Wall clock time and date at job start Tue Mar 31 2020 02:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35313 * 128.03867 * 2 1 4 4 O 1.34012 * 106.66977 * 180.02562 * 3 2 1 5 5 N 1.20903 * 111.84649 * 359.70328 * 4 3 2 6 6 C 1.30991 * 111.43876 * 0.49048 * 5 4 3 7 7 C 1.48327 * 126.93622 * 179.79712 * 6 5 4 8 8 O 1.21503 * 119.99697 * 179.68520 * 7 6 5 9 9 N 1.34773 * 120.00389 * 359.68097 * 7 6 5 10 10 C 1.46504 * 120.00257 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47171 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.91254 * 57.45208 * 11 10 9 13 13 C 1.55164 * 111.00283 * 181.35255 * 11 10 9 14 14 C 1.54322 * 102.93965 * 153.57810 * 13 11 10 15 15 N 1.47020 * 107.27467 * 337.80777 * 14 13 11 16 16 C 1.36939 * 125.65087 * 179.20508 * 15 14 13 17 17 H 1.07997 * 119.99591 * 174.35340 * 16 15 14 18 18 C 1.38813 * 119.99732 * 354.35924 * 16 15 14 19 19 N 1.31615 * 120.00275 * 7.02877 * 18 16 15 20 20 Si 1.86799 * 119.99623 * 187.02776 * 18 16 15 21 21 H 1.48500 * 109.47076 * 94.98809 * 20 18 16 22 22 H 1.48498 * 109.46809 * 214.98525 * 20 18 16 23 23 H 1.48499 * 109.47087 * 334.98434 * 20 18 16 24 24 C 1.47429 * 108.70230 * 358.93934 * 15 14 13 25 25 H 1.08997 * 109.47211 * 269.99625 * 1 2 3 26 26 H 1.09001 * 109.47305 * 30.00118 * 1 2 3 27 27 H 1.09000 * 109.47066 * 150.00163 * 1 2 3 28 28 H 1.08005 * 126.66320 * 359.97438 * 3 2 1 29 29 H 0.96996 * 120.00262 * 0.02562 * 9 7 6 30 30 H 1.09005 * 109.46528 * 60.00507 * 10 9 7 31 31 H 1.08999 * 109.47234 * 300.00544 * 10 9 7 32 32 H 1.08996 * 110.71724 * 271.94416 * 13 11 10 33 33 H 1.08993 * 110.71742 * 35.04068 * 13 11 10 34 34 H 1.09000 * 109.88266 * 218.38951 * 14 13 11 35 35 H 1.09003 * 109.88108 * 97.22299 * 14 13 11 36 36 H 0.96992 * 120.00186 * 180.02562 * 19 18 16 37 37 H 1.09002 * 110.36346 * 142.96798 * 24 15 14 38 38 H 1.08999 * 110.37028 * 265.18056 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5774 -0.0006 5 7 3.5988 -0.6316 0.0049 6 6 2.3836 -1.1205 -0.0006 7 6 1.9993 -2.5531 -0.0008 8 8 0.8255 -2.8672 -0.0005 9 7 2.9519 -3.5065 -0.0014 10 6 2.5722 -4.9215 -0.0011 11 6 3.8333 -5.7879 -0.0012 12 1 4.4644 -5.5565 0.8569 13 6 3.4716 -7.2964 -0.0351 14 6 4.7095 -7.9337 -0.7006 15 7 5.3870 -6.8765 -1.4652 16 6 6.5385 -7.0290 -2.1905 17 1 6.9092 -6.2130 -2.7929 18 6 7.2290 -8.2326 -2.1513 19 7 6.7084 -9.2701 -1.5311 20 14 8.8971 -8.3795 -2.9791 21 1 9.9686 -8.1392 -1.9794 22 1 9.0485 -9.7424 -3.5490 23 1 9.0003 -7.3738 -4.0668 24 6 4.6178 -5.6263 -1.3272 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 2.0558 2.1075 -0.0004 29 1 3.8889 -3.2558 -0.0013 30 1 1.9812 -5.1392 -0.8907 31 1 1.9823 -5.1392 0.8893 32 1 3.3347 -7.6828 0.9749 33 1 2.5777 -7.4652 -0.6355 34 1 4.3986 -8.7350 -1.3710 35 1 5.3803 -8.3263 0.0637 36 1 7.1911 -10.1110 -1.5034 37 1 5.2912 -4.7713 -1.2678 38 1 3.9302 -5.5094 -2.1649 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028914102.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:31 Heat of formation + Delta-G solvation = 22.933415 kcal Electronic energy + Delta-G solvation = -21288.853648 eV Core-core repulsion = 17941.377952 eV Total energy + Delta-G solvation = -3347.475696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.14196 -40.88986 -39.31067 -36.25411 -35.66558 -34.46699 -33.34208 -31.65937 -30.03389 -29.08204 -27.53551 -26.15722 -24.52224 -22.66929 -22.19703 -21.56863 -21.24338 -19.42506 -18.84596 -18.78092 -17.57263 -17.37108 -16.73598 -16.59629 -16.03628 -15.71751 -15.28120 -14.72992 -14.64862 -14.21215 -14.11354 -13.99744 -13.89299 -13.47370 -13.31079 -13.08094 -12.79998 -12.68370 -12.36978 -12.04151 -12.00609 -11.90956 -11.60563 -11.51561 -11.38391 -11.31751 -10.71057 -10.38904 -10.25863 -8.92754 -7.89034 -5.23793 0.06631 0.72984 1.44095 1.46090 1.55049 1.80698 2.00265 2.30058 2.47244 2.87657 3.28592 3.52538 3.57238 3.77254 3.91361 3.95773 3.98382 4.10181 4.37390 4.45049 4.57761 4.64164 4.71900 4.80286 4.83680 4.85000 4.96331 4.99112 5.04239 5.17616 5.35095 5.37737 5.43217 5.64754 5.74979 6.17397 6.22420 6.85190 7.06961 7.07671 7.74646 8.39434 9.21936 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027034 B = 0.003478 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.471192 B = 8049.022212 C = 8899.434187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.173 4.173 3 C -0.036 4.036 4 O 0.131 5.869 5 N -0.352 5.352 6 C -0.059 4.059 7 C 0.594 3.406 8 O -0.550 6.550 9 N -0.706 5.706 10 C 0.144 3.856 11 C -0.097 4.097 12 H 0.087 0.913 13 C -0.120 4.120 14 C 0.181 3.819 15 N -0.629 5.629 16 C -0.248 4.248 17 H 0.080 0.920 18 C -0.064 4.064 19 N -0.949 5.949 20 Si 0.978 3.022 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.268 1.268 24 C 0.138 3.862 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.278 0.722 29 H 0.411 0.589 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.004 0.996 35 H 0.016 0.984 36 H 0.248 0.752 37 H 0.041 0.959 38 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.940 21.935 5.660 25.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.179 4.179 3 C -0.116 4.116 4 O 0.053 5.947 5 N -0.051 5.051 6 C -0.216 4.216 7 C 0.379 3.621 8 O -0.427 6.427 9 N -0.357 5.357 10 C 0.021 3.979 11 C -0.117 4.117 12 H 0.105 0.895 13 C -0.158 4.158 14 C 0.056 3.944 15 N -0.356 5.356 16 C -0.377 4.377 17 H 0.098 0.902 18 C -0.257 4.257 19 N -0.597 5.597 20 Si 0.806 3.194 21 H -0.212 1.212 22 H -0.220 1.220 23 H -0.193 1.193 24 C 0.013 3.987 25 H 0.099 0.901 26 H 0.122 0.878 27 H 0.079 0.921 28 H 0.293 0.707 29 H 0.247 0.753 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.022 0.978 35 H 0.034 0.966 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -11.430 20.871 5.612 24.448 hybrid contribution 0.769 -0.548 -0.571 1.104 sum -10.660 20.323 5.041 23.496 Atomic orbital electron populations 1.20225 0.85556 1.04120 1.03570 1.21714 1.00073 0.89872 1.06192 1.26719 0.80384 1.02773 1.01738 1.84750 1.30956 1.14297 1.64701 1.74219 1.21757 0.92786 1.16379 1.23512 0.90730 0.96924 1.10446 1.17124 0.85278 0.83221 0.76483 1.90749 1.18251 1.82325 1.51373 1.45937 1.10142 1.06549 1.73102 1.21326 0.95993 0.77706 1.02919 1.22427 0.95654 0.95351 0.98281 0.89483 1.22716 0.97852 0.93646 1.01621 1.20954 0.90714 0.89817 0.92886 1.44815 1.26459 1.06627 1.57657 1.19454 0.98683 0.98646 1.20870 0.90196 1.25682 1.02453 0.95708 1.01905 1.70191 1.38708 1.01591 1.49241 0.85062 0.79568 0.76822 0.77906 1.21224 1.22032 1.19303 1.21723 0.93259 0.88868 0.94880 0.90101 0.87826 0.92123 0.70688 0.75320 0.91339 0.89679 0.89303 0.90652 0.97778 0.96612 0.94306 0.94072 0.96399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.01 71.24 0.71 -0.39 16 2 C -0.17 -3.03 6.34 -19.54 -0.12 -3.16 16 3 C -0.04 -0.37 12.24 67.14 0.82 0.45 16 4 O 0.13 2.27 11.18 71.92 0.80 3.08 16 5 N -0.35 -8.42 11.84 -49.51 -0.59 -9.00 16 6 C -0.06 -1.45 7.19 42.96 0.31 -1.14 16 7 C 0.59 17.22 7.85 86.93 0.68 17.90 16 8 O -0.55 -18.07 15.34 -3.72 -0.06 -18.13 16 9 N -0.71 -19.55 5.40 -465.49 -2.52 -22.06 16 10 C 0.14 4.02 5.12 86.38 0.44 4.47 16 11 C -0.10 -3.19 3.10 -9.40 -0.03 -3.22 16 12 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 13 C -0.12 -4.26 6.42 31.78 0.20 -4.06 16 14 C 0.18 9.07 5.38 86.73 0.47 9.53 16 15 N -0.63 -33.07 3.39 -691.98 -2.35 -35.42 16 16 C -0.25 -14.24 10.26 84.03 0.86 -13.38 16 17 H 0.08 4.42 7.84 -2.91 -0.02 4.39 16 18 C -0.06 -3.73 5.48 84.86 0.46 -3.27 16 19 N -0.95 -57.98 10.36 21.65 0.22 -57.76 16 20 Si 0.98 46.48 29.56 68.60 2.03 48.51 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 C 0.14 5.66 6.41 86.85 0.56 6.22 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 1.21 6.89 -2.39 -0.02 1.19 16 28 H 0.28 -0.53 8.06 -2.91 -0.02 -0.56 16 29 H 0.41 11.00 8.10 -92.71 -0.75 10.25 16 30 H 0.07 2.02 8.10 -2.38 -0.02 2.00 16 31 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.07 2.48 8.04 -2.39 -0.02 2.46 16 34 H 0.00 0.22 7.62 -2.39 -0.02 0.21 16 35 H 0.02 0.87 7.29 -2.39 -0.02 0.86 16 36 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.02 0.75 8.01 -2.39 -0.02 0.73 16 Total: -1.00 -74.86 321.31 3.24 -71.61 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.33 Total: 9.22 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.37 Total: 9.95 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -5.23 Total: -124.24 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.75 Total: -15.05 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -74.86 3.24 -71.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028914102.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.545 kcal (2) G-P(sol) polarization free energy of solvation -74.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds