Wall clock time and date at job start Tue Mar 31 2020 02:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41270 * 128.07857 * 2 1 4 4 N 1.30120 * 106.59200 * 180.23139 * 3 2 1 5 5 O 1.20892 * 111.98227 * 359.78167 * 4 3 2 6 6 C 1.34639 * 111.46851 * 0.02562 * 5 4 3 7 7 C 1.47507 * 126.94429 * 179.97438 * 6 5 4 8 8 O 1.21592 * 119.99893 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00005 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99832 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47114 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.64142 * 305.70316 * 11 10 9 13 13 C 1.55150 * 110.72108 * 182.55796 * 11 10 9 14 14 C 1.54913 * 101.58162 * 206.13560 * 13 11 10 15 15 N 1.47423 * 104.83095 * 37.01013 * 14 13 11 16 16 C 1.36937 * 125.64707 * 155.91227 * 15 14 13 17 17 H 1.08005 * 119.99757 * 342.04054 * 16 15 14 18 18 C 1.38809 * 120.00337 * 162.05170 * 16 15 14 19 19 N 1.31618 * 120.00566 * 156.23433 * 18 16 15 20 20 Si 1.86803 * 119.99486 * 336.24028 * 18 16 15 21 21 H 1.48490 * 109.47497 * 84.67106 * 20 18 16 22 22 H 1.48508 * 109.46950 * 204.66763 * 20 18 16 23 23 H 1.48497 * 109.47085 * 324.66439 * 20 18 16 24 24 C 1.47320 * 108.73599 * 335.71687 * 15 14 13 25 25 H 1.08997 * 109.46967 * 270.12923 * 1 2 3 26 26 H 1.09005 * 109.47350 * 30.12669 * 1 2 3 27 27 H 1.09000 * 109.47131 * 150.12284 * 1 2 3 28 28 H 1.08004 * 126.70285 * 359.97438 * 3 2 1 29 29 H 0.96997 * 119.99866 * 359.97438 * 9 7 6 30 30 H 1.08999 * 109.47463 * 299.99805 * 10 9 7 31 31 H 1.09002 * 109.47502 * 60.00171 * 10 9 7 32 32 H 1.09007 * 111.00630 * 324.20643 * 13 11 10 33 33 H 1.08998 * 111.00773 * 88.02527 * 13 11 10 34 34 H 1.09006 * 110.36816 * 155.84743 * 14 13 11 35 35 H 1.09004 * 110.36215 * 278.06136 * 14 13 11 36 36 H 0.96998 * 120.00410 * 179.97438 * 19 18 16 37 37 H 1.09003 * 110.05796 * 241.87603 * 24 15 14 38 38 H 1.08992 * 109.85181 * 120.61349 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6354 -0.0050 5 8 3.5995 -0.5734 -0.0038 6 6 2.3508 -1.0770 0.0019 7 6 1.9696 -2.5020 0.0044 8 8 0.7952 -2.8171 0.0092 9 7 2.9229 -3.4546 0.0015 10 6 2.5442 -4.8698 0.0034 11 6 3.8059 -5.7354 -0.0013 12 1 4.4562 -5.4622 -0.8324 13 6 3.4381 -7.2414 -0.0641 14 6 4.6735 -7.8915 0.6075 15 7 5.0523 -6.9584 1.6842 16 6 5.7534 -7.2858 2.8140 17 1 5.8278 -8.3180 3.1231 18 6 6.3681 -6.2912 3.5621 19 7 6.6276 -6.4917 4.8368 20 14 6.8269 -4.6679 2.7596 21 1 5.6513 -3.7609 2.7699 22 1 7.9424 -4.0410 3.5134 23 1 7.2520 -4.9115 1.3578 24 6 4.5561 -5.6142 1.3418 25 1 -0.3633 0.0023 1.0276 26 1 -0.3634 0.8889 -0.5158 27 1 -0.3633 -0.8911 -0.5119 28 1 2.0947 2.1542 -0.0004 29 1 3.8597 -3.2032 -0.0027 30 1 1.9571 -5.0877 0.8956 31 1 1.9508 -5.0885 -0.8844 32 1 2.5311 -7.4463 0.5048 33 1 3.3331 -7.5753 -1.0964 34 1 4.4112 -8.8643 1.0234 35 1 5.4863 -7.9938 -0.1116 36 1 7.0575 -5.7968 5.3594 37 1 5.3920 -4.9223 1.2383 38 1 3.8749 -5.2627 2.1165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028903418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:57 Heat of formation + Delta-G solvation = 30.499963 kcal Electronic energy + Delta-G solvation = -21768.201673 eV Core-core repulsion = 18421.054087 eV Total energy + Delta-G solvation = -3347.147586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.10178 -40.95610 -39.50711 -36.42113 -35.64152 -34.54288 -33.49938 -32.17462 -30.32934 -29.31586 -27.48727 -25.77823 -24.60010 -23.26929 -22.14977 -21.81540 -21.36838 -19.65406 -18.98373 -18.88105 -17.83093 -17.28059 -16.91584 -16.45406 -16.04608 -15.63768 -15.34347 -15.03553 -14.74802 -14.38206 -14.25072 -14.20438 -14.12474 -13.63346 -13.48174 -13.24661 -13.02690 -12.66336 -12.41741 -12.32851 -12.12849 -11.85001 -11.58932 -11.49937 -11.42130 -11.22554 -10.77580 -10.64994 -10.21150 -9.08100 -8.21061 -5.44799 -0.35729 1.02245 1.25848 1.34560 1.44541 1.47711 1.81034 2.11264 2.38427 3.00071 3.14676 3.29948 3.49756 3.63308 3.72156 3.81525 3.87438 3.93493 4.27666 4.36900 4.47909 4.55604 4.64890 4.73700 4.76644 4.77904 4.86032 4.91565 5.02278 5.10790 5.13345 5.22685 5.29454 5.45776 5.67998 6.08009 6.14504 6.75348 6.77057 6.95904 7.53234 8.09642 8.99276 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.005015 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.069221 B = 5582.327408 C = 6571.138158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.116 4.116 3 C 0.000 4.000 4 N -0.367 5.367 5 O 0.096 5.904 6 C -0.113 4.113 7 C 0.607 3.393 8 O -0.534 6.534 9 N -0.711 5.711 10 C 0.138 3.862 11 C -0.102 4.102 12 H 0.106 0.894 13 C -0.105 4.105 14 C 0.121 3.879 15 N -0.631 5.631 16 C -0.236 4.236 17 H 0.061 0.939 18 C -0.039 4.039 19 N -0.956 5.956 20 Si 0.948 3.052 21 H -0.273 1.273 22 H -0.313 1.313 23 H -0.267 1.267 24 C 0.116 3.884 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.238 0.762 29 H 0.411 0.589 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.046 0.954 35 H 0.035 0.965 36 H 0.261 0.739 37 H 0.014 0.986 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.059 12.993 -16.040 24.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C -0.178 4.178 4 N -0.070 5.070 5 O 0.027 5.973 6 C -0.179 4.179 7 C 0.391 3.609 8 O -0.412 6.412 9 N -0.361 5.361 10 C 0.015 3.985 11 C -0.121 4.121 12 H 0.124 0.876 13 C -0.143 4.143 14 C -0.003 4.003 15 N -0.358 5.358 16 C -0.365 4.365 17 H 0.079 0.921 18 C -0.233 4.233 19 N -0.603 5.603 20 Si 0.779 3.221 21 H -0.199 1.199 22 H -0.242 1.242 23 H -0.193 1.193 24 C -0.008 4.008 25 H 0.105 0.895 26 H 0.124 0.876 27 H 0.095 0.905 28 H 0.254 0.746 29 H 0.247 0.753 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -12.579 13.282 -15.851 24.205 hybrid contribution 0.693 0.607 0.582 1.089 sum -11.886 13.888 -15.269 23.818 Atomic orbital electron populations 1.20418 0.84621 1.04935 1.04091 1.22082 1.00149 0.89860 1.00000 1.25656 0.86510 1.03602 1.01996 1.73774 1.24698 0.91189 1.17320 1.84964 1.28439 1.15860 1.68064 1.24089 0.85257 0.96377 1.12157 1.16543 0.85448 0.81909 0.76997 1.90822 1.17720 1.81075 1.51555 1.46011 1.10107 1.07003 1.72962 1.21506 0.96199 0.77247 1.03563 1.22414 0.96066 0.97054 0.96533 0.87615 1.22703 0.97354 0.91710 1.02532 1.21903 0.95693 0.93491 0.89232 1.45027 1.63769 1.05967 1.21071 1.18662 1.25182 0.94139 0.98483 0.92106 1.25596 1.00489 1.01413 0.95845 1.69985 1.47322 1.36237 1.06712 0.85907 0.77257 0.80918 0.78034 1.19909 1.24187 1.19314 1.21886 0.95284 0.87565 0.96105 0.89535 0.87639 0.90548 0.74600 0.75298 0.91693 0.87986 0.90451 0.86700 0.93573 0.94679 0.92977 0.96884 0.95990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.95 71.23 0.71 -0.51 16 2 C -0.12 -2.27 6.37 -19.45 -0.12 -2.40 16 3 C 0.00 0.00 12.14 85.69 1.04 1.04 16 4 N -0.37 -8.92 12.04 -58.55 -0.71 -9.63 16 5 O 0.10 2.49 11.04 65.85 0.73 3.21 16 6 C -0.11 -2.77 7.29 24.38 0.18 -2.59 16 7 C 0.61 15.99 7.82 86.69 0.68 16.67 16 8 O -0.53 -15.77 15.12 -4.00 -0.06 -15.83 16 9 N -0.71 -17.72 5.43 -466.29 -2.53 -20.25 16 10 C 0.14 3.30 5.00 86.38 0.43 3.73 16 11 C -0.10 -2.73 2.98 -9.61 -0.03 -2.76 16 12 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 13 C -0.10 -2.61 6.54 31.99 0.21 -2.40 16 14 C 0.12 4.30 7.23 86.86 0.63 4.93 16 15 N -0.63 -29.76 3.22 -691.22 -2.22 -31.98 16 16 C -0.24 -13.72 10.56 84.03 0.89 -12.83 16 17 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 18 C -0.04 -2.34 5.43 84.86 0.46 -1.87 16 19 N -0.96 -61.49 13.97 21.65 0.30 -61.19 16 20 Si 0.95 47.84 24.38 68.60 1.67 49.52 16 21 H -0.27 -12.98 6.83 99.48 0.68 -12.30 16 22 H -0.31 -16.10 7.11 99.48 0.71 -15.39 16 23 H -0.27 -12.77 6.87 99.48 0.68 -12.08 16 24 C 0.12 4.68 4.55 86.67 0.39 5.07 16 25 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.08 1.37 6.73 -2.39 -0.02 1.36 16 28 H 0.24 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.41 9.83 8.23 -92.71 -0.76 9.07 16 30 H 0.06 1.77 8.01 -2.39 -0.02 1.75 16 31 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.08 1.91 8.05 -2.38 -0.02 1.89 16 33 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 37 H 0.01 0.58 3.55 -2.39 -0.01 0.58 16 38 H 0.02 0.97 7.73 -2.39 -0.02 0.96 16 Total: -1.00 -75.05 315.59 2.92 -72.13 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.27 Total: 7.94 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 5.47 Total: 6.08 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -5.16 Total: -123.05 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.67 Total: -12.62 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 1.67 Total: 49.52 kcal Total: -75.05 2.92 -72.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028903418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.634 kcal (2) G-P(sol) polarization free energy of solvation -75.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds