Wall clock time and date at job start Tue Mar 31 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35312 * 128.03329 * 2 1 4 4 O 1.34015 * 106.66911 * 180.02562 * 3 2 1 5 5 N 1.20913 * 111.84278 * 359.97438 * 4 3 2 6 6 C 1.30981 * 111.43918 * 0.02562 * 5 4 3 7 7 C 1.48329 * 126.93829 * 180.02562 * 6 5 4 8 8 O 1.21495 * 120.00157 * 179.97438 * 7 6 5 9 9 N 1.34773 * 119.99906 * 359.97438 * 7 6 5 10 10 C 1.46504 * 120.00245 * 179.97438 * 9 7 6 11 11 C 1.53004 * 110.88486 * 62.42366 * 10 9 7 12 12 C 1.55155 * 111.00909 * 186.35040 * 10 9 7 13 13 C 1.54321 * 102.94163 * 82.57090 * 12 10 9 14 14 N 1.47021 * 107.27269 * 22.19427 * 13 12 10 15 15 C 1.36938 * 125.64699 * 181.02056 * 14 13 12 16 16 H 1.07998 * 119.99615 * 180.02562 * 15 14 13 17 17 C 1.38811 * 120.00288 * 0.04442 * 15 14 13 18 18 N 1.31617 * 119.99957 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00098 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47150 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47279 * 120.00122 * 19 17 15 22 22 H 1.48504 * 109.47178 * 240.00256 * 19 17 15 23 23 C 1.47425 * 108.70139 * 1.06076 * 14 13 12 24 24 H 1.09000 * 109.47398 * 269.94463 * 1 2 3 25 25 H 1.09004 * 109.47509 * 29.94944 * 1 2 3 26 26 H 1.09001 * 109.46928 * 149.94397 * 1 2 3 27 27 H 1.08006 * 126.67119 * 0.07825 * 3 2 1 28 28 H 0.97002 * 120.00542 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.46612 * 60.70668 * 11 10 9 30 30 H 1.09000 * 109.47054 * 180.70321 * 11 10 9 31 31 H 1.08991 * 109.47097 * 300.70320 * 11 10 9 32 32 H 1.08992 * 110.72322 * 200.93890 * 12 10 9 33 33 H 1.09011 * 110.71500 * 324.20936 * 12 10 9 34 34 H 1.09007 * 109.88236 * 262.77620 * 13 12 10 35 35 H 1.09000 * 109.87923 * 141.61585 * 13 12 10 36 36 H 0.96996 * 120.00127 * 180.02562 * 18 17 15 37 37 H 1.08999 * 110.36561 * 217.03120 * 23 14 13 38 38 H 1.08994 * 110.46246 * 94.75611 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3407 1.0658 0.0000 4 8 3.5888 0.5776 -0.0006 5 7 3.5989 -0.6315 -0.0004 6 6 2.3837 -1.1204 -0.0003 7 6 1.9993 -2.5530 0.0005 8 8 0.8257 -2.8671 0.0010 9 7 2.9520 -3.5064 0.0006 10 6 2.5724 -4.9214 0.0019 11 6 1.7911 -5.2777 -1.2644 12 6 3.8187 -5.8315 0.1620 13 6 4.0519 -5.8330 1.6875 14 7 2.7762 -5.4749 2.3245 15 6 2.5650 -5.3468 3.6714 16 1 1.5863 -5.0791 4.0414 17 6 3.6088 -5.5605 4.5611 18 7 4.8017 -5.8859 4.1101 19 14 3.3209 -5.3850 6.3983 20 1 1.9040 -5.0142 6.6441 21 1 3.6184 -6.6748 7.0715 22 1 4.2111 -4.3270 6.9401 23 6 1.7618 -5.2776 1.2730 24 1 -0.3634 -0.0010 1.0276 25 1 -0.3634 0.8904 -0.5131 26 1 -0.3633 -0.8895 -0.5147 27 1 2.0558 2.1076 0.0012 28 1 3.8891 -3.2557 -0.0002 29 1 2.4141 -5.0933 -2.1396 30 1 1.5100 -6.3304 -1.2338 31 1 0.8927 -4.6633 -1.3220 32 1 3.6092 -6.8390 -0.1971 33 1 4.6765 -5.4058 -0.3589 34 1 4.8147 -5.0986 1.9466 35 1 4.3637 -6.8252 2.0138 36 1 5.5311 -6.0356 4.7318 37 1 1.0940 -4.4583 1.5392 38 1 1.1929 -6.1939 1.1157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046759781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:20 Heat of formation + Delta-G solvation = 30.496937 kcal Electronic energy + Delta-G solvation = -22491.081744 eV Core-core repulsion = 19143.934026 eV Total energy + Delta-G solvation = -3347.147717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.13171 -41.30068 -38.97551 -35.86618 -35.60812 -34.06708 -33.08098 -31.64687 -30.41316 -29.09655 -27.57574 -26.12004 -25.24568 -22.65512 -22.49303 -21.86538 -20.50577 -19.50411 -18.83665 -18.78090 -17.53561 -17.17882 -16.71943 -16.13728 -15.75098 -15.58782 -15.29656 -14.72942 -14.25753 -14.20854 -14.09470 -13.93879 -13.60968 -13.46917 -13.32511 -13.13802 -12.89591 -12.80266 -12.35479 -12.21141 -12.08567 -12.02235 -11.76878 -11.65310 -11.32059 -10.97622 -10.76424 -10.38625 -10.13219 -8.91753 -7.90259 -5.24465 0.11575 0.74488 1.39758 1.40726 1.51297 1.85537 2.11668 2.32354 2.44200 2.90771 3.28154 3.46751 3.60630 3.68566 3.93701 3.97774 4.11156 4.11979 4.46216 4.56982 4.63351 4.69561 4.79081 4.81618 4.83490 4.87449 4.95639 4.98520 5.01135 5.29656 5.35597 5.37821 5.53509 5.60681 5.70738 6.15146 6.35868 6.96410 7.06706 7.11674 7.72485 8.36795 9.20122 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.005883 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.864268 B = 4758.440093 C = 5518.462834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.173 4.173 3 C -0.038 4.038 4 O 0.131 5.869 5 N -0.354 5.354 6 C -0.059 4.059 7 C 0.595 3.405 8 O -0.542 6.542 9 N -0.688 5.688 10 C 0.163 3.837 11 C -0.139 4.139 12 C -0.129 4.129 13 C 0.185 3.815 14 N -0.621 5.621 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.062 4.062 18 N -0.948 5.948 19 Si 0.975 3.025 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.291 1.291 23 C 0.128 3.872 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.062 0.938 27 H 0.280 0.720 28 H 0.405 0.595 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.011 0.989 35 H 0.012 0.988 36 H 0.248 0.752 37 H 0.033 0.967 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.954 13.045 -13.383 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.179 4.179 3 C -0.118 4.118 4 O 0.053 5.947 5 N -0.053 5.053 6 C -0.217 4.217 7 C 0.380 3.620 8 O -0.419 6.419 9 N -0.338 5.338 10 C 0.077 3.923 11 C -0.197 4.197 12 C -0.167 4.167 13 C 0.060 3.940 14 N -0.347 5.347 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.256 4.256 18 N -0.597 5.597 19 Si 0.804 3.196 20 H -0.195 1.195 21 H -0.213 1.213 22 H -0.218 1.218 23 C 0.002 3.998 24 H 0.090 0.910 25 H 0.126 0.874 26 H 0.081 0.919 27 H 0.295 0.705 28 H 0.240 0.760 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.029 0.971 35 H 0.030 0.970 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.491 12.111 -13.196 18.466 hybrid contribution -0.141 0.029 1.481 1.488 sum -4.632 12.140 -11.715 17.495 Atomic orbital electron populations 1.20208 0.85569 1.04327 1.03175 1.21719 1.00107 0.89877 1.06162 1.26717 0.80423 1.02718 1.01990 1.84732 1.30939 1.14287 1.64738 1.74186 1.21839 0.92752 1.16537 1.23616 0.90756 0.97177 1.10116 1.17118 0.85497 0.83100 0.76330 1.90690 1.18127 1.82071 1.51034 1.45746 1.09550 1.05742 1.72743 1.21532 0.96045 0.79254 0.95511 1.21922 1.00231 1.02737 0.94817 1.23119 0.96757 1.00199 0.96621 1.20931 0.87307 0.97110 0.88642 1.44695 1.07083 1.81594 1.01374 1.19380 0.95729 1.39862 0.82091 0.91154 1.25583 0.95535 1.02155 1.02285 1.70162 1.01191 1.54738 1.33569 0.85054 0.77508 0.77076 0.79991 1.19531 1.21294 1.21784 1.22011 0.91860 0.97613 0.88301 0.91010 0.87365 0.91856 0.70497 0.75951 0.90623 0.89915 0.92166 0.88213 0.88978 0.97066 0.96956 0.94296 0.94881 0.94866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 10.01 71.24 0.71 -0.80 16 2 C -0.17 -4.11 6.34 -19.54 -0.12 -4.23 16 3 C -0.04 -0.60 12.24 67.14 0.82 0.22 16 4 O 0.13 2.99 11.18 71.88 0.80 3.80 16 5 N -0.35 -10.76 11.84 -49.52 -0.59 -11.35 16 6 C -0.06 -1.89 7.19 42.96 0.31 -1.58 16 7 C 0.59 22.05 7.24 86.93 0.63 22.68 16 8 O -0.54 -21.68 12.11 -3.70 -0.04 -21.73 16 9 N -0.69 -25.01 5.17 -419.01 -2.17 -27.18 16 10 C 0.16 5.90 0.82 5.00 0.00 5.90 16 11 C -0.14 -4.01 8.62 71.98 0.62 -3.39 16 12 C -0.13 -4.59 5.99 31.78 0.19 -4.40 16 13 C 0.18 9.26 5.36 86.73 0.47 9.72 16 14 N -0.62 -33.64 3.39 -692.00 -2.35 -35.99 16 15 C -0.24 -14.40 10.28 84.03 0.86 -13.54 16 16 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 17 C -0.06 -3.70 5.49 84.86 0.47 -3.24 16 18 N -0.95 -58.29 10.31 21.65 0.22 -58.06 16 19 Si 0.98 47.75 29.55 68.60 2.03 49.78 16 20 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 23 C 0.13 5.84 6.11 86.86 0.53 6.37 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.06 1.58 6.89 -2.39 -0.02 1.57 16 27 H 0.28 0.75 8.06 -2.91 -0.02 0.72 16 28 H 0.41 14.26 8.25 -92.71 -0.76 13.50 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 2.13 8.13 -2.39 -0.02 2.11 16 31 H 0.06 1.91 6.45 -2.39 -0.02 1.90 16 32 H 0.10 3.12 8.04 -2.39 -0.02 3.10 16 33 H 0.09 2.82 8.05 -2.38 -0.02 2.80 16 34 H 0.01 0.62 7.38 -2.38 -0.02 0.61 16 35 H 0.01 0.68 7.51 -2.39 -0.02 0.66 16 36 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.03 1.64 6.32 -2.39 -0.02 1.63 16 38 H 0.03 1.48 8.03 -2.39 -0.02 1.46 16 Total: -1.00 -76.56 314.23 3.72 -72.84 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.32 Total: 14.18 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 5.49 Total: 13.71 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -4.88 Total: -132.58 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.76 Total: -17.93 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -76.56 3.72 -72.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046759781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.339 kcal (2) G-P(sol) polarization free energy of solvation -76.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds