Wall clock time and date at job start Tue Mar 31 2020 01:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30010 * 127.33703 * 2 1 4 4 O 1.20657 * 112.30328 * 180.02562 * 3 2 1 5 5 C 1.33491 * 113.15656 * 359.97438 * 4 3 2 6 6 C 1.37365 * 106.34389 * 0.02562 * 5 4 3 7 7 C 1.47393 * 128.56843 * 179.73701 * 6 5 4 8 8 O 1.21613 * 119.99994 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00030 * 0.02562 * 7 6 5 10 10 C 1.46503 * 120.00255 * 180.02562 * 9 7 6 11 11 C 1.52995 * 110.88858 * 62.42570 * 10 9 7 12 12 C 1.55156 * 111.00361 * 186.35323 * 10 9 7 13 13 C 1.54323 * 102.94609 * 82.57159 * 12 10 9 14 14 N 1.47032 * 107.26841 * 22.18909 * 13 12 10 15 15 C 1.36935 * 125.64632 * 181.02479 * 14 13 12 16 16 H 1.07995 * 119.99987 * 180.02562 * 15 14 13 17 17 C 1.38819 * 120.00015 * 0.04376 * 15 14 13 18 18 N 1.31617 * 120.00073 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99927 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47201 * 89.99756 * 19 17 15 21 21 H 1.48495 * 109.47400 * 209.99765 * 19 17 15 22 22 H 1.48501 * 109.47105 * 330.00154 * 19 17 15 23 23 C 1.47419 * 108.70443 * 1.06335 * 14 13 12 24 24 H 1.08999 * 109.46835 * 269.97871 * 1 2 3 25 25 H 1.09002 * 109.47070 * 29.97411 * 1 2 3 26 26 H 1.09001 * 109.47058 * 149.97701 * 1 2 3 27 27 H 1.07998 * 126.83453 * 179.97438 * 5 4 3 28 28 H 0.97006 * 120.00241 * 0.02562 * 9 7 6 29 29 H 1.09007 * 109.46668 * 60.69978 * 11 10 9 30 30 H 1.08996 * 109.47587 * 180.70145 * 11 10 9 31 31 H 1.09000 * 109.47178 * 300.70647 * 11 10 9 32 32 H 1.08996 * 110.71956 * 200.93120 * 12 10 9 33 33 H 1.08998 * 110.72138 * 324.20837 * 12 10 9 34 34 H 1.09003 * 109.88430 * 262.77905 * 13 12 10 35 35 H 1.09000 * 109.88797 * 141.60537 * 13 12 10 36 36 H 0.96997 * 120.00079 * 179.97438 * 18 17 15 37 37 H 1.08997 * 110.36446 * 217.03474 * 23 14 13 38 38 H 1.08994 * 110.46034 * 94.75301 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6494 -0.6008 -0.0004 6 6 2.3991 -1.1697 -0.0003 7 6 2.0400 -2.5992 -0.0054 8 8 0.8704 -2.9324 -0.0050 9 7 3.0078 -3.5371 -0.0106 10 6 2.6509 -4.9580 -0.0163 11 6 1.8748 -5.3205 -1.2840 12 6 3.9119 -5.8488 0.1387 13 6 4.1459 -5.8542 1.6641 14 7 2.8648 -5.5198 2.3034 15 6 2.6523 -5.4018 3.6510 16 1 1.6697 -5.1518 4.0228 17 6 3.7000 -5.6033 4.5392 18 7 4.8975 -5.9082 4.0861 19 14 3.4102 -5.4416 6.3775 20 1 3.0129 -6.7599 6.9339 21 1 4.6588 -4.9820 7.0369 22 1 2.3283 -4.4544 6.6231 23 6 1.8469 -5.3336 1.2535 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 4.5966 -1.1196 -0.0011 28 1 3.9408 -3.2715 -0.0106 29 1 2.4943 -5.1216 -2.1585 30 1 1.6107 -6.3776 -1.2586 31 1 0.9666 -4.7202 -1.3381 32 1 3.7183 -6.8577 -0.2253 33 1 4.7624 -5.4069 -0.3803 34 1 4.8968 -5.1090 1.9266 35 1 4.4736 -6.8429 1.9854 36 1 5.6296 -6.0486 4.7067 37 1 1.1663 -4.5264 1.5241 38 1 1.2927 -6.2581 1.0919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046582639.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:02 Heat of formation + Delta-G solvation = 29.448705 kcal Electronic energy + Delta-G solvation = -22454.411159 eV Core-core repulsion = 19107.217987 eV Total energy + Delta-G solvation = -3347.193172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.93746 -41.17102 -38.82886 -35.74387 -35.43506 -34.03306 -32.86748 -31.48972 -30.31958 -29.65553 -27.50226 -26.02860 -25.18572 -22.47018 -22.26252 -21.81783 -20.37861 -19.41775 -18.75816 -18.70842 -17.48476 -17.09710 -16.64930 -16.09754 -15.96156 -15.54268 -15.06185 -14.72050 -14.29473 -14.21662 -14.03592 -13.86266 -13.56352 -13.43972 -13.37151 -13.06581 -12.83946 -12.74738 -12.34598 -12.12224 -12.04039 -11.96904 -11.69483 -11.54482 -10.95387 -10.81457 -10.76491 -10.69986 -10.00003 -8.84840 -7.85888 -5.18508 0.10731 0.73294 1.43594 1.44145 1.52780 1.89299 2.21933 2.33634 2.47959 3.02283 3.32143 3.33414 3.58412 3.72760 3.86328 4.03539 4.07246 4.21328 4.43164 4.60000 4.61797 4.67693 4.72528 4.75520 4.82718 4.90797 4.96926 5.07208 5.11464 5.17066 5.39068 5.43906 5.64668 5.71004 5.79839 6.21412 6.58383 7.13043 7.17945 7.24697 7.78872 8.42437 9.23795 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.005817 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.610899 B = 4812.259792 C = 5588.788709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.055 3.945 3 N -0.381 5.381 4 O 0.096 5.904 5 C 0.027 3.973 6 C -0.280 4.280 7 C 0.596 3.404 8 O -0.560 6.560 9 N -0.689 5.689 10 C 0.169 3.831 11 C -0.140 4.140 12 C -0.127 4.127 13 C 0.183 3.817 14 N -0.620 5.620 15 C -0.240 4.240 16 H 0.066 0.934 17 C -0.057 4.057 18 N -0.944 5.944 19 Si 0.969 3.031 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.126 3.874 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.270 0.730 28 H 0.409 0.591 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.021 0.979 35 H 0.007 0.993 36 H 0.248 0.752 37 H 0.032 0.968 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 7.758 -13.554 15.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 N -0.090 5.090 4 O 0.038 5.962 5 C -0.055 4.055 6 C -0.288 4.288 7 C 0.384 3.616 8 O -0.440 6.440 9 N -0.340 5.340 10 C 0.082 3.918 11 C -0.199 4.199 12 C -0.165 4.165 13 C 0.058 3.942 14 N -0.346 5.346 15 C -0.369 4.369 16 H 0.084 0.916 17 C -0.250 4.250 18 N -0.593 5.593 19 Si 0.798 3.202 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.000 4.000 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.286 0.714 28 H 0.246 0.754 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.039 0.961 35 H 0.025 0.975 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.323 8.811 -13.366 16.063 hybrid contribution 0.254 -0.858 1.574 1.811 sum -1.069 7.953 -11.792 14.263 Atomic orbital electron populations 1.20271 0.84254 1.04608 1.04034 1.25198 0.99828 0.86616 0.99087 1.73646 0.89824 1.23960 1.21567 1.84526 1.20935 1.23830 1.66885 1.27178 1.01011 0.83057 0.94250 1.22387 0.94207 0.94997 1.17189 1.16963 0.85348 0.83585 0.75741 1.90717 1.19543 1.82339 1.51397 1.45544 1.09363 1.05256 1.73820 1.21368 0.95964 0.79667 0.94753 1.21923 1.00399 1.02263 0.95288 1.23111 0.96764 1.00148 0.96497 1.20980 0.87158 0.97321 0.88694 1.44673 1.06613 1.82220 1.01126 1.19288 0.95155 1.40191 0.82276 0.91601 1.25451 0.95589 1.02325 1.01668 1.70121 1.00574 1.55150 1.33432 0.85221 0.76682 0.77640 0.80652 1.21312 1.21537 1.20358 1.22015 0.91976 0.97269 0.88762 0.89884 0.88834 0.89408 0.71429 0.75419 0.90212 0.90671 0.92512 0.88995 0.87920 0.96078 0.97459 0.94290 0.94974 0.95779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.80 10.15 71.24 0.72 -1.08 16 2 C 0.06 1.53 7.58 45.16 0.34 1.87 16 3 N -0.38 -10.36 12.01 -44.78 -0.54 -10.90 16 4 O 0.10 2.19 11.06 77.01 0.85 3.05 16 5 C 0.03 0.52 11.85 67.61 0.80 1.32 16 6 C -0.28 -7.57 6.47 -18.74 -0.12 -7.69 16 7 C 0.60 18.90 7.20 86.65 0.62 19.52 16 8 O -0.56 -21.11 12.46 -4.07 -0.05 -21.16 16 9 N -0.69 -19.69 5.17 -419.89 -2.17 -21.86 16 10 C 0.17 5.35 0.82 5.00 0.00 5.35 16 11 C -0.14 -3.65 8.62 71.98 0.62 -3.03 16 12 C -0.13 -3.89 5.99 31.78 0.19 -3.70 16 13 C 0.18 8.31 5.36 86.73 0.47 8.77 16 14 N -0.62 -31.44 3.39 -691.97 -2.35 -33.79 16 15 C -0.24 -13.69 10.28 84.04 0.86 -12.83 16 16 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 17 C -0.06 -3.22 5.49 84.86 0.47 -2.76 16 18 N -0.94 -54.93 10.31 21.65 0.22 -54.71 16 19 Si 0.97 46.18 29.55 68.60 2.03 48.20 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 C 0.13 5.39 6.11 86.86 0.53 5.92 16 24 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.09 2.27 7.11 -2.39 -0.02 2.25 16 27 H 0.27 2.35 7.68 -2.91 -0.02 2.33 16 28 H 0.41 9.19 7.67 -92.70 -0.71 8.48 16 29 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.07 1.80 8.13 -2.39 -0.02 1.78 16 31 H 0.06 1.69 6.45 -2.39 -0.02 1.67 16 32 H 0.09 2.57 8.04 -2.39 -0.02 2.55 16 33 H 0.10 2.42 8.05 -2.39 -0.02 2.40 16 34 H 0.02 1.04 7.38 -2.39 -0.02 1.03 16 35 H 0.01 0.37 7.51 -2.39 -0.02 0.36 16 36 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 37 H 0.03 1.52 6.31 -2.39 -0.02 1.51 16 38 H 0.02 1.04 8.03 -2.39 -0.02 1.02 16 Total: -1.00 -73.44 314.12 3.88 -69.56 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.38 Total: 9.93 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 5.51 Total: 11.67 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -4.83 Total: -121.26 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.80 Total: -18.11 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -73.44 3.88 -69.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046582639.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.009 kcal (2) G-P(sol) polarization free energy of solvation -73.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds