Wall clock time and date at job start Tue Mar 31 2020 02:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30128 * 126.70518 * 2 1 4 4 O 1.20887 * 111.97917 * 179.75836 * 3 2 1 5 5 C 1.34644 * 111.46966 * 0.45532 * 4 3 2 6 6 C 1.47513 * 126.94735 * 179.82554 * 5 4 3 7 7 O 1.21579 * 120.00314 * 179.68278 * 6 5 4 8 8 N 1.34780 * 119.99911 * 359.68940 * 6 5 4 9 9 C 1.46500 * 119.99871 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46786 * 179.97438 * 9 8 6 11 11 H 1.08997 * 112.78530 * 303.72872 * 10 9 8 12 12 C 1.53499 * 113.46472 * 172.93553 * 10 9 8 13 13 C 1.53749 * 83.25991 * 218.98716 * 12 10 9 14 14 N 1.47072 * 113.46180 * 74.50654 * 10 9 8 15 15 C 1.36931 * 136.06174 * 321.86155 * 14 10 9 16 16 H 1.08002 * 120.00098 * 359.97438 * 15 14 10 17 17 C 1.38812 * 120.00429 * 180.02562 * 15 14 10 18 18 N 1.31624 * 119.99535 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00484 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00576 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00326 * 19 17 15 22 22 H 1.48498 * 109.47210 * 150.00037 * 19 17 15 23 23 C 1.36832 * 106.11198 * 359.56578 * 5 4 3 24 24 C 1.50690 * 128.07757 * 180.24186 * 23 5 4 25 25 H 1.09007 * 109.46995 * 269.95887 * 1 2 3 26 26 H 1.09005 * 109.46725 * 29.95194 * 1 2 3 27 27 H 1.08991 * 109.47681 * 149.95645 * 1 2 3 28 28 H 0.97001 * 119.99969 * 359.97438 * 8 6 5 29 29 H 1.09001 * 109.46704 * 59.99925 * 9 8 6 30 30 H 1.08998 * 109.46915 * 299.99782 * 9 8 6 31 31 H 1.09000 * 114.20984 * 332.74702 * 12 10 9 32 32 H 1.09004 * 114.19718 * 105.37227 * 12 10 9 33 33 H 1.09004 * 113.47201 * 271.50865 * 13 12 10 34 34 H 1.09001 * 113.55046 * 140.98942 * 13 12 10 35 35 H 0.97005 * 119.99717 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.47290 * 89.99884 * 24 23 5 37 37 H 1.08999 * 109.47466 * 209.99877 * 24 23 5 38 38 H 1.09004 * 109.47525 * 329.99797 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2848 1.0433 0.0000 4 8 3.4539 0.7360 0.0047 5 6 3.6121 -0.6011 -0.0013 6 6 4.8869 -1.3432 -0.0019 7 8 4.8827 -2.5590 -0.0019 8 7 6.0565 -0.6734 -0.0022 9 6 7.3227 -1.4104 -0.0022 10 6 8.4891 -0.4202 -0.0032 11 1 8.4494 0.2778 -0.8394 12 6 9.8594 -1.0898 0.1699 13 6 10.1486 0.1417 1.0439 14 7 8.7027 0.2343 1.2964 15 6 7.9059 0.7213 2.2980 16 1 6.8312 0.6589 2.2116 17 6 8.4795 1.2960 3.4238 18 7 9.7893 1.3734 3.5284 19 14 7.3926 1.9609 4.7898 20 1 7.0817 3.3884 4.5246 21 1 6.1301 1.1807 4.8418 22 1 8.1019 1.8418 6.0890 23 6 2.3512 -1.1326 -0.0009 24 6 1.9556 -2.5867 -0.0013 25 1 -0.3633 -0.0007 1.0277 26 1 -0.3633 0.8905 -0.5131 27 1 -0.3634 -0.8895 -0.5144 28 1 6.0599 0.2966 -0.0024 29 1 7.3780 -2.0375 -0.8920 30 1 7.3783 -2.0370 0.8880 31 1 9.8304 -2.0327 0.7160 32 1 10.4511 -1.1393 -0.7442 33 1 10.5465 0.9879 0.4837 34 1 10.7315 -0.0850 1.9366 35 1 10.1901 1.7753 4.3150 36 1 1.8607 -2.9377 1.0263 37 1 1.0012 -2.7035 -0.5147 38 1 2.7187 -3.1708 -0.5158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038390154.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:46 Heat of formation + Delta-G solvation = 55.959260 kcal Electronic energy + Delta-G solvation = -21813.539816 eV Core-core repulsion = 18467.496228 eV Total energy + Delta-G solvation = -3346.043588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.07656 -40.90686 -39.72626 -36.62484 -35.56841 -34.26369 -33.72450 -30.29911 -29.88940 -29.49690 -28.67678 -25.38646 -24.88371 -23.21048 -22.78450 -21.44066 -20.86136 -19.36857 -18.92190 -18.42489 -17.33419 -17.10705 -16.91456 -16.22322 -15.83462 -15.61123 -14.94228 -14.77728 -14.61311 -14.48454 -14.05983 -13.91406 -13.80689 -13.61363 -13.34223 -13.17910 -12.99142 -12.70411 -12.59629 -12.35175 -12.17090 -11.88084 -11.63941 -11.48914 -11.01275 -10.99024 -10.83734 -10.61004 -10.09898 -8.88771 -7.88595 -5.19491 -0.33522 0.95896 1.41844 1.42363 1.49722 1.52774 1.86153 2.17174 2.45512 3.03667 3.32033 3.36614 3.47562 3.67823 3.86246 3.94169 4.09224 4.21746 4.36318 4.58166 4.62880 4.63869 4.70716 4.73014 4.77037 4.87442 4.89993 5.06563 5.08964 5.10436 5.24013 5.33421 5.34601 5.60032 5.75812 5.97949 6.24942 6.83826 6.94235 7.00252 7.63808 8.63396 9.28836 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.005311 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.251292 B = 5271.046288 C = 6411.676498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.015 3.985 3 N -0.369 5.369 4 O 0.097 5.903 5 C -0.107 4.107 6 C 0.603 3.397 7 O -0.540 6.540 8 N -0.697 5.697 9 C 0.129 3.871 10 C 0.130 3.870 11 H 0.069 0.931 12 C -0.130 4.130 13 C 0.141 3.859 14 N -0.630 5.630 15 C -0.206 4.206 16 H 0.083 0.917 17 C -0.067 4.067 18 N -0.951 5.951 19 Si 0.962 3.038 20 H -0.288 1.288 21 H -0.276 1.276 22 H -0.295 1.295 23 C -0.119 4.119 24 C -0.081 4.081 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.410 0.590 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.021 0.979 34 H 0.037 0.963 35 H 0.246 0.754 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.954 -6.843 -10.872 19.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.143 4.143 3 N -0.075 5.075 4 O 0.028 5.972 5 C -0.172 4.172 6 C 0.387 3.613 7 O -0.419 6.419 8 N -0.346 5.346 9 C 0.005 3.995 10 C 0.024 3.976 11 H 0.087 0.913 12 C -0.168 4.168 13 C 0.015 3.985 14 N -0.356 5.356 15 C -0.334 4.334 16 H 0.101 0.899 17 C -0.260 4.260 18 N -0.601 5.601 19 Si 0.792 3.208 20 H -0.215 1.215 21 H -0.201 1.201 22 H -0.222 1.222 23 C -0.124 4.124 24 C -0.138 4.138 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.245 0.755 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.214 -6.256 -10.561 19.548 hybrid contribution 0.012 0.741 1.179 1.392 sum -15.202 -5.516 -9.382 18.696 Atomic orbital electron populations 1.20430 0.82148 1.05590 1.04974 1.24222 1.01019 0.87158 1.01942 1.73729 0.89503 1.25535 1.18697 1.84959 1.21742 1.22205 1.68271 1.24078 0.97463 0.84094 1.11595 1.16607 0.81450 0.86025 0.77241 1.90783 1.86429 1.12443 1.52257 1.45930 1.05503 1.11330 1.71847 1.21815 0.80995 0.94701 1.01996 1.22616 0.93511 0.92650 0.88864 0.91338 1.23508 0.95402 0.97574 1.00365 1.22122 0.86641 0.93809 0.95899 1.46045 1.03591 1.69844 1.16122 1.19152 0.89440 1.30072 0.94779 0.89930 1.25443 0.96852 1.02968 1.00701 1.69994 1.09501 1.51088 1.29470 0.85314 0.78009 0.78267 0.79237 1.21512 1.20126 1.22169 1.21921 0.89570 0.99992 1.00937 1.20409 1.03558 0.85780 1.04044 0.88588 0.89687 0.87088 0.75456 0.88868 0.92818 0.89867 0.88060 0.96072 0.94473 0.94538 0.89584 0.87514 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.39 71.24 0.74 -0.26 16 2 C 0.02 0.36 7.31 43.55 0.32 0.68 16 3 N -0.37 -11.08 12.04 -48.87 -0.59 -11.67 16 4 O 0.10 3.09 11.04 65.81 0.73 3.82 16 5 C -0.11 -3.28 7.29 24.39 0.18 -3.11 16 6 C 0.60 20.05 7.82 86.69 0.68 20.73 16 7 O -0.54 -19.45 15.11 -3.97 -0.06 -19.51 16 8 N -0.70 -23.11 5.33 -466.30 -2.49 -25.59 16 9 C 0.13 4.23 5.52 86.38 0.48 4.71 16 10 C 0.13 4.60 4.10 41.79 0.17 4.77 16 11 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 12 C -0.13 -4.25 8.04 31.01 0.25 -4.00 16 13 C 0.14 6.34 7.41 83.26 0.62 6.95 16 14 N -0.63 -30.17 3.65 -713.34 -2.60 -32.77 16 15 C -0.21 -11.10 10.55 84.03 0.89 -10.21 16 16 H 0.08 4.29 7.50 -2.91 -0.02 4.27 16 17 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 18 N -0.95 -57.31 11.50 21.65 0.25 -57.06 16 19 Si 0.96 46.67 29.55 68.60 2.03 48.70 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 23 C -0.12 -3.02 6.36 -19.45 -0.12 -3.15 16 24 C -0.08 -1.54 9.86 71.23 0.70 -0.84 16 25 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.11 0.87 7.65 -2.39 -0.02 0.86 16 28 H 0.41 13.65 8.20 -92.71 -0.76 12.89 16 29 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 32 H 0.10 2.53 8.14 -2.38 -0.02 2.52 16 33 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.04 1.92 7.11 -2.39 -0.02 1.91 16 35 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.11 1.24 7.65 -2.39 -0.02 1.22 16 38 H 0.08 1.71 6.73 -2.38 -0.02 1.70 16 Total: -1.00 -69.91 326.12 2.95 -66.96 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.32 Total: 14.15 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 5.36 Total: 12.96 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -5.43 Total: -127.08 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.67 Total: -15.69 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -69.91 2.95 -66.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038390154.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.920 kcal (2) G-P(sol) polarization free energy of solvation -69.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds