Wall clock time and date at job start Tue Mar 31 2020 02:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30125 * 126.69953 * 2 1 4 4 O 1.20893 * 111.97926 * 179.97438 * 3 2 1 5 5 C 1.34638 * 111.46637 * 0.02562 * 4 3 2 6 6 C 1.47518 * 126.93971 * 179.97438 * 5 4 3 7 7 O 1.21586 * 119.99435 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00070 * 0.02754 * 6 5 4 9 9 C 1.46498 * 119.99859 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47283 * 179.97438 * 9 8 6 11 11 C 1.53951 * 113.74290 * 273.74236 * 10 9 8 12 12 N 1.47814 * 86.03372 * 222.08192 * 11 10 9 13 13 C 1.36938 * 134.45385 * 204.63658 * 12 11 10 14 14 H 1.08004 * 120.00092 * 179.86286 * 13 12 11 15 15 C 1.38810 * 120.00241 * 359.87506 * 13 12 11 16 16 N 1.31627 * 119.99607 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00509 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47039 * 59.99487 * 17 15 13 19 19 H 1.48490 * 109.47403 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46684 * 300.00079 * 17 15 13 21 21 C 1.47583 * 91.05208 * 24.54763 * 12 11 10 22 22 C 1.36816 * 106.11492 * 359.97438 * 5 4 3 23 23 C 1.50704 * 128.07856 * 179.97438 * 22 5 4 24 24 H 1.08997 * 109.47731 * 90.02329 * 1 2 3 25 25 H 1.09011 * 109.47091 * 210.02211 * 1 2 3 26 26 H 1.09002 * 109.47205 * 330.01765 * 1 2 3 27 27 H 0.97004 * 119.99943 * 359.97438 * 8 6 5 28 28 H 1.09000 * 109.47029 * 299.99695 * 9 8 6 29 29 H 1.09004 * 109.47429 * 59.99965 * 9 8 6 30 30 H 1.09006 * 112.94365 * 45.33101 * 10 9 8 31 31 H 1.08997 * 113.76589 * 336.34312 * 11 10 9 32 32 H 1.08997 * 113.76970 * 107.74540 * 11 10 9 33 33 H 0.97005 * 119.99374 * 180.02562 * 16 15 13 34 34 H 1.09005 * 113.76325 * 221.14958 * 21 12 11 35 35 H 1.08998 * 113.77080 * 89.75642 * 21 12 11 36 36 H 1.08997 * 109.47069 * 89.99684 * 23 22 5 37 37 H 1.08998 * 109.46973 * 209.99541 * 23 22 5 38 38 H 1.08998 * 109.47006 * 329.99817 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0433 0.0000 4 8 3.4539 0.7361 0.0005 5 6 3.6121 -0.6009 0.0004 6 6 4.8871 -1.3428 0.0003 7 8 4.8829 -2.5587 -0.0003 8 7 6.0565 -0.6729 0.0010 9 6 7.3227 -1.4098 0.0004 10 6 8.4891 -0.4196 0.0007 11 6 8.9018 0.0525 -1.4053 12 7 10.2950 -0.1044 -0.9371 13 6 11.4957 0.4467 -1.2975 14 1 12.3993 0.1573 -0.7815 15 6 11.5515 1.3774 -2.3258 16 7 10.4502 1.7299 -2.9548 17 14 13.1892 2.1297 -2.8171 18 1 14.1160 1.0552 -3.2550 19 1 12.9795 3.0870 -3.9327 20 1 13.7742 2.8444 -1.6542 21 6 9.8722 -1.0911 0.0757 22 6 2.3514 -1.1325 0.0003 23 6 1.9558 -2.5867 -0.0004 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3634 -0.8899 0.5142 26 1 -0.3634 0.8902 0.5136 27 1 6.0598 0.2971 0.0011 28 1 7.3783 -2.0374 0.8898 29 1 7.3784 -2.0358 -0.8902 30 1 8.3564 0.3930 0.7150 31 1 8.6249 -0.6401 -2.2001 32 1 8.6234 1.0838 -1.6219 33 1 10.4893 2.3800 -3.6737 34 1 10.3673 -0.9710 1.0394 35 1 9.8810 -2.1203 -0.2831 36 1 1.8606 -2.9378 1.0270 37 1 1.0016 -2.7033 -0.5141 38 1 2.7191 -3.1706 -0.5147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031755462.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:03 Heat of formation + Delta-G solvation = 73.257608 kcal Electronic energy + Delta-G solvation = -21112.705049 eV Core-core repulsion = 17767.411574 eV Total energy + Delta-G solvation = -3345.293475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.15669 -39.70227 -38.01737 -35.74369 -34.50911 -32.86342 -32.16292 -29.50619 -28.85347 -28.20784 -26.03548 -24.81701 -23.42915 -22.04571 -21.73973 -20.35349 -19.12952 -18.01945 -17.96586 -16.75834 -16.21960 -15.89462 -15.32582 -14.78121 -14.60491 -13.99759 -13.83878 -13.80038 -13.45316 -13.30514 -13.21738 -13.03788 -12.90662 -12.63077 -12.40336 -11.44236 -11.34895 -11.31508 -11.00806 -10.75156 -10.63618 -10.33736 -10.13337 -9.87229 -9.81894 -9.64591 -9.45802 -8.97437 -8.80237 -6.89078 -5.77299 -3.09720 0.67122 1.82313 2.53130 2.93669 3.21272 3.39743 3.43781 3.45160 3.82279 4.24761 4.44751 4.58939 4.71894 5.00185 5.13822 5.14454 5.24876 5.28889 5.33240 5.34986 5.40002 5.57397 5.61404 5.68034 5.78155 5.93240 6.01469 6.17071 6.28154 6.43739 6.59039 6.68847 7.20383 7.32550 7.35548 7.54201 7.89203 7.97407 8.01858 9.03978 9.70331 10.58693 11.39731 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031876 B = 0.003200 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.184621 B = 8746.970662 C = 9368.375804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.007 3.993 3 N -0.344 5.344 4 O 0.119 5.881 5 C -0.086 4.086 6 C 0.602 3.398 7 O -0.517 6.517 8 N -0.703 5.703 9 C 0.129 3.871 10 C -0.155 4.155 11 C 0.168 3.832 12 N -0.613 5.613 13 C -0.225 4.225 14 H 0.079 0.921 15 C -0.008 4.008 16 N -0.921 5.921 17 Si 0.913 3.087 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.130 3.870 22 C -0.123 4.123 23 C -0.084 4.084 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.409 0.591 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.254 0.746 34 H 0.046 0.954 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.070 -5.845 7.300 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.151 4.151 3 N -0.045 5.045 4 O 0.046 5.954 5 C -0.152 4.152 6 C 0.385 3.615 7 O -0.394 6.394 8 N -0.353 5.353 9 C 0.006 3.994 10 C -0.175 4.175 11 C 0.042 3.958 12 N -0.339 5.339 13 C -0.352 4.352 14 H 0.097 0.903 15 C -0.204 4.204 16 N -0.568 5.568 17 Si 0.743 3.257 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.211 1.211 21 C 0.003 3.997 22 C -0.128 4.128 23 C -0.141 4.141 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.245 0.755 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.041 -5.191 7.098 20.973 hybrid contribution 0.873 0.201 -0.461 1.007 sum -18.168 -4.990 6.638 19.975 Atomic orbital electron populations 1.20183 0.85395 1.03973 1.03615 1.23516 0.99219 0.88162 1.04213 1.73738 0.89352 1.24236 1.17178 1.84978 1.21251 1.21981 1.67158 1.24094 0.97169 0.83866 1.10058 1.16504 0.81069 0.86189 0.77751 1.90830 1.85996 1.11794 1.50780 1.46000 1.05508 1.11268 1.72570 1.21606 0.80718 0.94833 1.02288 1.23848 0.92877 0.98298 1.02463 1.22375 0.83476 1.00144 0.89781 1.45962 1.03938 1.45149 1.38819 1.18979 0.84467 1.17656 1.14114 0.90288 1.24785 0.97368 0.99888 0.98398 1.69803 1.25697 1.35666 1.25682 0.86196 0.82870 0.78776 0.77886 1.21200 1.21554 1.21073 1.22479 0.90376 0.93215 0.93637 1.21457 0.90302 0.98529 1.02475 1.20313 1.02564 0.87933 1.03298 0.89949 0.89818 0.90285 0.75516 0.91301 0.90787 0.88970 0.95422 0.90849 0.93584 0.93582 0.94599 0.90292 0.90925 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.39 36.01 0.37 -0.13 16 2 C 0.01 0.08 7.31 -82.17 -0.60 -0.52 16 3 N -0.34 -4.50 12.04 33.52 0.40 -4.10 16 4 O 0.12 1.57 11.04 15.56 0.17 1.74 16 5 C -0.09 -1.11 7.29 -36.32 -0.26 -1.38 16 6 C 0.60 8.43 7.82 -12.48 -0.10 8.33 16 7 O -0.52 -8.26 15.11 5.29 0.08 -8.18 16 8 N -0.70 -9.42 5.55 -61.36 -0.34 -9.77 16 9 C 0.13 1.87 5.51 -4.04 -0.02 1.85 16 10 C -0.15 -2.66 3.93 -89.70 -0.35 -3.02 16 11 C 0.17 3.78 7.08 -2.83 -0.02 3.76 16 12 N -0.61 -15.47 3.70 -177.70 -0.66 -16.13 16 13 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 14 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 15 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 16 N -0.92 -27.17 11.39 55.49 0.63 -26.54 16 17 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.13 2.53 8.51 -2.97 -0.03 2.50 16 22 C -0.12 -1.40 6.36 -103.99 -0.66 -2.06 16 23 C -0.08 -0.76 9.86 36.01 0.36 -0.40 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.41 4.99 8.30 -40.82 -0.34 4.65 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.15 7.87 -51.93 -0.41 0.74 16 30 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 32 H 0.07 1.83 7.17 -51.93 -0.37 1.46 16 33 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.97 6.73 -51.93 -0.35 0.62 16 LS Contribution 327.35 15.07 4.93 4.93 Total: -1.00 -32.56 327.35 -6.60 -39.17 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.23 Total: -0.37 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -1.57 Total: 2.16 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.04 Total: -56.53 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: 0.25 Total: -6.44 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.56 -6.60 -39.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031755462.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.426 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds