Wall clock time and date at job start Tue Mar 31 2020 01:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35318 * 126.66438 * 2 1 4 4 C 1.42278 * 103.92120 * 180.15142 * 3 2 1 5 5 C 1.48329 * 126.93711 * 179.89178 * 4 3 2 6 6 O 1.21492 * 120.00082 * 4.44211 * 5 4 3 7 7 N 1.34773 * 119.99886 * 184.44469 * 5 4 3 8 8 C 1.46502 * 120.00030 * 4.23989 * 7 5 4 9 9 C 1.46504 * 120.00158 * 184.51008 * 7 5 4 10 10 H 1.08995 * 110.88067 * 355.84645 * 9 7 5 11 11 C 1.55155 * 111.00072 * 119.72769 * 9 7 5 12 12 C 1.54327 * 102.94283 * 153.58055 * 11 9 7 13 13 N 1.47020 * 107.26662 * 337.80585 * 12 11 9 14 14 C 1.36944 * 125.64479 * 178.92008 * 13 12 11 15 15 H 1.08004 * 119.99663 * 180.02562 * 14 13 12 16 16 C 1.38806 * 119.99962 * 0.02562 * 14 13 12 17 17 N 1.31615 * 120.00344 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99866 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46959 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46843 * 119.99822 * 18 16 14 21 21 H 1.48498 * 109.47169 * 240.00070 * 18 16 14 22 22 C 1.47422 * 108.70540 * 358.94154 * 13 12 11 23 23 N 1.30981 * 106.12192 * 359.62591 * 4 3 2 24 24 O 1.20906 * 111.44029 * 0.23844 * 23 4 3 25 25 H 1.09004 * 109.46820 * 180.28588 * 1 2 3 26 26 H 1.08995 * 109.47398 * 300.28243 * 1 2 3 27 27 H 1.09001 * 109.47000 * 60.28753 * 1 2 3 28 28 H 1.07997 * 128.03942 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47362 * 84.25063 * 8 7 5 30 30 H 1.09004 * 109.47378 * 204.24951 * 8 7 5 31 31 H 1.08999 * 109.47151 * 324.24939 * 8 7 5 32 32 H 1.09008 * 110.72063 * 271.93764 * 11 9 7 33 33 H 1.08995 * 110.72415 * 35.03691 * 11 9 7 34 34 H 1.08997 * 109.88003 * 97.21991 * 12 11 9 35 35 H 1.08994 * 109.88160 * 218.23102 * 12 11 9 36 36 H 0.97001 * 120.00469 * 179.97438 * 17 16 14 37 37 H 1.09007 * 110.36348 * 265.29104 * 22 13 12 38 38 H 1.08995 * 110.36831 * 142.97232 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6271 0.5354 -0.0036 5 6 4.9075 1.2842 -0.0074 6 8 4.9026 2.4964 0.0739 7 7 6.0764 0.6199 -0.1011 8 6 6.0801 -0.8326 -0.2926 9 6 7.3433 1.3493 -0.0055 10 1 7.1690 2.4228 0.0665 11 6 8.1884 0.8414 1.1924 12 6 9.6336 1.1627 0.7569 13 7 9.6328 1.2754 -0.7090 14 6 10.7196 1.5732 -1.4872 15 1 10.6150 1.6334 -2.5605 16 6 11.9555 1.7977 -0.8965 17 7 12.0830 1.7239 0.4113 18 14 13.4381 2.2032 -1.9581 19 1 13.0329 2.2253 -3.3866 20 1 13.9719 3.5350 -1.5749 21 1 14.4879 1.1725 -1.7567 22 6 8.2681 1.0152 -1.2024 23 7 3.4761 -0.7657 0.0028 24 8 2.3073 -1.0749 0.0050 25 1 -0.3633 -1.0277 0.0051 26 1 -0.3634 0.5182 0.8874 27 1 -0.3633 0.5094 -0.8926 28 1 2.0301 2.1272 0.0004 29 1 5.9728 -1.0595 -1.3533 30 1 7.0202 -1.2450 0.0739 31 1 5.2502 -1.2739 0.2592 32 1 7.9308 1.3824 2.1031 33 1 8.0543 -0.2313 1.3318 34 1 9.9537 2.1053 1.2009 35 1 10.3020 0.3603 1.0690 36 1 12.9468 1.8804 0.8241 37 1 8.1601 -0.0322 -1.4845 38 1 8.0412 1.6624 -2.0495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032889557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:47 Heat of formation + Delta-G solvation = 72.069793 kcal Electronic energy + Delta-G solvation = -21758.928043 eV Core-core repulsion = 18413.583061 eV Total energy + Delta-G solvation = -3345.344983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.25034 -39.84568 -37.38865 -34.99977 -34.31825 -33.49678 -32.00597 -29.26215 -28.21498 -27.61184 -26.79475 -25.08708 -23.93199 -22.73622 -20.34442 -20.13245 -18.93991 -18.02369 -17.54849 -16.99371 -16.88237 -15.99478 -15.05991 -14.66429 -14.35051 -14.18852 -13.92863 -13.76678 -13.66219 -13.15368 -12.92188 -12.76444 -12.45769 -12.36961 -12.11377 -11.74727 -11.18377 -10.95116 -10.88490 -10.80895 -10.57104 -10.37576 -10.10070 -9.98735 -9.83429 -9.70417 -9.66124 -8.63846 -8.41728 -6.85649 -5.72113 -3.06522 0.96855 1.48909 2.67602 2.93704 3.15122 3.40518 3.45982 3.48525 3.81963 4.22669 4.50412 4.70102 4.85744 4.90618 4.99286 5.21733 5.32200 5.37658 5.40539 5.43471 5.60951 5.62461 5.69740 5.74726 5.78729 6.04137 6.17189 6.27215 6.47956 6.55763 6.65471 6.89613 7.42878 7.54584 7.59004 7.81129 7.82028 8.12922 8.23829 9.20242 9.80019 10.44870 11.39576 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.050453 B = 0.003387 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.844187 B = 8264.976510 C = 8298.839756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.035 4.035 3 C -0.186 4.186 4 C -0.013 4.013 5 C 0.591 3.409 6 O -0.527 6.527 7 N -0.583 5.583 8 C 0.064 3.936 9 C 0.121 3.879 10 H 0.109 0.891 11 C -0.153 4.153 12 C 0.180 3.820 13 N -0.603 5.603 14 C -0.228 4.228 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.132 3.868 23 N -0.328 5.328 24 O 0.112 5.888 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.180 0.820 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.252 0.748 37 H 0.024 0.976 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.970 -5.769 0.754 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 C -0.208 4.208 4 C -0.172 4.172 5 C 0.376 3.624 6 O -0.402 6.402 7 N -0.314 5.314 8 C -0.079 4.079 9 C 0.018 3.982 10 H 0.127 0.873 11 C -0.192 4.192 12 C 0.055 3.945 13 N -0.330 5.330 14 C -0.356 4.356 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.569 5.569 18 Si 0.744 3.256 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.005 3.995 23 N -0.032 5.032 24 O 0.039 5.961 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.197 0.803 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -21.810 -6.070 0.822 22.654 hybrid contribution 0.572 0.851 -0.498 1.140 sum -21.238 -5.219 0.323 21.872 Atomic orbital electron populations 1.20366 0.83534 1.04821 1.04348 1.24472 0.96473 0.85558 1.03334 1.22430 0.89771 1.01567 1.07051 1.23586 0.96839 0.90012 1.06745 1.16976 0.81516 0.86256 0.77649 1.90788 1.86323 1.12573 1.50491 1.47705 1.05498 1.08773 1.69437 1.22211 1.04317 0.79374 1.02020 1.22585 0.80572 0.97337 0.97683 0.87316 1.23275 0.98666 1.00311 0.96961 1.21146 0.88788 1.00835 0.83745 1.44393 1.03219 1.82868 1.02480 1.19106 0.85991 1.40652 0.89878 0.90287 1.24817 0.97711 1.01899 0.95987 1.69964 1.23360 1.55716 1.07873 0.86014 0.82696 0.77641 0.79225 1.20478 1.21698 1.21728 1.21735 0.85869 0.97820 0.94072 1.74278 0.96513 1.15524 1.16912 1.84804 1.11497 1.33696 1.66054 0.89702 0.88972 0.88972 0.80284 0.92529 0.90079 0.88940 0.91793 0.91977 0.93193 0.93536 0.93732 0.95870 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.44 36.00 0.38 0.11 16 2 C -0.04 -0.30 7.47 -35.35 -0.26 -0.56 16 3 C -0.19 -2.01 10.92 -39.07 -0.43 -2.44 16 4 C -0.01 -0.18 6.91 -82.53 -0.57 -0.75 16 5 C 0.59 10.13 7.70 -12.11 -0.09 10.04 16 6 O -0.53 -10.43 16.34 5.37 0.09 -10.34 16 7 N -0.58 -9.89 2.91 -172.41 -0.50 -10.39 16 8 C 0.06 0.91 8.44 59.85 0.51 1.42 16 9 C 0.12 2.37 3.44 -65.78 -0.23 2.15 16 10 H 0.11 2.32 7.02 -51.93 -0.36 1.95 16 11 C -0.15 -3.00 6.50 -24.90 -0.16 -3.17 16 12 C 0.18 4.45 5.37 -3.06 -0.02 4.43 16 13 N -0.60 -15.76 3.39 -170.08 -0.58 -16.33 16 14 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 15 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 16 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -27.31 10.31 55.49 0.57 -26.74 16 18 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 C 0.13 2.87 6.79 -2.53 -0.02 2.86 16 23 N -0.33 -4.21 8.61 33.29 0.29 -3.93 16 24 O 0.11 1.17 11.18 17.25 0.19 1.36 16 25 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.16 6.36 -51.93 -0.33 0.83 16 31 H 0.09 1.24 5.05 -51.93 -0.26 0.98 16 32 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 33 H 0.06 1.12 6.47 -51.93 -0.34 0.78 16 34 H 0.05 1.36 7.38 -51.93 -0.38 0.98 16 35 H 0.05 1.25 7.50 -51.93 -0.39 0.86 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.02 0.49 6.94 -51.93 -0.36 0.13 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -33.12 313.14 -6.32 -39.44 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -4.93 Total: -2.27 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -1.15 Total: 7.14 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.22 Total: -57.39 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.28 Total: -8.98 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.12 -6.32 -39.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032889557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.507 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds