Wall clock time and date at job start Tue Mar 31 2020 02:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29932 * 125.37460 * 2 1 4 4 C 1.36069 * 108.47863 * 180.02562 * 3 2 1 5 5 C 1.47413 * 126.45007 * 179.97438 * 4 3 2 6 6 O 1.21614 * 119.99926 * 180.02562 * 5 4 3 7 7 N 1.34779 * 120.00035 * 0.02783 * 5 4 3 8 8 C 1.46504 * 120.00103 * 180.02562 * 7 5 4 9 9 C 1.53003 * 110.91887 * 62.44201 * 8 7 5 10 10 C 1.55441 * 111.01669 * 186.50096 * 8 7 5 11 11 C 1.54323 * 102.97188 * 82.51978 * 10 8 7 12 12 N 1.47022 * 107.26753 * 22.19263 * 11 10 8 13 13 C 1.36940 * 125.64951 * 181.03524 * 12 11 10 14 14 H 1.07993 * 120.00626 * 173.96059 * 13 12 11 15 15 C 1.38813 * 119.99685 * 353.96137 * 13 12 11 16 16 N 1.31622 * 120.00459 * 6.83562 * 15 13 12 17 17 Si 1.86803 * 120.00134 * 186.84485 * 15 13 12 18 18 H 1.48493 * 109.47511 * 94.97953 * 17 15 13 19 19 H 1.48499 * 109.47218 * 214.98678 * 17 15 13 20 20 H 1.48501 * 109.46706 * 334.97961 * 17 15 13 21 21 C 1.47424 * 108.70453 * 1.06423 * 12 11 10 22 22 C 1.36091 * 107.09930 * 0.25913 * 4 3 2 23 23 O 1.34048 * 125.38180 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.46990 * 90.00134 * 1 2 3 25 25 H 1.09002 * 109.46487 * 209.99897 * 1 2 3 26 26 H 1.08998 * 109.47475 * 329.99593 * 1 2 3 27 27 H 0.96997 * 119.99790 * 359.97438 * 7 5 4 28 28 H 1.09003 * 109.47087 * 297.55497 * 9 8 7 29 29 H 1.09003 * 109.46870 * 57.55268 * 9 8 7 30 30 H 1.08998 * 109.47123 * 177.55827 * 9 8 7 31 31 H 1.09002 * 110.70736 * 324.14874 * 10 8 7 32 32 H 1.08995 * 110.86058 * 200.96563 * 10 8 7 33 33 H 1.09004 * 109.88274 * 262.77884 * 11 10 8 34 34 H 1.08993 * 110.01225 * 141.68434 * 11 10 8 35 35 H 0.96996 * 120.00616 * 180.02562 * 16 15 13 36 36 H 1.08998 * 110.36838 * 94.71045 * 21 12 11 37 37 H 1.09001 * 110.36387 * 216.92232 * 21 12 11 38 38 H 1.08000 * 126.52647 * 179.73720 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6640 -0.0006 5 6 4.7438 1.5440 -0.0013 6 8 5.8604 1.0621 -0.0023 7 7 4.5877 2.8827 -0.0009 8 6 5.7630 3.7573 -0.0022 9 6 6.5944 3.5532 -1.2703 10 6 5.3498 5.2467 0.1629 11 6 5.1720 5.3898 1.6891 12 7 5.9522 4.3163 2.3219 13 6 6.0420 4.0820 3.6681 14 1 6.5630 3.2083 4.0307 15 6 5.4632 4.9676 4.5668 16 7 4.7151 5.9570 4.1266 17 14 5.7463 4.7553 6.4010 18 1 6.8795 5.6139 6.8297 19 1 4.5198 5.1489 7.1400 20 1 6.0644 3.3342 6.6915 21 6 6.6225 3.5342 1.2671 22 6 3.5660 -0.6969 -0.0068 23 8 2.2832 -1.0929 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 3.6971 3.2671 -0.0005 28 1 6.9650 2.5286 -1.3008 29 1 5.9733 3.7411 -2.1461 30 1 7.4372 4.2444 -1.2673 31 1 4.4115 5.4460 -0.3550 32 1 6.1360 5.9099 -0.1977 33 1 4.1190 5.2865 1.9510 34 1 5.5422 6.3606 2.0183 35 1 4.3110 6.5761 4.7545 36 1 7.6362 3.9020 1.1084 37 1 6.6404 2.4771 1.5321 38 1 4.4362 -1.3366 -0.0129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046253972.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:54 Heat of formation + Delta-G solvation = 14.573152 kcal Electronic energy + Delta-G solvation = -22243.787560 eV Core-core repulsion = 18895.949336 eV Total energy + Delta-G solvation = -3347.838224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.42617 -39.67202 -37.21200 -34.91374 -33.87431 -32.36851 -31.67095 -29.93899 -28.64497 -27.87144 -25.64211 -24.43769 -23.38762 -21.68441 -20.64916 -20.05677 -18.98519 -18.03111 -16.94106 -16.82959 -16.25097 -15.51314 -14.64073 -14.54619 -14.51566 -13.96963 -13.76345 -13.66321 -13.34733 -13.14466 -12.77395 -12.66271 -12.07386 -11.88018 -11.77600 -11.61902 -11.21793 -10.88536 -10.82917 -10.81298 -10.43023 -10.31879 -10.03958 -9.96927 -9.60777 -9.45488 -9.01372 -8.57260 -8.47374 -6.73392 -5.66568 -2.97224 1.15015 2.05695 2.53327 3.38466 3.43990 3.49215 3.51076 3.61057 3.88634 4.55592 4.76073 4.86209 5.11649 5.15594 5.16923 5.36236 5.43254 5.51347 5.57863 5.65253 5.68171 5.78639 6.01356 6.09503 6.19009 6.20286 6.38724 6.44810 6.58748 6.71637 6.86372 7.15574 7.45192 7.59257 7.65002 7.86082 7.97493 8.32057 8.55202 9.28763 9.89170 10.55994 11.46029 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015468 B = 0.005600 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.779738 B = 4998.656865 C = 5879.349752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.190 3.810 3 N -0.458 5.458 4 C -0.060 4.060 5 C 0.603 3.397 6 O -0.539 6.539 7 N -0.681 5.681 8 C 0.154 3.846 9 C -0.148 4.148 10 C -0.145 4.145 11 C 0.177 3.823 12 N -0.603 5.603 13 C -0.221 4.221 14 H 0.076 0.924 15 C -0.009 4.009 16 N -0.922 5.922 17 Si 0.909 3.091 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.282 1.282 21 C 0.131 3.869 22 C 0.003 3.997 23 O -0.201 6.201 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.406 0.594 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.251 0.749 36 H 0.027 0.973 37 H 0.055 0.945 38 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.955 -10.000 -12.381 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.019 4.019 3 N -0.188 5.188 4 C -0.181 4.181 5 C 0.388 3.612 6 O -0.417 6.417 7 N -0.329 5.329 8 C 0.067 3.933 9 C -0.207 4.207 10 C -0.184 4.184 11 C 0.052 3.948 12 N -0.329 5.329 13 C -0.350 4.350 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.570 5.570 17 Si 0.739 3.261 18 H -0.216 1.216 19 H -0.219 1.219 20 H -0.207 1.207 21 C 0.004 3.996 22 C -0.070 4.070 23 O -0.087 6.087 24 H 0.111 0.889 25 H 0.107 0.893 26 H 0.122 0.878 27 H 0.242 0.758 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -6.471 -9.603 -12.165 16.795 hybrid contribution -0.037 -0.502 1.118 1.226 sum -6.508 -10.105 -11.047 16.325 Atomic orbital electron populations 1.20290 0.81013 1.05410 1.04693 1.26320 0.96646 0.78398 1.00513 1.70789 1.00908 1.29890 1.17262 1.21964 0.92219 0.93140 1.10733 1.16645 0.85939 0.82029 0.76618 1.90765 1.24000 1.75512 1.51422 1.45605 1.10274 1.04763 1.72301 1.21619 0.85849 0.89870 0.95959 1.21985 0.99517 1.03276 0.95912 1.23262 1.00843 0.93253 1.01029 1.21166 0.96273 0.92607 0.84784 1.44435 1.54449 1.32706 1.01297 1.19060 1.29830 1.05922 0.80173 0.90632 1.24780 1.00084 0.97678 0.97935 1.69963 1.36145 1.18396 1.32531 0.86137 0.77182 0.77440 0.85300 1.21642 1.21863 1.20736 1.21886 0.93603 0.96812 0.87255 1.25227 0.84647 0.95770 1.01404 1.84358 1.16806 1.37954 1.69591 0.88878 0.89276 0.87813 0.75835 0.91062 0.93082 0.91675 0.91729 0.90746 0.94010 0.93458 0.93890 0.95545 0.92700 0.75405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 36.01 0.38 -0.02 16 2 C 0.19 2.30 8.30 -13.08 -0.11 2.20 16 3 N -0.46 -7.00 11.06 -7.66 -0.08 -7.08 16 4 C -0.06 -0.98 6.99 -83.02 -0.58 -1.56 16 5 C 0.60 11.13 7.21 -12.52 -0.09 11.04 16 6 O -0.54 -10.80 13.69 5.27 0.07 -10.72 16 7 N -0.68 -12.47 5.17 -46.54 -0.24 -12.71 16 8 C 0.15 2.87 0.83 -129.51 -0.11 2.76 16 9 C -0.15 -2.34 8.60 37.16 0.32 -2.02 16 10 C -0.15 -2.70 6.00 -24.74 -0.15 -2.85 16 11 C 0.18 4.33 5.38 -3.06 -0.02 4.31 16 12 N -0.60 -15.99 3.40 -170.08 -0.58 -16.57 16 13 C -0.22 -6.45 10.26 -15.06 -0.15 -6.61 16 14 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 15 C -0.01 -0.26 5.48 -17.43 -0.10 -0.36 16 16 N -0.92 -27.60 10.36 55.49 0.57 -27.02 16 17 Si 0.91 22.85 29.56 -169.99 -5.02 17.83 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 21 C 0.13 2.98 6.10 -2.53 -0.02 2.97 16 22 C 0.00 0.04 11.95 29.96 0.36 0.40 16 23 O -0.20 -2.45 10.73 6.52 0.07 -2.38 16 24 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.41 7.19 8.22 -40.82 -0.34 6.85 16 28 H 0.07 1.20 6.53 -51.93 -0.34 0.86 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 31 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 32 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 33 H 0.04 1.13 7.55 -51.93 -0.39 0.73 16 34 H 0.05 1.28 7.36 -51.93 -0.38 0.90 16 35 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 37 H 0.05 1.34 6.31 -51.93 -0.33 1.01 16 38 H 0.23 2.30 8.06 -52.49 -0.42 1.87 16 LS Contribution 317.87 15.07 4.79 4.79 Total: -1.00 -34.37 317.87 -5.79 -40.16 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.11 Total: 3.44 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -0.26 Total: 10.27 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -0.33 Total: -63.39 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.14 Total: -13.10 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.37 -5.79 -40.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046253972.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.737 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds