Wall clock time and date at job start Tue Mar 31 2020 02:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30618 * 125.42056 * 2 1 4 4 C 1.33700 * 108.99495 * 179.83534 * 3 2 1 5 5 C 1.50693 * 126.27556 * 180.13456 * 4 3 2 6 6 C 1.36346 * 107.44633 * 0.42620 * 4 3 2 7 7 C 1.46721 * 126.63912 * 179.74807 * 6 4 3 8 8 O 1.21690 * 120.00265 * 359.97117 * 7 6 4 9 9 N 1.34778 * 120.00243 * 179.97438 * 7 6 4 10 10 C 1.46501 * 120.00244 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46793 * 180.02562 * 10 9 7 12 12 H 1.09004 * 112.96904 * 306.67878 * 11 10 9 13 13 C 1.53949 * 113.76437 * 175.00453 * 11 10 9 14 14 C 1.53948 * 86.28802 * 222.08995 * 13 11 10 15 15 N 1.47575 * 113.77141 * 78.51099 * 11 10 9 16 16 C 1.36939 * 134.49262 * 318.93979 * 15 11 10 17 17 H 1.08002 * 119.99785 * 7.05297 * 16 15 11 18 18 C 1.38807 * 120.00511 * 187.05579 * 16 15 11 19 19 N 1.31619 * 119.99612 * 7.60499 * 18 16 15 20 20 Si 1.86803 * 120.00367 * 187.61015 * 18 16 15 21 21 H 1.48498 * 109.47248 * 94.81029 * 20 18 16 22 22 H 1.48501 * 109.46964 * 214.81249 * 20 18 16 23 23 H 1.48501 * 109.46924 * 334.80868 * 20 18 16 24 24 O 1.33661 * 125.42414 * 180.31048 * 2 1 3 25 25 H 1.09005 * 109.46684 * 269.69278 * 1 2 3 26 26 H 1.08999 * 109.47117 * 29.69130 * 1 2 3 27 27 H 1.09002 * 109.47427 * 149.69350 * 1 2 3 28 28 H 1.08999 * 109.46881 * 270.34536 * 5 4 3 29 29 H 1.09003 * 109.47364 * 30.34306 * 5 4 3 30 30 H 1.09001 * 109.47442 * 150.34627 * 5 4 3 31 31 H 0.97005 * 119.99615 * 359.97438 * 9 7 6 32 32 H 1.08995 * 109.47275 * 300.00257 * 10 9 7 33 33 H 1.08999 * 109.46765 * 60.00328 * 10 9 7 34 34 H 1.08995 * 113.74121 * 336.43507 * 13 11 10 35 35 H 1.08997 * 113.74388 * 107.64068 * 13 11 10 36 36 H 1.08997 * 113.77245 * 137.90586 * 14 13 11 37 37 H 1.08996 * 113.77359 * 269.19473 * 14 13 11 38 38 H 0.97002 * 119.99865 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5464 0.6864 0.0036 5 6 4.7452 1.5995 0.0078 6 6 3.5708 -0.6768 -0.0037 7 6 4.7635 -1.5313 -0.0083 8 8 5.8719 -1.0290 -0.0060 9 7 4.6316 -2.8726 -0.0150 10 6 5.8226 -3.7257 -0.0201 11 6 5.3970 -5.1953 -0.0279 12 1 4.7032 -5.4416 0.7759 13 6 6.5726 -6.1809 -0.1564 14 6 5.6802 -6.9617 -1.1382 15 7 4.9727 -5.6847 -1.3539 16 6 4.2233 -5.1633 -2.3746 17 1 3.8979 -4.1342 -2.3344 18 6 3.8819 -5.9572 -3.4608 19 7 4.1474 -7.2462 -3.4430 20 14 3.0459 -5.1962 -4.9480 21 1 4.0685 -4.8509 -5.9679 22 1 2.0805 -6.1667 -5.5236 23 1 2.3241 -3.9661 -4.5344 24 8 2.2817 -1.0892 -0.0059 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 0.8927 -0.5090 27 1 -0.3634 -0.8872 -0.5186 28 1 5.0335 1.8252 -1.0189 29 1 4.4952 2.5249 0.5267 30 1 5.5739 1.1090 0.5184 31 1 3.7481 -3.2730 -0.0164 32 1 6.4166 -3.5151 -0.9093 33 1 6.4177 -3.5241 0.8706 34 1 7.4597 -5.7481 -0.6188 35 1 6.7941 -6.7222 0.7634 36 1 6.2093 -7.3251 -2.0192 37 1 5.0699 -7.7292 -0.6621 38 1 3.9085 -7.8011 -4.2019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038144154.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:46 Heat of formation + Delta-G solvation = 34.765429 kcal Electronic energy + Delta-G solvation = -21794.425427 eV Core-core repulsion = 18447.462805 eV Total energy + Delta-G solvation = -3346.962621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.44765 -39.38240 -37.94857 -35.46372 -34.11516 -32.84450 -32.22619 -29.44523 -28.73523 -27.91381 -26.59957 -23.41046 -22.78267 -21.93935 -21.45771 -20.44313 -19.24941 -18.08129 -17.07139 -16.60622 -15.93437 -15.68177 -15.33387 -14.57993 -14.37349 -14.28119 -13.83427 -13.47076 -13.35822 -13.20518 -13.06287 -12.95157 -12.81173 -12.19145 -11.94943 -11.45102 -11.19625 -11.11244 -11.02254 -10.88998 -10.79385 -10.56674 -10.20414 -9.90343 -9.77182 -9.46358 -8.97705 -8.80016 -8.59220 -6.94373 -5.82710 -3.13738 0.83800 2.34755 2.40286 3.21847 3.34811 3.38285 3.41563 3.42169 3.82503 4.39491 4.67150 4.75570 5.06345 5.09358 5.11141 5.26778 5.34813 5.51805 5.54907 5.56281 5.64272 5.66760 5.83863 5.85753 5.92036 5.99777 6.23071 6.27828 6.34705 6.55212 6.60757 6.75969 7.17846 7.35695 7.46262 7.51442 7.73040 7.93154 8.25452 8.99820 9.66441 10.55145 11.35133 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015218 B = 0.005525 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.459197 B = 5066.694870 C = 6152.691321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.215 3.785 3 N -0.492 5.492 4 C 0.074 3.926 5 C -0.078 4.078 6 C -0.110 4.110 7 C 0.604 3.396 8 O -0.525 6.525 9 N -0.699 5.699 10 C 0.122 3.878 11 C 0.123 3.877 12 H 0.050 0.950 13 C -0.155 4.155 14 C 0.166 3.834 15 N -0.601 5.601 16 C -0.223 4.223 17 H 0.078 0.922 18 C -0.004 4.004 19 N -0.917 5.917 20 Si 0.906 3.094 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.282 1.282 24 O -0.185 6.185 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.408 0.592 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.032 0.968 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 11.206 9.436 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.009 3.991 3 N -0.223 5.223 4 C -0.050 4.050 5 C -0.135 4.135 6 C -0.165 4.165 7 C 0.389 3.611 8 O -0.404 6.404 9 N -0.348 5.348 10 C -0.002 4.002 11 C 0.016 3.984 12 H 0.067 0.933 13 C -0.194 4.194 14 C 0.040 3.960 15 N -0.327 5.327 16 C -0.350 4.350 17 H 0.096 0.904 18 C -0.201 4.201 19 N -0.564 5.564 20 Si 0.736 3.264 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.207 1.207 24 O -0.071 6.071 25 H 0.115 0.885 26 H 0.122 0.878 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.243 0.757 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.799 12.032 9.114 15.351 hybrid contribution -0.962 -0.637 -0.937 1.486 sum -3.761 11.395 8.177 14.520 Atomic orbital electron populations 1.20371 0.80880 1.05635 1.04971 1.26514 0.96684 0.78704 0.97157 1.70318 1.01657 1.29992 1.20346 1.22024 0.93398 0.91296 0.98299 1.20360 0.92268 0.97214 1.03678 1.23050 0.82453 0.95239 1.15807 1.16325 0.85264 0.81930 0.77615 1.90821 1.23620 1.74013 1.51947 1.45919 1.11731 1.04898 1.72218 1.21892 0.86514 0.89946 1.01821 1.22509 0.94692 0.90857 0.90376 0.93272 1.23767 0.97454 0.98486 0.99700 1.22063 0.90021 0.88983 0.94888 1.46185 1.60417 1.14755 1.11363 1.18953 1.26004 0.94524 0.95551 0.90448 1.24779 1.01013 0.95352 0.98997 1.69842 1.52255 1.03540 1.30738 0.86201 0.78928 0.77969 0.83257 1.21537 1.21664 1.20711 1.84479 1.16250 1.37181 1.69202 0.88507 0.87844 0.88751 0.90094 0.90720 0.88611 0.75680 0.90499 0.91604 0.90439 0.92592 0.92086 0.94981 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 36.01 0.38 -0.10 16 2 C 0.21 2.84 8.32 -12.79 -0.11 2.74 16 3 N -0.49 -7.31 11.26 -7.07 -0.08 -7.39 16 4 C 0.07 1.15 7.16 -82.46 -0.59 0.56 16 5 C -0.08 -1.01 9.87 36.00 0.36 -0.65 16 6 C -0.11 -1.83 7.18 -36.84 -0.26 -2.10 16 7 C 0.60 10.73 7.79 -12.83 -0.10 10.63 16 8 O -0.52 -10.02 14.79 5.20 0.08 -9.95 16 9 N -0.70 -12.25 5.51 -61.61 -0.34 -12.59 16 10 C 0.12 2.16 5.54 -4.04 -0.02 2.14 16 11 C 0.12 2.33 4.33 -66.87 -0.29 2.04 16 12 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 13 C -0.16 -2.74 7.86 -25.80 -0.20 -2.94 16 14 C 0.17 3.74 7.31 -2.97 -0.02 3.72 16 15 N -0.60 -14.53 3.56 -170.76 -0.61 -15.13 16 16 C -0.22 -6.00 10.49 -15.06 -0.16 -6.16 16 17 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 18 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 19 N -0.92 -26.83 11.76 55.49 0.65 -26.18 16 20 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 O -0.18 -2.86 10.57 4.45 0.05 -2.81 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 1.29 6.47 -51.93 -0.34 0.96 16 31 H 0.41 7.11 8.27 -40.82 -0.34 6.78 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.51 7.69 -51.93 -0.40 1.11 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -32.60 328.24 -6.71 -39.31 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.27 Total: 2.99 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -1.12 Total: 9.66 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -0.37 Total: -61.29 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.12 Total: -12.76 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.60 -6.71 -39.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038144154.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.073 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds