Wall clock time and date at job start Tue Mar 31 2020 02:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41263 * 128.07738 * 2 1 4 4 N 1.30128 * 106.59206 * 179.97438 * 3 2 1 5 5 O 1.20890 * 111.98430 * 359.71960 * 4 3 2 6 6 C 1.34645 * 111.46548 * 0.45230 * 5 4 3 7 7 C 1.47511 * 126.94833 * 179.82806 * 6 5 4 8 8 O 1.21584 * 120.00215 * 179.68765 * 7 6 5 9 9 N 1.34778 * 119.99722 * 359.68687 * 7 6 5 10 10 C 1.46502 * 119.99873 * 180.02562 * 9 7 6 11 11 C 1.53000 * 110.91392 * 62.45132 * 10 9 7 12 12 C 1.55448 * 111.01096 * 186.50321 * 10 9 7 13 13 C 1.54321 * 102.96961 * 82.52411 * 12 10 9 14 14 N 1.47026 * 107.26791 * 22.19024 * 13 12 10 15 15 C 1.36940 * 125.64258 * 181.03445 * 14 13 12 16 16 H 1.08003 * 119.99660 * 180.02562 * 15 14 13 17 17 C 1.38811 * 120.00559 * 0.02875 * 15 14 13 18 18 N 1.31617 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00230 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46764 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46723 * 120.00066 * 19 17 15 22 22 H 1.48499 * 109.47140 * 239.99844 * 19 17 15 23 23 C 1.47419 * 108.70576 * 1.06162 * 14 13 12 24 24 H 1.08998 * 109.47139 * 270.00333 * 1 2 3 25 25 H 1.08994 * 109.46758 * 30.00354 * 1 2 3 26 26 H 1.09001 * 109.47005 * 150.00447 * 1 2 3 27 27 H 1.08003 * 126.70694 * 0.03113 * 3 2 1 28 28 H 0.97001 * 120.00073 * 359.97438 * 9 7 6 29 29 H 1.09000 * 109.47194 * 297.54709 * 11 10 9 30 30 H 1.09001 * 109.47578 * 57.55154 * 11 10 9 31 31 H 1.09003 * 109.46933 * 177.54882 * 11 10 9 32 32 H 1.08998 * 110.70855 * 324.15215 * 12 10 9 33 33 H 1.08998 * 110.85957 * 200.96831 * 12 10 9 34 34 H 1.08998 * 109.88101 * 262.77542 * 13 12 10 35 35 H 1.09000 * 109.88483 * 141.60664 * 13 12 10 36 36 H 0.97004 * 120.00521 * 179.97438 * 18 17 15 37 37 H 1.09002 * 110.36926 * 94.70918 * 23 14 13 38 38 H 1.08995 * 110.36556 * 216.92202 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6354 0.0006 5 8 3.5996 -0.5735 0.0064 6 6 2.3509 -1.0771 0.0007 7 6 1.9695 -2.5021 0.0015 8 8 0.7952 -2.8172 0.0016 9 7 2.9229 -3.4548 0.0021 10 6 2.5442 -4.8700 0.0023 11 6 1.7649 -5.2270 -1.2650 12 6 3.7928 -5.7811 0.1673 13 6 4.0219 -5.7816 1.6935 14 7 2.7442 -5.4237 2.3267 15 6 2.5293 -5.2946 3.6730 16 1 1.5495 -5.0271 4.0402 17 6 3.5707 -5.5074 4.5657 18 7 4.7647 -5.8338 4.1182 19 14 3.2777 -5.3306 6.4021 20 1 1.8601 -4.9599 6.6436 21 1 3.5737 -6.6199 7.0769 22 1 4.1662 -4.2721 6.9455 23 6 1.7326 -5.2274 1.2724 24 1 -0.3633 0.0001 1.0276 25 1 -0.3632 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 2.0947 2.1542 0.0005 28 1 3.8598 -3.2034 0.0016 29 1 0.8383 -4.6538 -1.2955 30 1 2.3680 -4.9897 -2.1415 31 1 1.5332 -6.2921 -1.2611 32 1 4.6518 -5.3554 -0.3514 33 1 3.5878 -6.7894 -0.1922 34 1 4.7835 -5.0468 1.9542 35 1 4.3331 -6.7735 2.0213 36 1 5.4927 -5.9822 4.7420 37 1 1.1660 -6.1451 1.1148 38 1 1.0626 -4.4095 1.5371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046739191.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:39 Heat of formation + Delta-G solvation = 33.057378 kcal Electronic energy + Delta-G solvation = -22543.621728 eV Core-core repulsion = 19196.585040 eV Total energy + Delta-G solvation = -3347.036688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.02531 -41.27412 -38.94459 -36.03469 -35.48854 -33.98879 -33.12832 -31.65090 -30.35971 -29.20745 -27.51281 -25.69079 -24.98340 -23.54121 -22.27972 -21.69451 -20.59293 -19.69766 -18.80645 -18.76864 -17.18867 -16.82929 -16.65183 -16.08275 -15.91677 -15.55011 -15.23698 -14.71950 -14.24886 -14.16473 -14.09732 -13.89051 -13.57622 -13.54676 -13.40284 -13.07809 -12.86761 -12.75203 -12.28509 -12.15760 -12.03386 -11.98080 -11.71657 -11.59033 -11.43471 -10.98333 -10.71874 -10.53096 -10.07033 -8.86299 -7.86304 -5.19597 -0.26978 1.07607 1.42917 1.43040 1.53479 1.55325 1.95535 2.21692 2.47443 3.19739 3.32392 3.49570 3.61352 3.70027 3.79671 4.00170 4.04392 4.18369 4.33460 4.64217 4.69630 4.74156 4.76933 4.82124 4.89947 4.94541 4.95524 5.05453 5.08715 5.29821 5.37422 5.43550 5.56299 5.67392 5.77512 6.20243 6.35777 6.93023 7.04960 7.11611 7.77936 8.41447 9.23873 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.005930 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.369414 B = 4720.452458 C = 5469.578496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.123 4.123 3 C 0.001 3.999 4 N -0.367 5.367 5 O 0.097 5.903 6 C -0.106 4.106 7 C 0.606 3.394 8 O -0.530 6.530 9 N -0.686 5.686 10 C 0.165 3.835 11 C -0.139 4.139 12 C -0.128 4.128 13 C 0.183 3.817 14 N -0.621 5.621 15 C -0.238 4.238 16 H 0.071 0.929 17 C -0.062 4.062 18 N -0.947 5.947 19 Si 0.971 3.029 20 H -0.271 1.271 21 H -0.289 1.289 22 H -0.293 1.293 23 C 0.127 3.873 24 H 0.080 0.920 25 H 0.106 0.894 26 H 0.075 0.925 27 H 0.238 0.762 28 H 0.410 0.590 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.014 0.986 35 H 0.010 0.990 36 H 0.247 0.753 37 H 0.033 0.967 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.532 9.799 -13.576 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C -0.177 4.177 4 N -0.070 5.070 5 O 0.028 5.972 6 C -0.171 4.171 7 C 0.390 3.610 8 O -0.408 6.408 9 N -0.336 5.336 10 C 0.078 3.922 11 C -0.198 4.198 12 C -0.166 4.166 13 C 0.058 3.942 14 N -0.348 5.348 15 C -0.367 4.367 16 H 0.089 0.911 17 C -0.255 4.255 18 N -0.596 5.596 19 Si 0.800 3.200 20 H -0.195 1.195 21 H -0.215 1.215 22 H -0.220 1.220 23 C 0.001 3.999 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.094 0.906 27 H 0.254 0.746 28 H 0.246 0.754 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.032 0.968 35 H 0.028 0.972 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.047 10.059 -13.390 17.492 hybrid contribution -0.023 -0.055 1.544 1.545 sum -5.070 10.004 -11.846 16.313 Atomic orbital electron populations 1.20381 0.84852 1.04888 1.03768 1.22054 1.00087 0.89984 1.00630 1.25620 0.86570 1.03461 1.02071 1.73742 1.24568 0.91217 1.17491 1.84949 1.28381 1.15834 1.68036 1.24157 0.85220 0.96383 1.11383 1.16592 0.85650 0.81858 0.76884 1.90771 1.17831 1.80825 1.51368 1.45757 1.09710 1.05751 1.72353 1.21567 0.96043 0.79072 0.95468 1.21931 1.00329 1.02744 0.94777 1.23164 0.96877 1.00158 0.96441 1.20959 0.87323 0.97136 0.88796 1.44696 1.07179 1.81569 1.01316 1.19369 0.95639 1.39526 0.82162 0.91083 1.25525 0.95641 1.02358 1.01960 1.70153 1.01183 1.54885 1.33383 0.85109 0.77477 0.76937 0.80452 1.19539 1.21548 1.21969 1.22030 0.91901 0.97760 0.88233 0.90116 0.87521 0.90607 0.74566 0.75412 0.92002 0.90444 0.90041 0.88597 0.88413 0.96760 0.97191 0.94388 0.94962 0.94531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 9.96 71.23 0.71 -0.87 16 2 C -0.12 -2.97 6.37 -19.45 -0.12 -3.09 16 3 C 0.00 0.01 12.14 85.69 1.04 1.06 16 4 N -0.37 -10.08 12.04 -58.54 -0.70 -10.78 16 5 O 0.10 2.88 11.04 65.79 0.73 3.60 16 6 C -0.11 -3.13 7.29 24.39 0.18 -2.95 16 7 C 0.61 19.93 7.21 86.69 0.63 20.56 16 8 O -0.53 -19.01 11.92 -3.98 -0.05 -19.06 16 9 N -0.69 -21.93 5.17 -419.33 -2.17 -24.10 16 10 C 0.16 5.41 0.83 5.10 0.00 5.41 16 11 C -0.14 -3.60 8.60 71.98 0.62 -2.98 16 12 C -0.13 -4.20 6.00 31.88 0.19 -4.01 16 13 C 0.18 8.69 5.36 86.73 0.47 9.16 16 14 N -0.62 -32.13 3.39 -692.01 -2.35 -34.48 16 15 C -0.24 -13.72 10.28 84.03 0.86 -12.86 16 16 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 17 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 18 N -0.95 -56.96 10.31 21.65 0.22 -56.74 16 19 Si 0.97 46.92 29.55 68.60 2.03 48.95 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 23 C 0.13 5.40 6.10 86.85 0.53 5.93 16 24 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.08 1.73 6.73 -2.39 -0.02 1.71 16 27 H 0.24 2.68 8.06 -2.91 -0.02 2.66 16 28 H 0.41 12.12 8.32 -92.71 -0.77 11.35 16 29 H 0.06 1.76 6.53 -2.39 -0.02 1.74 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 32 H 0.10 2.61 8.05 -2.39 -0.02 2.59 16 33 H 0.10 2.83 8.03 -2.39 -0.02 2.81 16 34 H 0.01 0.76 7.38 -2.39 -0.02 0.74 16 35 H 0.01 0.53 7.51 -2.39 -0.02 0.51 16 36 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 37 H 0.03 1.35 8.04 -2.39 -0.02 1.33 16 38 H 0.04 1.69 6.31 -2.39 -0.02 1.68 16 Total: -1.00 -71.11 314.02 3.59 -67.52 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.31 Total: 12.85 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 5.57 Total: 12.24 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -5.00 Total: -126.10 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.68 Total: -15.45 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -71.11 3.59 -67.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046739191.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.576 kcal (2) G-P(sol) polarization free energy of solvation -71.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds