Wall clock time and date at job start Tue Mar 31 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29925 * 125.37564 * 2 1 4 4 C 1.36071 * 108.47768 * 179.97438 * 3 2 1 5 5 C 1.47420 * 126.44987 * 180.02562 * 4 3 2 6 6 O 1.21619 * 119.99778 * 173.41604 * 5 4 3 7 7 N 1.34773 * 120.00053 * 353.41482 * 5 4 3 8 8 C 1.46500 * 120.00044 * 3.42690 * 7 5 4 9 9 C 1.46503 * 119.99851 * 183.42774 * 7 5 4 10 10 H 1.09002 * 110.88466 * 356.11754 * 9 7 5 11 11 C 1.55161 * 111.00230 * 119.99835 * 9 7 5 12 12 C 1.54329 * 102.94031 * 153.57516 * 11 9 7 13 13 N 1.47027 * 107.27196 * 337.80826 * 12 11 9 14 14 C 1.36929 * 125.64864 * 178.91658 * 13 12 11 15 15 H 1.08001 * 120.00108 * 180.02562 * 14 13 12 16 16 C 1.38812 * 120.00158 * 0.03172 * 14 13 12 17 17 N 1.31617 * 119.99800 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00047 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46868 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47033 * 119.99621 * 18 16 14 21 21 H 1.48496 * 109.46975 * 239.99532 * 18 16 14 22 22 C 1.47428 * 108.70102 * 358.94183 * 13 12 11 23 23 C 1.36094 * 107.10069 * 359.97438 * 4 3 2 24 24 O 1.34048 * 125.37508 * 179.68993 * 2 1 3 25 25 H 1.08998 * 109.47048 * 90.00552 * 1 2 3 26 26 H 1.09004 * 109.46834 * 209.99862 * 1 2 3 27 27 H 1.08996 * 109.47430 * 330.00123 * 1 2 3 28 28 H 1.09000 * 109.46806 * 84.08452 * 8 7 5 29 29 H 1.08997 * 109.46730 * 204.08323 * 8 7 5 30 30 H 1.08997 * 109.47046 * 324.07842 * 8 7 5 31 31 H 1.08996 * 110.72124 * 271.93702 * 11 9 7 32 32 H 1.08994 * 110.72223 * 35.03861 * 11 9 7 33 33 H 1.08999 * 109.87853 * 97.22338 * 12 11 9 34 34 H 1.08993 * 109.88239 * 218.23454 * 12 11 9 35 35 H 0.97002 * 119.99517 * 180.02562 * 17 16 14 36 36 H 1.09005 * 110.36333 * 265.29113 * 22 13 12 37 37 H 1.09002 * 110.36792 * 142.96836 * 22 13 12 38 38 H 1.07992 * 126.52536 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7439 1.5439 0.0013 6 8 5.8563 1.0674 0.1225 7 7 4.5925 2.8764 -0.1324 8 6 3.2495 3.4576 -0.2030 9 6 5.7708 3.7437 -0.2071 10 1 6.6864 3.1678 -0.0719 11 6 5.7998 4.5283 -1.5454 12 6 6.6095 5.7924 -1.1874 13 7 6.5221 5.9687 0.2696 14 6 7.1237 6.9655 0.9904 15 1 6.9981 7.0081 2.0622 16 6 7.8949 7.9213 0.3435 17 7 8.0483 7.8692 -0.9627 18 14 8.7150 9.2815 1.3267 19 1 8.3885 9.1176 2.7661 20 1 10.1866 9.2083 1.1410 21 1 8.2215 10.6001 0.8546 22 6 5.6799 4.8942 0.8261 23 6 3.5660 -0.6971 0.0015 24 8 2.2831 -1.0930 0.0059 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 2.8644 3.6060 0.8059 29 1 3.2954 4.4165 -0.7191 30 1 2.5898 2.7827 -0.7482 31 1 6.3067 3.9520 -2.3194 32 1 4.7900 4.7904 -1.8608 33 1 7.6505 5.6619 -1.4832 34 1 6.1862 6.6596 -1.6942 35 1 8.5875 8.5370 -1.4147 36 1 4.6489 5.2337 0.9260 37 1 6.0684 4.5690 1.7912 38 1 4.4361 -1.3367 0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033027361.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:51 Heat of formation + Delta-G solvation = 8.176082 kcal Electronic energy + Delta-G solvation = -21803.235470 eV Core-core repulsion = 18455.119848 eV Total energy + Delta-G solvation = -3348.115622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.45943 -41.08659 -39.00620 -36.53124 -35.79154 -34.03241 -33.07725 -31.14246 -29.36826 -28.75950 -27.82329 -26.64580 -24.97577 -22.75858 -22.08641 -21.72813 -20.41893 -18.96329 -18.80654 -17.98114 -17.87569 -17.19059 -16.70509 -16.24183 -15.94480 -15.57392 -15.03329 -14.81206 -14.41691 -14.25185 -14.07861 -13.95661 -13.82373 -13.66768 -13.40737 -13.20159 -12.93155 -12.77032 -12.49586 -12.22006 -12.13302 -11.99319 -11.85535 -11.65852 -11.45955 -11.12647 -10.74849 -10.10035 -9.66196 -8.94336 -7.87254 -5.24578 0.05371 0.96164 1.45904 1.47531 1.57222 1.58967 1.83357 2.13454 2.49104 2.85592 3.31397 3.52147 3.64050 3.80978 3.86501 3.93727 4.14524 4.30867 4.43064 4.52669 4.54357 4.59841 4.65891 4.73077 4.77129 4.79859 4.84108 4.93621 5.03880 5.16893 5.33802 5.41267 5.52111 5.58608 5.69898 6.15042 6.24022 6.49708 6.94996 7.06491 7.71420 8.35834 9.23216 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.041681 B = 0.003538 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.609591 B = 7913.229953 C = 8072.762339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.202 3.798 3 N -0.481 5.481 4 C -0.094 4.094 5 C 0.592 3.408 6 O -0.576 6.576 7 N -0.584 5.584 8 C 0.079 3.921 9 C 0.137 3.863 10 H 0.086 0.914 11 C -0.134 4.134 12 C 0.190 3.810 13 N -0.624 5.624 14 C -0.246 4.246 15 H 0.083 0.917 16 C -0.064 4.064 17 N -0.950 5.950 18 Si 0.983 3.017 19 H -0.266 1.266 20 H -0.292 1.292 21 H -0.289 1.289 22 C 0.134 3.866 23 C 0.028 3.972 24 O -0.195 6.195 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.013 0.987 34 H 0.018 0.982 35 H 0.248 0.752 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.294 -18.130 0.110 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.007 4.007 3 N -0.212 5.212 4 C -0.213 4.213 5 C 0.381 3.619 6 O -0.457 6.457 7 N -0.313 5.313 8 C -0.062 4.062 9 C 0.032 3.968 10 H 0.104 0.896 11 C -0.173 4.173 12 C 0.065 3.935 13 N -0.351 5.351 14 C -0.375 4.375 15 H 0.100 0.900 16 C -0.257 4.257 17 N -0.599 5.599 18 Si 0.811 3.189 19 H -0.190 1.190 20 H -0.219 1.219 21 H -0.215 1.215 22 C 0.008 3.992 23 C -0.046 4.046 24 O -0.081 6.081 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.032 0.968 34 H 0.036 0.964 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -17.861 -17.567 0.157 25.052 hybrid contribution 1.338 0.463 0.314 1.451 sum -16.523 -17.104 0.471 23.786 Atomic orbital electron populations 1.20634 0.77493 1.06833 1.06534 1.27481 0.98215 0.77657 0.97360 1.70916 1.00343 1.30190 1.19720 1.21468 0.91786 0.93492 1.14515 1.17236 0.86732 0.81820 0.76079 1.90785 1.26350 1.75606 1.52971 1.47620 1.08333 1.05366 1.69992 1.22242 0.81192 0.99931 1.02866 1.22063 0.88263 0.90207 0.96254 0.89577 1.23062 1.01370 0.96436 0.96393 1.20867 0.96157 0.92834 0.83678 1.44670 1.57574 1.29200 1.03689 1.19488 1.23724 1.02819 0.91434 0.89956 1.25693 1.01271 1.01726 0.97013 1.70183 1.44301 1.37185 1.08191 0.84951 0.77440 0.78408 0.78140 1.19033 1.21878 1.21550 1.21815 0.94656 0.87664 0.95068 1.25640 0.85661 0.94928 0.98376 1.84432 1.16371 1.38085 1.69208 0.86825 0.87023 0.87038 0.92377 0.91271 0.87059 0.90580 0.89832 0.96830 0.96398 0.94222 0.94354 0.94662 0.73191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.30 10.51 71.24 0.75 0.45 16 2 C 0.20 3.18 8.30 88.39 0.73 3.91 16 3 N -0.48 -10.71 7.86 -293.04 -2.30 -13.01 16 4 C -0.09 -2.46 6.66 40.41 0.27 -2.19 16 5 C 0.59 19.89 7.67 86.66 0.66 20.55 16 6 O -0.58 -22.70 16.28 -4.09 -0.07 -22.76 16 7 N -0.58 -19.54 2.91 -818.69 -2.38 -21.92 16 8 C 0.08 2.16 8.19 127.77 1.05 3.21 16 9 C 0.14 5.43 3.44 46.38 0.16 5.59 16 10 H 0.09 3.81 7.01 -2.39 -0.02 3.79 16 11 C -0.13 -5.28 6.50 31.79 0.21 -5.07 16 12 C 0.19 9.76 5.37 86.73 0.47 10.23 16 13 N -0.62 -33.62 3.39 -691.97 -2.35 -35.97 16 14 C -0.25 -14.26 10.28 84.03 0.86 -13.39 16 15 H 0.08 4.58 7.83 -2.91 -0.02 4.55 16 16 C -0.06 -3.72 5.49 84.86 0.47 -3.25 16 17 N -0.95 -58.12 10.31 21.65 0.22 -57.89 16 18 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 22 C 0.13 5.93 6.79 86.85 0.59 6.52 16 23 C 0.03 0.55 11.95 67.32 0.80 1.36 16 24 O -0.19 -3.26 10.73 0.34 0.00 -3.26 16 25 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.11 0.13 8.14 -2.38 -0.02 0.11 16 27 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.90 6.36 -2.39 -0.02 1.88 16 30 H 0.11 2.75 5.31 -2.39 -0.01 2.74 16 31 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.08 2.95 6.47 -2.39 -0.02 2.93 16 33 H 0.01 0.78 7.38 -2.39 -0.02 0.76 16 34 H 0.02 1.00 7.50 -2.39 -0.02 0.98 16 35 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.04 1.60 6.94 -2.38 -0.02 1.59 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.25 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -75.36 313.54 3.25 -72.11 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 1.07 Total: 6.12 kcal Atomic # 6 Polarization: 20.90 SS G_CDS: 7.02 Total: 27.92 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -6.81 Total: -128.80 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.06 Total: -26.02 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -75.36 3.25 -72.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033027361.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.284 kcal (2) G-P(sol) polarization free energy of solvation -75.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds