Wall clock time and date at job start Tue Mar 31 2020 02:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35310 * 128.04091 * 2 1 4 4 O 1.34017 * 106.67037 * 180.24132 * 3 2 1 5 5 N 1.20906 * 111.84585 * 359.74436 * 4 3 2 6 6 C 1.30978 * 111.43804 * 0.02562 * 5 4 3 7 7 C 1.48339 * 126.93858 * 179.97438 * 6 5 4 8 8 O 1.21493 * 119.99905 * 186.32637 * 7 6 5 9 9 N 1.34773 * 119.99601 * 6.32848 * 7 6 5 10 10 C 1.46498 * 120.00445 * 356.13068 * 9 7 6 11 11 C 1.46502 * 119.99627 * 176.13464 * 9 7 6 12 12 H 1.08996 * 110.64427 * 1.68539 * 11 9 7 13 13 C 1.55157 * 110.71812 * 125.02295 * 11 9 7 14 14 C 1.55131 * 101.48880 * 82.69549 * 13 11 9 15 15 N 1.47428 * 104.72106 * 37.29429 * 14 13 11 16 16 C 1.36934 * 125.64814 * 155.82255 * 15 14 13 17 17 H 1.08004 * 119.99841 * 186.08935 * 16 15 14 18 18 C 1.38807 * 120.00335 * 6.08726 * 16 15 14 19 19 N 1.31627 * 119.99593 * 34.80468 * 18 16 15 20 20 Si 1.86797 * 120.00341 * 214.80479 * 18 16 15 21 21 H 1.48496 * 109.47101 * 179.97438 * 20 18 16 22 22 H 1.48490 * 109.47232 * 300.00263 * 20 18 16 23 23 H 1.48502 * 109.46768 * 60.00091 * 20 18 16 24 24 C 1.47022 * 108.70087 * 335.55321 * 15 14 13 25 25 H 1.09000 * 109.47082 * 270.16166 * 1 2 3 26 26 H 1.08995 * 109.46907 * 30.16618 * 1 2 3 27 27 H 1.09000 * 109.46628 * 150.16349 * 1 2 3 28 28 H 1.07999 * 126.66641 * 359.94897 * 3 2 1 29 29 H 1.08997 * 109.47400 * 275.33626 * 10 9 7 30 30 H 1.09010 * 109.46740 * 35.33299 * 10 9 7 31 31 H 1.08994 * 109.47330 * 155.33092 * 10 9 7 32 32 H 1.09001 * 111.00128 * 200.93091 * 13 11 9 33 33 H 1.09000 * 111.00867 * 324.74404 * 13 11 9 34 34 H 1.09000 * 110.49649 * 278.45863 * 14 13 11 35 35 H 1.08998 * 110.34500 * 156.05759 * 14 13 11 36 36 H 0.97001 * 119.99686 * 355.89049 * 19 18 16 37 37 H 1.09001 * 109.88256 * 120.70698 * 24 15 14 38 38 H 1.08999 * 109.88505 * 241.86942 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5773 -0.0054 5 7 3.5989 -0.6317 -0.0036 6 6 2.3838 -1.1205 0.0027 7 6 1.9992 -2.5532 0.0061 8 8 0.8312 -2.8689 -0.1041 9 7 2.9456 -3.5045 0.1314 10 6 4.3607 -3.1284 0.1790 11 6 2.5591 -4.9149 0.2200 12 1 1.4775 -5.0228 0.1395 13 6 3.2807 -5.7512 -0.8696 14 6 4.6554 -6.0116 -0.1994 15 7 4.3441 -6.2149 1.2272 16 6 5.1135 -6.9114 2.1206 17 1 4.7514 -7.0878 3.1226 18 6 6.3589 -7.3906 1.7383 19 7 7.1014 -6.6986 0.9001 20 14 6.9812 -9.0174 2.4132 21 1 8.3270 -9.3029 1.8542 22 1 7.0659 -8.9392 3.8936 23 1 6.0449 -10.1038 2.0276 24 6 3.0740 -5.5406 1.5334 25 1 -0.3633 0.0029 1.0277 26 1 -0.3633 0.8885 -0.5164 27 1 -0.3632 -0.8915 -0.5113 28 1 2.0560 2.1074 -0.0008 29 1 4.7428 -3.0223 -0.8363 30 1 4.4673 -2.1814 0.7082 31 1 4.9248 -3.9016 0.7005 32 1 2.7518 -6.6852 -1.0593 33 1 3.3980 -5.1774 -1.7889 34 1 5.3108 -5.1498 -0.3255 35 1 5.1178 -6.9055 -0.6179 36 1 6.7543 -5.8843 0.5035 37 1 2.3505 -6.2650 1.9074 38 1 3.2383 -4.7602 2.2763 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033562887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:35 Heat of formation + Delta-G solvation = 55.279000 kcal Electronic energy + Delta-G solvation = -22424.082670 eV Core-core repulsion = 19078.009584 eV Total energy + Delta-G solvation = -3346.073086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.17910 -41.46283 -39.35061 -36.36959 -35.74990 -34.39280 -33.14914 -31.08372 -29.94282 -29.15779 -27.87210 -26.50654 -25.42603 -22.74833 -22.35488 -22.12005 -20.57135 -19.71401 -18.93065 -18.80585 -18.19466 -17.36577 -16.61999 -16.36847 -15.85784 -15.63621 -15.15515 -15.04937 -14.58844 -14.31053 -14.26571 -14.08260 -13.80437 -13.73846 -13.55967 -13.07938 -12.77514 -12.67353 -12.47385 -12.35646 -12.05692 -12.02431 -11.87206 -11.69945 -11.38449 -11.23971 -10.41295 -10.39026 -9.93068 -9.05924 -8.47613 -5.26486 0.02511 0.70227 1.54735 1.57037 1.65090 1.84172 1.90008 2.27859 2.59322 2.75979 3.14971 3.35698 3.46798 3.60612 3.72257 3.81695 4.03639 4.07010 4.12649 4.31775 4.34857 4.41582 4.46252 4.69689 4.76034 4.78596 4.79983 4.82432 4.87875 4.94918 5.02498 5.15833 5.32104 5.36027 5.62420 6.05190 6.29402 6.69124 6.83667 7.06916 7.69156 8.25574 8.95373 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032910 B = 0.004365 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.608377 B = 6413.042825 C = 6855.518570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.171 4.171 3 C -0.034 4.034 4 O 0.128 5.872 5 N -0.347 5.347 6 C -0.058 4.058 7 C 0.591 3.409 8 O -0.549 6.549 9 N -0.584 5.584 10 C 0.077 3.923 11 C 0.137 3.863 12 H 0.119 0.881 13 C -0.128 4.128 14 C 0.139 3.861 15 N -0.619 5.619 16 C -0.361 4.361 17 H 0.061 0.939 18 C -0.071 4.071 19 N -0.937 5.937 20 Si 1.118 2.882 21 H -0.291 1.291 22 H -0.276 1.276 23 H -0.282 1.282 24 C 0.131 3.869 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.279 0.721 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.025 0.975 35 H 0.024 0.976 36 H 0.258 0.742 37 H 0.044 0.956 38 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.838 16.804 -4.046 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.176 4.176 3 C -0.114 4.114 4 O 0.051 5.949 5 N -0.047 5.047 6 C -0.215 4.215 7 C 0.379 3.621 8 O -0.427 6.427 9 N -0.315 5.315 10 C -0.066 4.066 11 C 0.033 3.967 12 H 0.136 0.864 13 C -0.167 4.167 14 C 0.014 3.986 15 N -0.347 5.347 16 C -0.489 4.489 17 H 0.079 0.921 18 C -0.268 4.268 19 N -0.580 5.580 20 Si 0.942 3.058 21 H -0.217 1.217 22 H -0.202 1.202 23 H -0.209 1.209 24 C 0.004 3.996 25 H 0.097 0.903 26 H 0.125 0.875 27 H 0.080 0.920 28 H 0.294 0.706 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -9.911 14.889 -3.996 18.327 hybrid contribution -1.618 0.974 0.190 1.898 sum -11.529 15.863 -3.806 19.976 Atomic orbital electron populations 1.20238 0.85443 1.04300 1.03499 1.21699 1.00086 0.89648 1.06171 1.26720 0.80370 1.02707 1.01628 1.84774 1.31056 1.14619 1.64455 1.74394 1.21444 0.92452 1.16441 1.23413 0.90861 0.96534 1.10665 1.17311 0.84874 0.83411 0.76511 1.90703 1.18154 1.82084 1.51724 1.47743 1.07416 1.06261 1.70072 1.22224 0.80024 1.01999 1.02338 1.22065 1.00582 0.78765 0.95250 0.86355 1.23098 0.96079 1.00300 0.97200 1.21757 0.94890 0.97628 0.84325 1.44808 1.22231 1.62142 1.05562 1.19911 1.01788 1.31415 0.95784 0.92073 1.27016 0.92724 1.05661 1.01357 1.70987 1.34447 1.16787 1.35780 0.82789 0.75105 0.72306 0.75581 1.21664 1.20231 1.20894 1.21677 0.88616 0.94283 0.94976 0.90316 0.87513 0.92015 0.70553 0.92020 0.89299 0.91250 0.88841 0.89607 0.95760 0.95748 0.93075 0.93769 0.96882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.06 71.24 0.72 -0.56 16 2 C -0.17 -3.46 6.34 -19.54 -0.12 -3.59 16 3 C -0.03 -0.44 12.24 67.14 0.82 0.39 16 4 O 0.13 2.58 11.18 71.87 0.80 3.38 16 5 N -0.35 -9.61 8.69 -49.52 -0.43 -10.04 16 6 C -0.06 -1.68 6.87 42.97 0.30 -1.39 16 7 C 0.59 20.46 7.70 86.93 0.67 21.13 16 8 O -0.55 -20.28 14.68 -3.69 -0.05 -20.34 16 9 N -0.58 -21.05 2.82 -818.81 -2.31 -23.36 16 10 C 0.08 2.81 7.91 127.77 1.01 3.82 16 11 C 0.14 5.08 3.58 46.18 0.17 5.24 16 12 H 0.12 4.16 6.99 -2.39 -0.02 4.15 16 13 C -0.13 -4.69 6.54 32.06 0.21 -4.48 16 14 C 0.14 6.52 4.29 86.93 0.37 6.89 16 15 N -0.62 -31.88 2.95 -691.54 -2.04 -33.92 16 16 C -0.36 -20.81 10.01 84.03 0.84 -19.97 16 17 H 0.06 3.54 8.02 -2.91 -0.02 3.52 16 18 C -0.07 -4.08 4.96 84.86 0.42 -3.66 16 19 N -0.94 -57.28 12.96 21.65 0.28 -57.00 16 20 Si 1.12 51.73 30.03 68.60 2.06 53.80 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 C 0.13 5.71 6.29 86.73 0.55 6.25 16 25 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.37 6.80 -2.39 -0.02 1.35 16 28 H 0.28 -0.01 8.06 -2.91 -0.02 -0.03 16 29 H 0.06 2.13 8.13 -2.39 -0.02 2.11 16 30 H 0.09 3.12 5.31 -2.38 -0.01 3.10 16 31 H 0.07 3.03 4.78 -2.39 -0.01 3.02 16 32 H 0.09 3.18 8.14 -2.39 -0.02 3.17 16 33 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.02 1.20 4.42 -2.39 -0.01 1.19 16 35 H 0.02 1.27 7.51 -2.39 -0.02 1.25 16 36 H 0.26 15.80 5.78 -92.71 -0.54 15.26 16 37 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.01 0.61 8.04 -2.39 -0.02 0.59 16 Total: -1.00 -73.34 306.02 5.57 -67.77 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.32 Total: 9.64 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 5.95 Total: 10.08 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -4.50 Total: -124.32 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.75 Total: -16.96 kcal Atomic # 14 Polarization: 51.73 SS G_CDS: 2.06 Total: 53.80 kcal Total: -73.34 5.57 -67.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033562887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.046 kcal (2) G-P(sol) polarization free energy of solvation -73.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds