Wall clock time and date at job start Tue Mar 31 2020 02:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33687 * 126.27835 * 2 1 4 4 C 1.30615 * 108.99890 * 180.27581 * 3 2 1 5 5 O 1.33665 * 109.15325 * 359.72921 * 4 3 2 6 6 C 1.35347 * 107.68318 * 0.02562 * 5 4 3 7 7 C 1.46717 * 126.64126 * 179.97438 * 6 5 4 8 8 O 1.21688 * 119.99817 * 180.02562 * 7 6 5 9 9 N 1.34782 * 120.00178 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99822 * 179.97438 * 9 7 6 11 11 C 1.52993 * 110.89183 * 297.57543 * 10 9 7 12 12 C 1.55157 * 111.03555 * 173.66724 * 10 9 7 13 13 C 1.54334 * 103.02095 * 277.21854 * 12 10 9 14 14 N 1.47014 * 107.26782 * 338.14225 * 13 12 10 15 15 C 1.36945 * 125.64902 * 178.84833 * 14 13 12 16 16 H 1.07997 * 119.99756 * 179.68982 * 15 14 13 17 17 C 1.38805 * 119.99878 * 359.68887 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47428 * 108.70537 * 358.58102 * 14 13 12 24 24 H 1.09002 * 109.46883 * 270.18767 * 1 2 3 25 25 H 1.09002 * 109.47176 * 30.18545 * 1 2 3 26 26 H 1.08997 * 109.47590 * 150.18671 * 1 2 3 27 27 H 1.07996 * 125.42557 * 179.75863 * 4 3 2 28 28 H 0.96991 * 119.99925 * 0.02562 * 9 7 6 29 29 H 1.09002 * 109.47666 * 182.43089 * 11 10 9 30 30 H 1.09008 * 109.47143 * 302.42655 * 11 10 9 31 31 H 1.08999 * 109.47170 * 62.42125 * 11 10 9 32 32 H 1.08998 * 110.71770 * 35.78022 * 12 10 9 33 33 H 1.09002 * 110.71853 * 158.87455 * 12 10 9 34 34 H 1.08998 * 109.99457 * 218.65928 * 13 12 10 35 35 H 1.09007 * 109.77698 * 97.49747 * 13 12 10 36 36 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 37 37 H 1.09003 * 110.36579 * 143.19056 * 23 14 13 38 38 H 1.08993 * 110.36917 * 265.41008 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0777 0.0000 4 6 3.5452 0.6898 -0.0059 5 8 3.5889 -0.6462 -0.0040 6 6 2.3136 -1.0993 0.0030 7 6 1.8826 -2.5017 0.0068 8 8 0.6965 -2.7736 0.0126 9 7 2.8003 -3.4888 0.0040 10 6 2.3699 -4.8891 0.0084 11 6 1.5833 -5.2141 1.2798 12 6 3.5812 -5.8446 -0.1556 13 6 3.8044 -5.8641 -1.6826 14 7 2.5408 -5.4561 -2.3136 15 6 2.3271 -5.3239 -3.6598 16 1 1.3568 -5.0219 -4.0254 17 6 3.3575 -5.5781 -4.5543 18 7 4.5400 -5.9466 -4.1088 19 14 3.0658 -5.3984 -6.3907 20 1 4.3151 -5.7240 -7.1245 21 1 1.9866 -6.3266 -6.8135 22 1 2.6641 -4.0013 -6.6937 23 6 1.5399 -5.2189 -1.2574 24 1 -0.3633 0.0034 1.0277 25 1 -0.3634 0.8883 -0.5167 26 1 -0.3634 -0.8916 -0.5109 27 1 4.4043 1.3441 -0.0111 28 1 3.7457 -3.2720 -0.0002 29 1 1.3121 -6.2698 1.2795 30 1 2.1986 -4.9974 2.1531 31 1 0.6789 -4.6065 1.3128 32 1 4.4567 -5.4493 0.3594 33 1 3.3379 -6.8421 0.2104 34 1 4.0732 -6.8694 -2.0072 35 1 4.5951 -5.1626 -1.9488 36 1 5.2600 -6.1246 -4.7340 37 1 0.9012 -4.3763 -1.5224 38 1 0.9389 -6.1138 -1.0965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046215481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:19 Heat of formation + Delta-G solvation = -9.418380 kcal Electronic energy + Delta-G solvation = -22539.545027 eV Core-core repulsion = 19190.666452 eV Total energy + Delta-G solvation = -3348.878575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.46232 -41.20919 -38.90627 -36.47434 -35.65371 -33.77048 -32.67663 -31.66981 -30.37659 -28.78579 -27.52915 -25.59738 -24.85337 -23.12903 -22.27225 -21.69055 -20.55881 -19.45414 -18.71752 -17.93458 -17.42318 -17.17752 -16.68727 -15.99677 -15.75433 -15.61008 -15.50627 -14.95179 -14.28154 -14.20318 -14.03275 -13.89103 -13.56568 -13.42857 -13.25459 -13.06887 -12.83342 -12.76818 -12.19986 -12.13982 -12.07949 -12.07532 -11.90253 -11.71980 -11.57540 -10.92907 -10.72042 -10.24088 -9.89431 -8.87850 -7.87309 -5.20950 -0.21427 1.39804 1.42012 1.44494 1.45679 1.51008 2.00665 2.20142 2.46795 3.14063 3.30875 3.50325 3.67567 3.67910 3.81545 4.02231 4.16284 4.41842 4.44223 4.62037 4.67193 4.68805 4.73008 4.83275 4.87291 4.92576 5.01161 5.03978 5.06761 5.30405 5.35531 5.41264 5.56529 5.65233 5.75094 6.18695 6.32648 6.57011 7.02633 7.10323 7.76280 8.40089 9.22433 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.005926 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.952059 B = 4723.478723 C = 5473.826819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.070 3.930 3 N -0.523 5.523 4 C 0.224 3.776 5 O -0.196 6.196 6 C -0.136 4.136 7 C 0.607 3.393 8 O -0.536 6.536 9 N -0.688 5.688 10 C 0.165 3.835 11 C -0.140 4.140 12 C -0.128 4.128 13 C 0.184 3.816 14 N -0.621 5.621 15 C -0.242 4.242 16 H 0.070 0.930 17 C -0.060 4.060 18 N -0.946 5.946 19 Si 0.973 3.027 20 H -0.289 1.289 21 H -0.278 1.278 22 H -0.283 1.283 23 C 0.127 3.873 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.309 0.691 28 H 0.408 0.592 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.010 0.990 35 H 0.015 0.985 36 H 0.248 0.752 37 H 0.035 0.965 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 9.670 13.422 16.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 N -0.252 5.252 4 C -0.001 4.001 5 O -0.082 6.082 6 C -0.191 4.191 7 C 0.393 3.607 8 O -0.416 6.416 9 N -0.337 5.337 10 C 0.079 3.921 11 C -0.198 4.198 12 C -0.166 4.166 13 C 0.059 3.941 14 N -0.347 5.347 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.253 4.253 18 N -0.595 5.595 19 Si 0.801 3.199 20 H -0.215 1.215 21 H -0.204 1.204 22 H -0.209 1.209 23 C 0.001 3.999 24 H 0.112 0.888 25 H 0.106 0.894 26 H 0.098 0.902 27 H 0.324 0.676 28 H 0.244 0.756 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.028 0.972 35 H 0.033 0.967 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.502 9.993 13.237 16.653 hybrid contribution 0.837 -0.500 -1.501 1.790 sum -0.665 9.493 11.736 15.109 Atomic orbital electron populations 1.20382 0.84666 1.04131 1.04276 1.22346 0.99193 0.86579 0.97210 1.70362 1.02429 1.31271 1.21120 1.29591 0.98337 0.78966 0.93175 1.84509 1.28885 1.25576 1.69264 1.22847 0.82264 0.96078 1.17939 1.16437 0.85742 0.81838 0.76661 1.90783 1.16508 1.82240 1.52020 1.45717 1.09705 1.05478 1.72800 1.21491 0.95698 0.79587 0.95371 1.21931 1.00275 1.02798 0.94784 1.23114 0.97268 0.99723 0.96520 1.20946 0.87542 0.96845 0.88721 1.44681 1.08872 1.79935 1.01256 1.19300 0.96613 1.39052 0.82187 0.91242 1.25527 0.95734 1.02055 1.02009 1.70140 1.02284 1.53536 1.33562 0.85241 0.76673 0.77843 0.80123 1.21471 1.20406 1.20903 1.22033 0.91997 0.97595 0.88316 0.88784 0.89389 0.90239 0.67614 0.75649 0.90055 0.90533 0.92126 0.88622 0.88475 0.97189 0.96725 0.94304 0.94701 0.95066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 9.87 71.23 0.70 -1.26 16 2 C 0.07 2.03 7.16 41.83 0.30 2.33 16 3 N -0.52 -13.33 11.26 -303.14 -3.41 -16.74 16 4 C 0.22 4.25 13.21 130.42 1.72 5.97 16 5 O -0.20 -5.01 10.57 -7.14 -0.08 -5.09 16 6 C -0.14 -4.20 7.18 24.04 0.17 -4.03 16 7 C 0.61 20.95 7.18 86.46 0.62 21.57 16 8 O -0.54 -20.26 11.59 -4.31 -0.05 -20.31 16 9 N -0.69 -22.62 5.17 -420.51 -2.18 -24.80 16 10 C 0.17 5.56 0.82 5.00 0.00 5.56 16 11 C -0.14 -3.75 8.58 71.98 0.62 -3.14 16 12 C -0.13 -4.25 5.99 31.79 0.19 -4.06 16 13 C 0.18 8.80 5.37 86.73 0.47 9.27 16 14 N -0.62 -32.47 3.39 -691.96 -2.35 -34.82 16 15 C -0.24 -14.10 10.28 84.03 0.86 -13.24 16 16 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 17 C -0.06 -3.47 5.49 84.86 0.47 -3.01 16 18 N -0.95 -56.66 10.31 21.65 0.22 -56.44 16 19 Si 0.97 46.85 29.55 68.60 2.03 48.88 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 23 C 0.13 5.53 6.10 86.86 0.53 6.06 16 24 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.08 2.32 6.47 -2.39 -0.02 2.30 16 27 H 0.31 1.65 8.06 -2.91 -0.02 1.63 16 28 H 0.41 12.31 8.29 -92.71 -0.77 11.54 16 29 H 0.08 1.95 8.11 -2.39 -0.02 1.93 16 30 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.06 1.81 6.53 -2.39 -0.02 1.79 16 32 H 0.10 2.62 8.05 -2.39 -0.02 2.60 16 33 H 0.10 2.85 8.01 -2.39 -0.02 2.83 16 34 H 0.01 0.53 7.52 -2.39 -0.02 0.52 16 35 H 0.01 0.77 7.37 -2.38 -0.02 0.76 16 36 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.03 1.66 6.31 -2.39 -0.02 1.65 16 38 H 0.03 1.34 8.04 -2.39 -0.02 1.32 16 Total: -1.00 -74.25 313.72 1.16 -73.08 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.32 Total: 14.21 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: 6.66 Total: 22.02 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -7.71 Total: -132.80 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.13 Total: -25.40 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -74.25 1.16 -73.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046215481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.666 kcal (2) G-P(sol) polarization free energy of solvation -74.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds