Wall clock time and date at job start Tue Mar 31 2020 01:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30019 * 127.33290 * 2 1 4 4 O 1.20661 * 112.29405 * 180.30002 * 3 2 1 5 5 C 1.33492 * 113.16188 * 359.71352 * 4 3 2 6 6 C 1.50701 * 126.82712 * 180.02562 * 5 4 3 7 7 C 1.37362 * 106.33946 * 0.02562 * 5 4 3 8 8 C 1.47395 * 128.56039 * 179.97438 * 7 5 4 9 9 O 1.21604 * 120.00252 * 89.99753 * 8 7 5 10 10 N 1.34779 * 119.99557 * 269.99169 * 8 7 5 11 11 C 1.46501 * 119.99869 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47220 * 179.97438 * 11 10 8 13 13 H 1.08997 * 112.73910 * 303.76211 * 12 11 10 14 14 C 1.53495 * 113.46717 * 172.94035 * 12 11 10 15 15 C 1.53495 * 83.34412 * 219.15294 * 14 12 11 16 16 N 1.47065 * 113.46526 * 74.50504 * 12 11 10 17 17 C 1.36940 * 136.06121 * 321.86622 * 16 12 11 18 18 H 1.08007 * 119.99455 * 356.14833 * 17 16 12 19 19 C 1.38802 * 120.00326 * 176.14871 * 17 16 12 20 20 N 1.31624 * 120.00287 * 6.71976 * 19 17 16 21 21 Si 1.86808 * 120.00074 * 186.71708 * 19 17 16 22 22 H 1.48499 * 109.46725 * 94.97714 * 21 19 17 23 23 H 1.48497 * 109.47220 * 214.97453 * 21 19 17 24 24 H 1.48497 * 109.47097 * 334.97575 * 21 19 17 25 25 H 1.08996 * 109.47414 * 270.14722 * 1 2 3 26 26 H 1.09008 * 109.46940 * 30.14803 * 1 2 3 27 27 H 1.09003 * 109.46966 * 150.14386 * 1 2 3 28 28 H 1.09005 * 109.46982 * 269.97495 * 6 5 4 29 29 H 1.09000 * 109.47331 * 29.97495 * 6 5 4 30 30 H 1.09000 * 109.46817 * 149.97709 * 6 5 4 31 31 H 0.96999 * 120.00074 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.47192 * 59.99983 * 11 10 8 33 33 H 1.09003 * 109.47234 * 299.99841 * 11 10 8 34 34 H 1.09001 * 114.20499 * 332.73617 * 14 12 11 35 35 H 1.09000 * 114.20790 * 105.56843 * 14 12 11 36 36 H 1.09002 * 113.47048 * 271.28766 * 15 14 12 37 37 H 1.08995 * 113.46997 * 140.84575 * 15 14 12 38 38 H 0.96989 * 120.00070 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7207 -0.0058 5 6 3.6494 -0.6008 -0.0047 6 6 4.9712 -1.3246 -0.0102 7 6 2.3991 -1.1696 0.0025 8 6 2.0401 -2.5992 0.0060 9 8 1.8975 -3.1877 1.0606 10 7 1.8697 -3.2540 -1.1596 11 6 1.5124 -4.6748 -1.1561 12 6 1.3799 -5.1709 -2.5974 13 1 0.6605 -4.5930 -3.1775 14 6 1.1761 -6.6884 -2.7052 15 6 2.1098 -6.5479 -3.9154 16 7 2.6722 -5.3485 -3.2767 17 6 3.8712 -4.6876 -3.3033 18 1 3.9898 -3.7620 -2.7595 19 6 4.9341 -5.2071 -4.0292 20 7 4.7541 -6.2608 -4.7972 21 14 6.6202 -4.4108 -3.9163 22 1 7.4336 -5.1170 -2.8942 23 1 7.2980 -4.4976 -5.2348 24 1 6.4693 -2.9848 -3.5303 25 1 -0.3634 0.0026 1.0276 26 1 -0.3633 0.8887 -0.5162 27 1 -0.3633 -0.8913 -0.5116 28 1 5.2845 -1.5011 -1.0392 29 1 5.7200 -0.7175 0.4985 30 1 4.8651 -2.2787 0.5061 31 1 1.9838 -2.7846 -2.0008 32 1 0.5632 -4.8094 -0.6373 33 1 2.2895 -5.2437 -0.6456 34 1 1.6002 -7.2563 -1.8771 35 1 0.1584 -6.9858 -2.9581 36 1 1.5844 -6.3377 -4.8470 37 1 2.8247 -7.3653 -4.0093 38 1 5.4970 -6.6240 -5.3042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038051118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:14 Heat of formation + Delta-G solvation = 55.064134 kcal Electronic energy + Delta-G solvation = -22085.211638 eV Core-core repulsion = 18739.129235 eV Total energy + Delta-G solvation = -3346.082404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -45.94233 -40.83769 -39.68881 -35.67607 -35.50523 -34.60512 -34.19298 -30.11517 -29.83646 -29.61113 -28.56952 -25.50590 -25.36473 -23.41763 -21.92434 -21.19941 -20.81645 -19.25304 -18.86606 -18.38888 -17.36184 -17.16098 -17.04117 -16.17754 -15.81852 -15.54906 -15.03536 -14.90921 -14.45412 -14.42567 -14.23364 -14.06895 -13.60323 -13.58003 -13.45025 -13.28249 -12.98931 -12.69794 -12.58891 -12.27469 -12.16964 -11.86561 -11.61511 -11.46561 -10.99160 -10.97856 -10.74886 -10.46066 -10.10974 -8.87686 -7.85241 -5.16174 0.22324 0.81116 1.28718 1.46658 1.48869 1.56250 1.73137 2.26141 2.50087 3.07074 3.20313 3.38498 3.45517 3.72137 3.88794 3.96369 4.13915 4.20441 4.36630 4.46314 4.49998 4.56754 4.59309 4.65134 4.71646 4.74247 4.89960 4.99660 5.06835 5.08741 5.11358 5.33549 5.36790 5.61189 5.76757 5.99015 6.40624 6.95409 7.04461 7.11396 7.67358 8.66876 9.32892 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015715 B = 0.006170 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.276396 B = 4537.319992 C = 5798.280751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.056 3.944 3 N -0.376 5.376 4 O 0.089 5.911 5 C 0.034 3.966 6 C -0.084 4.084 7 C -0.278 4.278 8 C 0.604 3.396 9 O -0.569 6.569 10 N -0.694 5.694 11 C 0.129 3.871 12 C 0.134 3.866 13 H 0.069 0.931 14 C -0.133 4.133 15 C 0.140 3.860 16 N -0.629 5.629 17 C -0.206 4.206 18 H 0.090 0.910 19 C -0.071 4.071 20 N -0.955 5.955 21 Si 0.962 3.038 22 H -0.292 1.292 23 H -0.303 1.303 24 H -0.255 1.255 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.408 0.592 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.021 0.979 37 H 0.035 0.965 38 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.299 9.315 7.881 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 N -0.085 5.085 4 O 0.031 5.969 5 C -0.030 4.030 6 C -0.141 4.141 7 C -0.286 4.286 8 C 0.389 3.611 9 O -0.449 6.449 10 N -0.343 5.343 11 C 0.005 3.995 12 C 0.027 3.973 13 H 0.086 0.914 14 C -0.172 4.172 15 C 0.014 3.986 16 N -0.355 5.355 17 C -0.334 4.334 18 H 0.108 0.892 19 C -0.263 4.263 20 N -0.604 5.604 21 Si 0.791 3.209 22 H -0.219 1.219 23 H -0.231 1.231 24 H -0.179 1.179 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.138 0.862 30 H 0.107 0.893 31 H 0.243 0.757 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.038 0.962 37 H 0.053 0.947 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.240 10.274 8.525 15.188 hybrid contribution 1.186 -0.469 -0.835 1.524 sum -6.054 9.805 7.691 13.854 Atomic orbital electron populations 1.20374 0.83052 1.05172 1.04832 1.25223 0.99882 0.85826 0.99677 1.73573 0.89439 1.23854 1.21659 1.84497 1.21425 1.22732 1.68268 1.25059 0.98097 0.83418 0.96426 1.20665 0.88495 0.99283 1.05668 1.21954 0.93894 0.95011 1.17720 1.16931 0.76289 0.84157 0.83700 1.90773 1.52803 1.69030 1.32302 1.45926 1.68588 1.11742 1.08058 1.21742 1.00309 0.79514 0.97941 1.22560 0.87848 0.95971 0.90891 0.91410 1.23466 1.00212 0.94788 0.98691 1.22071 0.92725 0.90139 0.93626 1.46070 1.07945 1.30313 1.51160 1.19228 0.86182 1.03762 1.24205 0.89205 1.25545 1.01345 0.99405 1.00033 1.70022 1.30783 1.26951 1.32689 0.85288 0.80488 0.78939 0.76184 1.21937 1.23086 1.17922 0.88604 0.88364 0.89188 0.87957 0.86239 0.89292 0.75673 0.89630 0.93170 0.90066 0.88226 0.96162 0.94667 0.94701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.49 71.23 0.75 -0.71 16 2 C 0.06 1.49 7.59 45.15 0.34 1.83 16 3 N -0.38 -10.57 12.01 -44.79 -0.54 -11.10 16 4 O 0.09 2.41 11.06 76.99 0.85 3.27 16 5 C 0.03 0.89 7.55 25.48 0.19 1.08 16 6 C -0.08 -1.81 10.33 71.24 0.74 -1.08 16 7 C -0.28 -8.14 6.24 -18.75 -0.12 -8.25 16 8 C 0.60 19.68 7.60 86.65 0.66 20.34 16 9 O -0.57 -22.10 17.11 -4.04 -0.07 -22.17 16 10 N -0.69 -21.58 5.36 -466.39 -2.50 -24.08 16 11 C 0.13 4.13 5.52 86.38 0.48 4.61 16 12 C 0.13 4.55 4.10 41.79 0.17 4.72 16 13 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 14 C -0.13 -4.28 8.03 30.93 0.25 -4.03 16 15 C 0.14 6.15 7.42 83.18 0.62 6.77 16 16 N -0.63 -28.84 3.65 -713.92 -2.61 -31.44 16 17 C -0.21 -10.40 10.54 84.03 0.89 -9.52 16 18 H 0.09 4.22 7.49 -2.91 -0.02 4.20 16 19 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 20 N -0.95 -56.03 11.53 21.65 0.25 -55.78 16 21 Si 0.96 43.26 29.56 68.60 2.03 45.29 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 29 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.09 2.10 8.11 -2.39 -0.02 2.08 16 31 H 0.41 12.37 8.30 -92.71 -0.77 11.60 16 32 H 0.09 2.38 8.14 -2.38 -0.02 2.37 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 35 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.03 1.79 7.11 -2.39 -0.02 1.77 16 38 H 0.24 14.13 8.31 -92.72 -0.77 13.35 16 Total: -1.00 -68.28 331.37 3.15 -65.13 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.31 Total: 18.46 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.43 Total: 12.42 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -5.40 Total: -122.41 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.78 Total: -18.90 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -68.28 3.15 -65.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038051118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.196 kcal (2) G-P(sol) polarization free energy of solvation -68.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds