Wall clock time and date at job start Tue Mar 31 2020 02:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33692 * 126.27845 * 2 1 4 4 C 1.30616 * 108.99676 * 180.25331 * 3 2 1 5 5 O 1.33665 * 109.15478 * 359.76901 * 4 3 2 6 6 C 1.35343 * 107.68174 * 359.97438 * 5 4 3 7 7 C 1.46731 * 126.63967 * 179.97438 * 6 5 4 8 8 O 1.21684 * 119.99900 * 187.38040 * 7 6 5 9 9 N 1.34774 * 119.99691 * 7.38046 * 7 6 5 10 10 C 1.46497 * 120.00638 * 355.98888 * 9 7 6 11 11 C 1.46505 * 119.99487 * 175.98675 * 9 7 6 12 12 H 1.08994 * 110.64221 * 1.68405 * 11 9 7 13 13 C 1.55153 * 110.71922 * 125.02718 * 11 9 7 14 14 C 1.55132 * 101.48863 * 82.69501 * 13 11 9 15 15 N 1.47429 * 104.72225 * 37.29148 * 14 13 11 16 16 C 1.36933 * 125.64390 * 155.81449 * 15 14 13 17 17 H 1.07998 * 119.99658 * 187.89739 * 16 15 14 18 18 C 1.38810 * 120.00255 * 7.90549 * 16 15 14 19 19 N 1.31622 * 120.00285 * 7.13710 * 18 16 15 20 20 Si 1.86800 * 120.00225 * 187.13923 * 18 16 15 21 21 H 1.48509 * 109.47025 * 265.00240 * 20 18 16 22 22 H 1.48504 * 109.47085 * 24.99623 * 20 18 16 23 23 H 1.48493 * 109.47734 * 144.99955 * 20 18 16 24 24 C 1.47016 * 108.70231 * 335.55697 * 15 14 13 25 25 H 1.08998 * 109.47503 * 270.14147 * 1 2 3 26 26 H 1.08996 * 109.46910 * 30.14126 * 1 2 3 27 27 H 1.09007 * 109.47558 * 150.13865 * 1 2 3 28 28 H 1.07998 * 125.42237 * 179.74352 * 4 3 2 29 29 H 1.09001 * 109.46927 * 275.66228 * 10 9 7 30 30 H 1.09004 * 109.47161 * 35.65380 * 10 9 7 31 31 H 1.08999 * 109.47763 * 155.65880 * 10 9 7 32 32 H 1.09003 * 111.00327 * 200.93271 * 13 11 9 33 33 H 1.08999 * 111.00211 * 324.74700 * 13 11 9 34 34 H 1.08998 * 110.49522 * 278.45378 * 14 13 11 35 35 H 1.09001 * 110.34484 * 156.06290 * 14 13 11 36 36 H 0.96994 * 120.00187 * 180.02562 * 19 18 16 37 37 H 1.09004 * 109.88101 * 120.70352 * 24 15 14 38 38 H 1.08997 * 109.88469 * 241.86548 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6897 -0.0055 5 8 3.5889 -0.6462 -0.0040 6 6 2.3136 -1.0992 0.0032 7 6 1.8825 -2.5018 0.0067 8 8 0.7041 -2.7764 -0.1222 9 7 2.7918 -3.4858 0.1525 10 6 4.2187 -3.1607 0.2194 11 6 2.3532 -4.8806 0.2443 12 1 1.2697 -4.9498 0.1480 13 6 3.0603 -5.7501 -0.8286 14 6 4.4144 -6.0552 -0.1358 15 7 4.0745 -6.2371 1.2872 16 6 4.8046 -6.9547 2.1966 17 1 4.4085 -7.1358 3.1848 18 6 6.0540 -7.4493 1.8484 19 7 6.5980 -7.1125 0.6981 20 14 6.9633 -8.5931 3.0121 21 1 7.9018 -7.8034 3.8495 22 1 5.9855 -9.2892 3.8866 23 1 7.7256 -9.5959 2.2257 24 6 2.8253 -5.5153 1.5695 25 1 -0.3634 0.0025 1.0276 26 1 -0.3633 0.8887 -0.5160 27 1 -0.3634 -0.8913 -0.5117 28 1 4.4043 1.3441 -0.0107 29 1 4.6183 -3.0698 -0.7906 30 1 4.3521 -2.2174 0.7491 31 1 4.7475 -3.9529 0.7494 32 1 2.5008 -6.6657 -1.0204 33 1 3.2121 -5.1872 -1.7496 34 1 5.1024 -5.2186 -0.2575 35 1 4.8504 -6.9681 -0.5415 36 1 7.4708 -7.4584 0.4547 37 1 2.0704 -6.2105 1.9371 38 1 3.0065 -4.7361 2.3098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032978561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:13 Heat of formation + Delta-G solvation = 12.566625 kcal Electronic energy + Delta-G solvation = -22432.520477 eV Core-core repulsion = 19084.595243 eV Total energy + Delta-G solvation = -3347.925234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.49623 -41.21058 -39.10143 -36.67345 -35.77192 -34.03679 -32.62473 -31.10154 -29.77749 -28.92929 -27.63805 -26.28658 -24.72636 -23.23363 -22.10413 -21.80526 -20.51548 -18.96293 -18.61035 -18.11601 -17.86674 -17.28244 -16.72608 -16.20823 -15.79633 -15.76426 -15.48438 -14.55419 -14.50671 -14.24288 -13.99214 -13.89337 -13.65749 -13.35243 -13.33513 -13.16070 -12.92020 -12.77458 -12.47103 -12.16098 -12.11531 -11.99053 -11.86802 -11.67481 -11.53096 -11.12588 -10.63475 -10.13903 -9.69430 -8.85662 -7.85608 -5.20421 -0.24047 1.38396 1.39379 1.48297 1.49450 1.58449 1.89188 2.01010 2.50460 3.14414 3.33883 3.42992 3.67750 3.69066 3.82327 3.96527 4.20219 4.25424 4.41354 4.43396 4.56561 4.63643 4.65014 4.69297 4.83989 4.85652 4.89330 4.98319 5.02948 5.14410 5.33178 5.43504 5.49399 5.61750 5.77731 6.15686 6.22291 6.51285 6.82999 7.10393 7.76027 8.41637 9.24678 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030490 B = 0.004424 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.105148 B = 6326.958834 C = 6743.143360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.076 3.924 3 N -0.522 5.522 4 C 0.221 3.779 5 O -0.189 6.189 6 C -0.136 4.136 7 C 0.603 3.397 8 O -0.545 6.545 9 N -0.585 5.585 10 C 0.075 3.925 11 C 0.138 3.862 12 H 0.115 0.885 13 C -0.140 4.140 14 C 0.168 3.832 15 N -0.618 5.618 16 C -0.243 4.243 17 H 0.076 0.924 18 C -0.055 4.055 19 N -0.943 5.943 20 Si 0.973 3.027 21 H -0.288 1.288 22 H -0.273 1.273 23 H -0.294 1.294 24 C 0.127 3.873 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.306 0.694 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.024 0.976 35 H 0.041 0.959 36 H 0.248 0.752 37 H 0.042 0.958 38 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 14.345 -3.179 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 N -0.251 5.251 4 C -0.004 4.004 5 O -0.075 6.075 6 C -0.190 4.190 7 C 0.392 3.608 8 O -0.426 6.426 9 N -0.315 5.315 10 C -0.067 4.067 11 C 0.034 3.966 12 H 0.132 0.868 13 C -0.179 4.179 14 C 0.044 3.956 15 N -0.345 5.345 16 C -0.372 4.372 17 H 0.094 0.906 18 C -0.249 4.249 19 N -0.592 5.592 20 Si 0.802 3.198 21 H -0.215 1.215 22 H -0.198 1.198 23 H -0.220 1.220 24 C 0.001 3.999 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.321 0.679 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.018 14.651 -3.217 16.561 hybrid contribution 1.273 -1.321 0.617 1.935 sum -5.745 13.330 -2.601 14.747 Atomic orbital electron populations 1.20428 0.84580 1.04612 1.04153 1.22357 0.99164 0.86449 0.96770 1.70398 1.02380 1.31223 1.21076 1.29626 0.98301 0.79561 0.92870 1.84754 1.28599 1.25030 1.69143 1.22608 0.82340 0.95546 1.18550 1.16649 0.85163 0.82103 0.76883 1.90783 1.16800 1.82275 1.52693 1.47740 1.07683 1.06220 1.69839 1.22217 0.79507 1.02388 1.02608 1.22046 1.00014 0.78993 0.95499 0.86753 1.23256 0.97946 0.99423 0.97323 1.21583 0.92161 0.98960 0.82904 1.44724 1.24448 1.58535 1.06837 1.19340 0.97616 1.25509 0.94706 0.90615 1.25506 0.97575 1.02609 0.99185 1.70104 1.17071 1.48446 1.23547 0.85146 0.78311 0.78416 0.77910 1.21461 1.19771 1.22012 1.21721 0.89053 0.94065 0.95039 0.89406 0.88974 0.89581 0.67904 0.91748 0.89731 0.90238 0.89820 0.90163 0.95815 0.94041 0.94225 0.94041 0.96104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 9.95 71.23 0.71 -1.07 16 2 C 0.08 1.97 7.16 41.83 0.30 2.27 16 3 N -0.52 -11.88 11.26 -303.13 -3.41 -15.29 16 4 C 0.22 3.68 13.21 130.42 1.72 5.40 16 5 O -0.19 -4.38 7.49 -7.08 -0.05 -4.44 16 6 C -0.14 -3.82 6.79 24.05 0.16 -3.66 16 7 C 0.60 19.59 7.64 86.46 0.66 20.25 16 8 O -0.54 -19.17 14.15 -4.30 -0.06 -19.24 16 9 N -0.58 -19.49 2.82 -820.60 -2.32 -21.81 16 10 C 0.07 2.42 7.91 127.77 1.01 3.43 16 11 C 0.14 4.86 3.58 46.18 0.17 5.03 16 12 H 0.11 3.85 6.99 -2.39 -0.02 3.84 16 13 C -0.14 -5.06 6.54 32.06 0.21 -4.85 16 14 C 0.17 7.75 4.60 86.93 0.40 8.15 16 15 N -0.62 -30.36 2.98 -691.54 -2.06 -32.42 16 16 C -0.24 -13.17 10.25 84.03 0.86 -12.31 16 17 H 0.08 4.00 7.84 -2.91 -0.02 3.98 16 18 C -0.05 -3.00 5.43 84.86 0.46 -2.54 16 19 N -0.94 -53.79 10.51 21.65 0.23 -53.57 16 20 Si 0.97 44.41 29.56 68.60 2.03 46.44 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 C 0.13 5.21 6.29 86.73 0.55 5.76 16 25 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.09 2.11 6.35 -2.38 -0.02 2.09 16 28 H 0.31 1.14 8.06 -2.91 -0.02 1.11 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.08 2.45 5.37 -2.38 -0.01 2.43 16 31 H 0.08 3.18 4.76 -2.39 -0.01 3.17 16 32 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.02 1.15 5.49 -2.39 -0.01 1.13 16 35 H 0.04 2.20 6.69 -2.39 -0.02 2.18 16 36 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 37 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.02 0.89 8.04 -2.39 -0.02 0.87 16 Total: -1.00 -67.06 306.21 2.65 -64.41 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.08 Total: 10.04 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 7.21 Total: 25.87 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -7.56 Total: -123.08 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.11 Total: -23.67 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -67.06 2.65 -64.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032978561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.979 kcal (2) G-P(sol) polarization free energy of solvation -67.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds