Wall clock time and date at job start Tue Mar 31 2020 02:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33691 * 126.27606 * 2 1 4 4 C 1.30614 * 108.99612 * 179.97438 * 3 2 1 5 5 O 1.33671 * 109.15377 * 359.73124 * 4 3 2 6 6 C 1.35341 * 107.68177 * 0.43073 * 5 4 3 7 7 C 1.46728 * 126.64233 * 179.83889 * 6 5 4 8 8 O 1.21678 * 119.99758 * 179.68931 * 7 6 5 9 9 N 1.34775 * 119.99911 * 359.69028 * 7 6 5 10 10 C 1.46497 * 119.99944 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47114 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.92180 * 57.44684 * 11 10 9 13 13 C 1.55155 * 111.00532 * 181.35298 * 11 10 9 14 14 C 1.54327 * 102.94571 * 153.57522 * 13 11 10 15 15 N 1.47024 * 107.26774 * 337.80617 * 14 13 11 16 16 C 1.36941 * 125.64618 * 179.20447 * 15 14 13 17 17 H 1.08005 * 119.99780 * 179.68989 * 16 15 14 18 18 C 1.38813 * 119.99913 * 359.69358 * 16 15 14 19 19 N 1.31616 * 119.99926 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99719 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47341 * 89.99896 * 20 18 16 22 22 H 1.48503 * 109.46756 * 209.99724 * 20 18 16 23 23 H 1.48496 * 109.46957 * 329.99498 * 20 18 16 24 24 C 1.47426 * 108.70449 * 358.94057 * 15 14 13 25 25 H 1.08998 * 109.47434 * 270.04745 * 1 2 3 26 26 H 1.09007 * 109.46726 * 30.04055 * 1 2 3 27 27 H 1.08994 * 109.47416 * 150.04210 * 1 2 3 28 28 H 1.08000 * 125.42528 * 180.02562 * 4 3 2 29 29 H 0.97000 * 120.00160 * 0.02562 * 9 7 6 30 30 H 1.09002 * 109.46937 * 60.00106 * 10 9 7 31 31 H 1.09002 * 109.47231 * 300.00009 * 10 9 7 32 32 H 1.08999 * 110.71965 * 271.93488 * 13 11 10 33 33 H 1.09000 * 110.72417 * 35.03508 * 13 11 10 34 34 H 1.08995 * 109.88184 * 218.39040 * 14 13 11 35 35 H 1.09002 * 109.88385 * 97.22047 * 14 13 11 36 36 H 0.97001 * 119.99407 * 180.02562 * 19 18 16 37 37 H 1.09002 * 110.36518 * 142.96440 * 24 15 14 38 38 H 1.08995 * 110.36673 * 265.17549 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2981 1.0778 0.0000 4 6 3.5453 0.6898 0.0006 5 8 3.5890 -0.6462 0.0068 6 6 2.3137 -1.0992 0.0006 7 6 1.8826 -2.5017 0.0008 8 8 0.6966 -2.7736 0.0005 9 7 2.8003 -3.4888 0.0014 10 6 2.3699 -4.8891 0.0022 11 6 3.5989 -5.8004 0.0034 12 1 4.2374 -5.5915 0.8617 13 6 3.1831 -7.2948 -0.0300 14 6 4.3978 -7.9768 -0.6943 15 7 5.1133 -6.9450 -1.4590 16 6 6.2591 -7.1393 -2.1834 17 1 6.7071 -6.3141 -2.7170 18 6 6.8446 -8.3970 -2.2319 19 7 6.2989 -9.4025 -1.5812 20 14 8.4080 -8.6619 -3.2195 21 1 9.5885 -8.4188 -2.3522 22 1 8.4438 -10.0579 -3.7245 23 1 8.4342 -7.7196 -4.3669 24 6 4.3896 -5.6679 -1.3221 25 1 -0.3634 0.0009 1.0276 26 1 -0.3633 0.8897 -0.5145 27 1 -0.3634 -0.8903 -0.5131 28 1 4.4044 1.3442 0.0011 29 1 3.7457 -3.2720 0.0021 30 1 1.7720 -5.0859 -0.8877 31 1 1.7719 -5.0850 0.8923 32 1 3.0319 -7.6756 0.9801 33 1 2.2842 -7.4318 -0.6309 34 1 4.0587 -8.7666 -1.3645 35 1 5.0535 -8.3929 0.0706 36 1 6.7083 -10.2812 -1.6149 37 1 5.0933 -4.8376 -1.2626 38 1 3.7074 -5.5267 -2.1603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028465185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:10 Heat of formation + Delta-G solvation = 8.205966 kcal Electronic energy + Delta-G solvation = -21327.599067 eV Core-core repulsion = 17979.484741 eV Total energy + Delta-G solvation = -3348.114326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.68553 -39.68547 -37.71264 -35.71449 -34.68322 -32.59389 -31.85225 -29.96701 -28.69342 -27.72693 -25.64893 -24.26403 -23.27660 -21.84201 -20.87802 -20.00455 -19.89165 -18.31493 -17.14856 -16.90869 -16.61990 -16.17801 -15.40023 -14.85564 -14.71696 -14.54356 -14.06326 -13.59396 -13.50466 -13.23056 -13.12047 -12.44541 -12.37824 -12.05729 -11.78842 -11.46021 -11.36697 -11.15146 -10.93503 -10.82215 -10.57242 -10.26014 -10.11097 -9.95954 -9.88753 -9.68996 -9.36245 -8.99507 -8.62917 -6.86549 -5.74127 -3.07876 0.59247 2.16652 2.23150 2.92650 3.09281 3.37893 3.42953 3.45023 3.77312 4.46328 4.47326 4.56711 5.00403 5.16679 5.19791 5.23546 5.36116 5.44772 5.49935 5.61307 5.62570 5.69434 5.82817 5.94940 5.99039 6.05685 6.26672 6.29238 6.45189 6.48548 6.62037 6.85627 7.16250 7.40064 7.52928 7.59926 7.79733 7.91998 8.23113 9.19242 9.79520 10.45276 11.37619 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027364 B = 0.003484 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.987558 B = 8034.301293 C = 8856.284391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.076 3.924 3 N -0.495 5.495 4 C 0.202 3.798 5 O -0.189 6.189 6 C -0.112 4.112 7 C 0.606 3.394 8 O -0.518 6.518 9 N -0.710 5.710 10 C 0.132 3.868 11 C -0.119 4.119 12 H 0.081 0.919 13 C -0.134 4.134 14 C 0.177 3.823 15 N -0.606 5.606 16 C -0.230 4.230 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.142 3.858 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.257 0.743 29 H 0.407 0.593 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.047 0.953 36 H 0.252 0.748 37 H 0.035 0.965 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 16.724 5.354 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.048 4.048 3 N -0.225 5.225 4 C -0.023 4.023 5 O -0.075 6.075 6 C -0.168 4.168 7 C 0.391 3.609 8 O -0.396 6.396 9 N -0.360 5.360 10 C 0.009 3.991 11 C -0.139 4.139 12 H 0.099 0.901 13 C -0.173 4.173 14 C 0.052 3.948 15 N -0.333 5.333 16 C -0.359 4.359 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.015 3.985 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.272 0.728 29 H 0.242 0.758 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -8.633 16.877 5.293 19.682 hybrid contribution 1.838 -0.596 -0.506 1.998 sum -6.795 16.281 4.787 18.280 Atomic orbital electron populations 1.20396 0.85295 1.04420 1.03706 1.22074 0.98425 0.86344 0.97922 1.70351 1.01369 1.31473 1.19296 1.28348 0.97612 0.79459 0.96929 1.84518 1.29623 1.24436 1.68907 1.23016 0.81425 0.96442 1.15879 1.16309 0.85859 0.81323 0.77452 1.90853 1.15720 1.81903 1.51147 1.46002 1.09997 1.06703 1.73266 1.21526 0.97230 0.77891 1.02488 1.22629 0.95419 0.95577 1.00249 0.90085 1.22863 1.00323 0.93464 1.00647 1.21155 0.88969 0.90338 0.94300 1.44481 1.27055 1.03824 1.57904 1.19056 0.99116 0.94918 1.22765 0.90487 1.24809 0.99341 0.95791 1.00496 1.69963 1.40449 1.00575 1.45909 0.86113 0.82937 0.77165 0.79512 1.21591 1.21641 1.20700 1.21568 0.93617 0.90306 0.92999 0.90023 0.90517 0.88545 0.72778 0.75761 0.90799 0.91108 0.91889 0.92107 0.93852 0.93485 0.93728 0.94683 0.96286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 9.87 36.01 0.36 -0.47 16 2 C 0.08 0.91 7.16 -82.46 -0.59 0.32 16 3 N -0.50 -5.52 11.26 -10.88 -0.12 -5.64 16 4 C 0.20 1.68 13.21 52.24 0.69 2.37 16 5 O -0.19 -2.01 10.57 4.42 0.05 -1.96 16 6 C -0.11 -1.40 7.18 -36.84 -0.26 -1.66 16 7 C 0.61 8.29 7.79 -12.83 -0.10 8.19 16 8 O -0.52 -8.09 14.79 5.21 0.08 -8.02 16 9 N -0.71 -9.13 5.40 -61.61 -0.33 -9.47 16 10 C 0.13 1.81 5.12 -4.05 -0.02 1.79 16 11 C -0.12 -1.91 3.10 -88.47 -0.27 -2.18 16 12 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 13 C -0.13 -2.37 6.42 -24.90 -0.16 -2.52 16 14 C 0.18 4.21 5.37 -3.06 -0.02 4.19 16 15 N -0.61 -15.23 3.39 -170.07 -0.58 -15.81 16 16 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 17 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 18 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 19 N -0.92 -26.88 10.31 55.49 0.57 -26.31 16 20 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.14 2.79 6.41 -2.53 -0.02 2.77 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.10 1.06 6.47 -51.93 -0.34 0.73 16 28 H 0.26 0.70 8.06 -52.49 -0.42 0.28 16 29 H 0.41 4.81 8.13 -40.82 -0.33 4.47 16 30 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 34 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 35 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 36 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.02 0.39 8.01 -51.93 -0.42 -0.03 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -32.98 320.69 -6.38 -39.35 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.20 Total: 0.17 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.65 Total: 5.95 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.46 Total: -57.23 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.12 Total: -9.98 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.98 -6.38 -39.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028465185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.560 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds