.956 5.956 20 Si 0.953 3.047 21 H -0.274 1.274 22 H -0.310 1.310 23 H -0.267 1.267 24 C 0.118 3.882 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.308 0.692 29 H 0.410 0.590 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.046 0.954 35 H 0.036 0.964 36 H 0.262 0.738 37 H 0.015 0.985 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.048 13.218 -16.073 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 N -0.252 5.252 4 C 0.003 3.997 5 O -0.084 6.084 6 C -0.199 4.199 7 C 0.394 3.606 8 O -0.419 6.419 9 N -0.363 5.363 10 C 0.015 3.985 11 C -0.120 4.120 12 H 0.123 0.877 13 C -0.144 4.144 14 C -0.003 4.003 15 N -0.358 5.358 16 C -0.367 4.367 17 H 0.078 0.922 18 C -0.235 4.235 19 N -0.602 5.602 20 Si 0.783 3.217 21 H -0.201 1.201 22 H -0.239 1.239 23 H -0.193 1.193 24 C -0.007 4.007 25 H 0.111 0.889 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.322 0.678 29 H 0.245 0.755 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.133 0.867 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -8.923 13.570 -15.879 22.714 hybrid contribution 1.598 0.095 0.565 1.698 sum -7.324 13.665 -15.314 21.792 Atomic orbital electron populations 1.20427 0.84438 1.04418 1.04388 1.22415 0.99281 0.86492 0.96553 1.70399 1.02393 1.31322 1.21084 1.29606 0.98370 0.78893 0.92816 1.84519 1.28942 1.25641 1.69333 1.22764 0.82281 0.96052 1.18773 1.16401 0.85552 0.81904 0.76783 1.90829 1.16413 1.82475 1.52200 1.45977 1.10165 1.06684 1.73452 1.21477 0.96027 0.77683 1.03336 1.22401 0.96251 0.96815 0.96510 0.87658 1.22709 0.97462 0.91691 1.02510 1.21896 0.95546 0.93636 0.89195 1.45021 1.65242 1.04824 1.20735 1.18662 1.25159 0.94588 0.98258 0.92184 1.25637 1.00433 1.01636 0.95832 1.69994 1.46505 1.37175 1.06575 0.85830 0.77233 0.80678 0.77944 1.20069 1.23895 1.19325 1.21865 0.95518 0.87321 0.95970 0.88852 0.89775 0.89234 0.67755 0.75495 0.91964 0.88248 0.90552 0.86701 0.93570 0.94579 0.92933 0.96797 0.96199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 9.87 71.24 0.70 -0.93 16 2 C 0.08 1.85 7.16 41.84 0.30 2.15 16 3 N -0.52 -11.41 11.26 -303.12 -3.41 -14.82 16 4 C 0.23 3.57 13.21 130.42 1.72 5.30 16 5 O -0.20 -4.28 10.57 -7.13 -0.08 -4.36 16 6 C -0.14 -3.70 7.18 24.04 0.17 -3.52 16 7 C 0.61 17.04 7.79 86.46 0.67 17.71 16 8 O -0.54 -17.01 14.79 -4.29 -0.06 -17.07 16 9 N -0.71 -18.51 5.43 -467.05 -2.53 -21.04 16 10 C 0.14 3.45 5.00 86.38 0.43 3.88 16 11 C -0.10 -2.75 2.98 -9.60 -0.03 -2.78 16 12 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 13 C -0.11 -2.68 6.54 31.99 0.21 -2.47 16 14 C 0.12 4.33 7.23 86.86 0.63 4.96 16 15 N -0.63 -29.75 3.22 -691.24 -2.22 -31.97 16 16 C -0.24 -13.80 10.56 84.03 0.89 -12.92 16 17 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 18 C -0.04 -2.44 5.43 84.86 0.46 -1.98 16 19 N -0.96 -61.10 13.97 21.65 0.30 -60.80 16 20 Si 0.95 47.06 24.38 68.60 1.67 48.73 16 21 H -0.27 -12.79 6.84 99.48 0.68 -12.11 16 22 H -0.31 -15.48 7.11 99.48 0.71 -14.78 16 23 H -0.27 -12.47 6.87 99.48 0.68 -11.79 16 24 C 0.12 4.76 4.55 86.67 0.39 5.15 16 25 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 1.95 6.47 -2.39 -0.02 1.93 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.31 0.88 8.06 -2.91 -0.02 0.86 16 29 H 0.41 10.04 8.20 -92.71 -0.76 9.28 16 30 H 0.06 1.78 8.00 -2.39 -0.02 1.76 16 31 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.08 1.94 8.05 -2.38 -0.02 1.92 16 33 H 0.11 2.01 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 37 H 0.01 0.62 3.55 -2.39 -0.01 0.61 16 38 H 0.02 0.89 7.73 -2.39 -0.02 0.87 16 Total: -1.00 -77.35 315.34 0.50 -76.85 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.28 Total: 9.94 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 6.56 Total: 14.55 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -7.87 Total: -128.64 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.14 Total: -21.43 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.67 Total: 48.73 kcal Total: -77.35 0.50 -76.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028465184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.824 kcal (2) G-P(sol) polarization free energy of solvation -77.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds