Wall clock time and date at job start Tue Mar 31 2020 01:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41260 * 126.70836 * 2 1 4 4 C 1.36822 * 103.84858 * 180.02562 * 3 2 1 5 5 C 1.47513 * 126.94475 * 180.26316 * 4 3 2 6 6 O 1.21579 * 119.99970 * 353.46109 * 5 4 3 7 7 N 1.34774 * 120.00070 * 173.46800 * 5 4 3 8 8 C 1.46505 * 119.99991 * 3.41821 * 7 5 4 9 9 C 1.46497 * 120.00342 * 183.41507 * 7 5 4 10 10 H 1.09005 * 110.88072 * 356.12533 * 9 7 5 11 11 C 1.55162 * 111.00505 * 119.99447 * 9 7 5 12 12 C 1.54315 * 102.93986 * 153.57869 * 11 9 7 13 13 N 1.47017 * 107.27681 * 337.80982 * 12 11 9 14 14 C 1.36934 * 125.65404 * 178.91545 * 13 12 11 15 15 H 1.08003 * 120.00590 * 174.99002 * 14 13 12 16 16 C 1.38813 * 119.99760 * 354.99084 * 14 13 12 17 17 N 1.31622 * 120.00064 * 5.53382 * 16 14 13 18 18 Si 1.86801 * 120.00240 * 185.53793 * 16 14 13 19 19 H 1.48502 * 109.47190 * 94.99220 * 18 16 14 20 20 H 1.48494 * 109.47228 * 214.99823 * 18 16 14 21 21 H 1.48500 * 109.46993 * 334.99776 * 18 16 14 22 22 C 1.47430 * 108.70241 * 358.94336 * 13 12 11 23 23 O 1.34641 * 106.11202 * 0.02562 * 4 3 2 24 24 N 1.20893 * 111.46827 * 0.02562 * 23 4 3 25 25 H 1.08996 * 109.46878 * 270.00212 * 1 2 3 26 26 H 1.09000 * 109.46643 * 30.00088 * 1 2 3 27 27 H 1.09001 * 109.47295 * 149.99819 * 1 2 3 28 28 H 1.07996 * 128.07243 * 0.05898 * 3 2 1 29 29 H 1.08993 * 109.47451 * 84.14714 * 8 7 5 30 30 H 1.09001 * 109.47033 * 204.14795 * 8 7 5 31 31 H 1.09003 * 109.47118 * 324.14322 * 8 7 5 32 32 H 1.08993 * 110.72173 * 271.95036 * 11 9 7 33 33 H 1.09003 * 110.71552 * 35.03908 * 11 9 7 34 34 H 1.09003 * 109.88177 * 97.22885 * 12 11 9 35 35 H 1.09001 * 109.88351 * 218.23775 * 12 11 9 36 36 H 0.97003 * 119.99966 * 179.97438 * 17 16 14 37 37 H 1.08998 * 110.36363 * 265.29225 * 22 13 12 38 38 H 1.08996 * 110.36875 * 142.96822 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3514 1.1325 0.0000 4 6 3.6122 0.6009 -0.0006 5 6 4.8872 1.3428 0.0046 6 8 4.8866 2.5532 -0.1099 7 7 6.0526 0.6789 0.1360 8 6 6.0589 -0.7848 0.1985 9 6 7.3133 1.4208 0.2164 10 1 7.1439 2.4898 0.0869 11 6 8.0445 1.1317 1.5540 12 6 9.5255 1.3810 1.1992 13 7 9.6551 1.2393 -0.2584 14 6 10.8090 1.4045 -0.9769 15 1 10.8191 1.1991 -2.0372 16 6 11.9659 1.8358 -0.3425 17 7 11.9839 1.9815 0.9655 18 14 13.4970 2.2098 -1.3451 19 1 13.5464 3.6623 -1.6503 20 1 14.7031 1.8257 -0.5687 21 1 13.4586 1.4386 -2.6136 22 6 8.3367 0.8905 -0.8185 23 8 3.4540 -0.7361 -0.0015 24 7 2.2847 -1.0433 -0.0020 25 1 -0.3633 0.0000 1.0276 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 2.0679 2.1745 0.0009 29 1 6.0463 -1.1917 -0.8126 30 1 6.9574 -1.1226 0.7149 31 1 5.1776 -1.1291 0.7398 32 1 7.7129 1.8199 2.3314 33 1 7.8879 0.0983 1.8635 34 1 9.8145 2.3878 1.5009 35 1 10.1558 0.6480 1.7027 36 1 12.7925 2.2826 1.4088 37 1 8.2435 -0.1903 -0.9245 38 1 8.1917 1.3809 -1.7811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032908682.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:11 Heat of formation + Delta-G solvation = 66.631134 kcal Electronic energy + Delta-G solvation = -21804.555672 eV Core-core repulsion = 18458.974851 eV Total energy + Delta-G solvation = -3345.580821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.19845 -39.93703 -37.47471 -35.39492 -34.72593 -32.55010 -31.77249 -29.30623 -28.99183 -27.65630 -26.87772 -24.86808 -23.65972 -22.90345 -20.43213 -20.17010 -19.29124 -18.02111 -17.76088 -17.01924 -16.63664 -16.04698 -15.10885 -14.70755 -14.29796 -14.26748 -13.90875 -13.71301 -13.54766 -13.13412 -13.08629 -12.81515 -12.49784 -12.31331 -11.99362 -11.76529 -11.61602 -10.97730 -10.93309 -10.82500 -10.44653 -10.33805 -10.16690 -10.06025 -9.89341 -9.86807 -9.74886 -8.64486 -8.51713 -6.87921 -5.75185 -3.08885 0.66228 1.81767 2.45309 2.91527 3.07368 3.39970 3.45312 3.46967 3.81640 4.14735 4.48675 4.63500 4.79834 5.04366 5.12425 5.19209 5.25813 5.32102 5.36789 5.43154 5.53779 5.56181 5.68161 5.69484 5.76404 5.89052 6.10203 6.21595 6.44249 6.49775 6.59820 6.81560 7.29711 7.49773 7.58303 7.78770 7.79796 8.00146 8.21475 9.17802 9.77762 10.42464 11.36596 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.050208 B = 0.003415 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.546373 B = 8198.113798 C = 8230.746127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.010 3.990 3 C -0.158 4.158 4 C -0.070 4.070 5 C 0.598 3.402 6 O -0.515 6.515 7 N -0.583 5.583 8 C 0.068 3.932 9 C 0.121 3.879 10 H 0.111 0.889 11 C -0.153 4.153 12 C 0.178 3.822 13 N -0.602 5.602 14 C -0.230 4.230 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.920 5.920 18 Si 0.912 3.088 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.132 3.868 23 O 0.118 5.882 24 N -0.353 5.353 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.182 0.818 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.253 0.747 37 H 0.025 0.975 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.074 -4.876 0.326 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.148 4.148 3 C -0.180 4.180 4 C -0.136 4.136 5 C 0.382 3.618 6 O -0.392 6.392 7 N -0.314 5.314 8 C -0.075 4.075 9 C 0.018 3.982 10 H 0.129 0.871 11 C -0.192 4.192 12 C 0.053 3.947 13 N -0.329 5.329 14 C -0.358 4.358 15 H 0.097 0.903 16 C -0.202 4.202 17 N -0.567 5.567 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.206 1.206 22 C 0.004 3.996 23 O 0.047 5.953 24 N -0.057 5.057 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.200 0.800 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -20.040 -5.487 0.306 20.779 hybrid contribution 0.773 0.899 -0.427 1.260 sum -19.266 -4.589 -0.121 19.806 Atomic orbital electron populations 1.20197 0.85378 1.04059 1.03626 1.23629 0.99304 0.88379 1.03493 1.22850 0.89969 1.01715 1.03489 1.24351 0.97455 0.83798 1.07989 1.16654 0.80996 0.86058 0.78085 1.90866 1.85593 1.12203 1.50491 1.47777 1.06123 1.07792 1.69725 1.22060 1.03828 0.78792 1.02834 1.22638 0.80583 0.97274 0.97688 0.87142 1.23276 0.99173 1.00883 0.95871 1.21167 0.88043 1.01178 0.84284 1.44375 1.03223 1.82573 1.02753 1.19055 0.86215 1.38504 0.92062 0.90299 1.24836 0.98155 1.01326 0.95914 1.69961 1.27651 1.52324 1.06768 0.86093 0.82476 0.78221 0.78938 1.21543 1.21731 1.20597 1.21756 0.85828 0.97093 0.94891 1.85164 1.20921 1.22281 1.66960 1.73711 0.89747 1.24619 1.17587 0.89941 0.89733 0.90325 0.80019 0.91683 0.89354 0.90552 0.91689 0.91885 0.92901 0.93786 0.93659 0.95776 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.47 36.01 0.38 -0.10 16 2 C 0.01 0.10 7.31 -82.16 -0.60 -0.50 16 3 C -0.16 -1.74 10.92 -38.95 -0.43 -2.16 16 4 C -0.07 -0.90 6.89 -36.32 -0.25 -1.15 16 5 C 0.60 9.17 7.67 -12.48 -0.10 9.07 16 6 O -0.52 -9.37 16.30 5.30 0.09 -9.28 16 7 N -0.58 -8.78 2.91 -172.72 -0.50 -9.28 16 8 C 0.07 0.82 8.27 59.85 0.49 1.31 16 9 C 0.12 2.18 3.44 -65.78 -0.23 1.96 16 10 H 0.11 2.19 7.01 -51.93 -0.36 1.82 16 11 C -0.15 -2.79 6.50 -24.90 -0.16 -2.95 16 12 C 0.18 4.22 5.38 -3.07 -0.02 4.21 16 13 N -0.60 -15.14 3.39 -170.08 -0.58 -15.72 16 14 C -0.23 -6.35 10.27 -15.06 -0.15 -6.51 16 15 H 0.08 2.11 7.83 -52.48 -0.41 1.69 16 16 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 17 N -0.92 -26.69 10.34 55.49 0.57 -26.12 16 18 Si 0.91 21.94 29.56 -169.99 -5.02 16.92 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.13 2.68 6.79 -2.53 -0.02 2.66 16 23 O 0.12 1.45 7.99 15.55 0.12 1.57 16 24 N -0.35 -4.31 12.04 33.52 0.40 -3.91 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.07 6.36 -51.93 -0.33 0.74 16 31 H 0.08 0.82 5.42 -51.93 -0.28 0.54 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.04 6.47 -51.93 -0.34 0.70 16 34 H 0.05 1.40 7.26 -51.93 -0.38 1.02 16 35 H 0.04 1.14 7.64 -51.93 -0.40 0.74 16 36 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.02 0.47 6.94 -51.93 -0.36 0.11 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 313.42 15.07 4.72 4.72 Total: -1.00 -31.66 313.42 -6.32 -37.98 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.95 Total: -2.47 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.17 Total: 5.58 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.10 Total: -55.03 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.21 Total: -7.70 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.66 -6.32 -37.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032908682.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.610 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds