Wall clock time and date at job start Tue Mar 31 2020 01:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.35310 * 126.66420 * 2 1 4 4 C 1.42267 * 103.92561 * 180.02562 * 3 2 1 5 5 C 1.48323 * 126.94456 * 180.02562 * 4 3 2 6 6 O 1.21491 * 119.99992 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00147 * 180.02562 * 5 4 3 8 8 C 1.47022 * 125.64758 * 180.02562 * 7 5 4 9 9 C 1.54327 * 107.27336 * 178.97550 * 8 7 5 10 10 H 1.08993 * 110.72079 * 96.16743 * 9 8 7 11 11 C 1.52997 * 110.72042 * 219.44597 * 9 8 7 12 12 C 1.55165 * 102.94078 * 337.80587 * 9 8 7 13 13 H 1.08995 * 111.00547 * 153.57467 * 12 9 8 14 14 N 1.46503 * 111.00460 * 277.42885 * 12 9 8 15 15 C 1.36929 * 119.99753 * 204.99865 * 14 12 9 16 16 H 1.08001 * 120.00170 * 0.02562 * 15 14 12 17 17 C 1.38814 * 120.00033 * 180.02562 * 15 14 12 18 18 N 1.31619 * 120.00112 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99949 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47001 * 90.00101 * 19 17 15 21 21 H 1.48500 * 109.47366 * 210.00263 * 19 17 15 22 22 H 1.48503 * 109.46858 * 330.00428 * 19 17 15 23 23 C 1.47425 * 125.64906 * 0.04058 * 7 5 4 24 24 N 1.30992 * 106.11727 * 0.26595 * 4 3 2 25 25 O 1.20901 * 111.44045 * 359.53330 * 24 4 3 26 26 H 1.08998 * 109.47146 * 89.99452 * 1 2 3 27 27 H 1.09003 * 109.46750 * 209.99690 * 1 2 3 28 28 H 1.08997 * 109.46927 * 329.99273 * 1 2 3 29 29 H 1.08008 * 128.03928 * 0.02562 * 3 2 1 30 30 H 1.08997 * 109.88723 * 59.55959 * 8 7 5 31 31 H 1.09000 * 110.01436 * 298.46511 * 8 7 5 32 32 H 1.08999 * 109.47239 * 58.54617 * 11 9 8 33 33 H 1.09007 * 109.46791 * 178.54602 * 11 9 8 34 34 H 1.08997 * 109.47298 * 298.53811 * 11 9 8 35 35 H 0.97000 * 120.00029 * 24.99800 * 14 12 9 36 36 H 0.97006 * 119.99721 * 179.97438 * 18 17 15 37 37 H 1.08997 * 110.36855 * 322.93198 * 23 7 5 38 38 H 1.08999 * 110.36490 * 85.14513 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6272 0.5355 -0.0006 5 6 4.9076 1.2842 -0.0003 6 8 4.9009 2.4991 0.0010 7 7 6.0785 0.6168 -0.0015 8 6 7.4145 1.2305 -0.0009 9 6 8.4459 0.0828 0.0236 10 1 8.7925 -0.1458 -0.9842 11 6 9.6231 0.4323 0.9363 12 6 7.6325 -1.1030 0.6065 13 1 8.0382 -2.0574 0.2710 14 7 7.5866 -1.0395 2.0695 15 6 7.3930 -2.1822 2.7986 16 1 7.2745 -3.1304 2.2953 17 6 7.3489 -2.1220 4.1847 18 7 7.1633 -3.2205 4.8856 19 14 7.5545 -0.4821 5.0554 20 1 6.2245 0.1540 5.2333 21 1 8.1798 -0.7021 6.3842 22 1 8.4227 0.4055 4.2406 23 6 6.2318 -0.8495 -0.0040 24 7 3.4761 -0.7657 -0.0068 25 8 2.3074 -1.0749 -0.0007 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 2.0301 2.1272 0.0004 30 1 7.5349 1.8559 0.8837 31 1 7.5496 1.8311 -0.9004 32 1 9.2563 0.6257 1.9443 33 1 10.3253 -0.4012 0.9588 34 1 10.1264 1.3211 0.5559 35 1 7.6934 -0.1879 2.5215 36 1 7.1329 -3.1784 5.8543 37 1 5.4603 -1.3126 0.6112 38 1 6.1851 -1.2340 -1.0229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054360918.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:14 Heat of formation + Delta-G solvation = 28.630321 kcal Electronic energy + Delta-G solvation = -22314.538891 eV Core-core repulsion = 18967.310231 eV Total energy + Delta-G solvation = -3347.228660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.16750 -41.28228 -39.21752 -35.89647 -35.22710 -34.56705 -33.74799 -32.66546 -29.82559 -28.72478 -28.10237 -25.71988 -25.20694 -23.91043 -22.91814 -20.93497 -20.35775 -19.81880 -18.95509 -18.39432 -17.95723 -17.41156 -16.76410 -16.47036 -15.96687 -15.57211 -15.00279 -14.77289 -14.61864 -14.51132 -14.20913 -13.96987 -13.91516 -13.60276 -13.42326 -13.22852 -13.12401 -12.96104 -12.41215 -12.26334 -12.17443 -11.96753 -11.68507 -11.60085 -11.57049 -11.42318 -11.08909 -10.40932 -9.92309 -9.31690 -8.06487 -5.38478 0.02996 0.64095 1.28005 1.31231 1.36913 1.62950 1.96116 2.09598 2.40989 2.79480 3.22910 3.33659 3.49579 3.61071 3.78973 3.90899 3.96430 4.06038 4.27251 4.32772 4.52410 4.58323 4.62286 4.76605 4.76954 4.79721 4.84218 4.88006 4.91356 5.11565 5.15141 5.23503 5.28298 5.45945 5.74938 6.17744 6.20630 6.71256 7.02657 7.05970 7.78549 7.95890 9.14764 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015091 B = 0.006397 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.938808 B = 4375.700597 C = 5337.328092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.018 4.018 3 C -0.201 4.201 4 C -0.051 4.051 5 C 0.601 3.399 6 O -0.564 6.564 7 N -0.594 5.594 8 C 0.110 3.890 9 C -0.099 4.099 10 H 0.124 0.876 11 C -0.132 4.132 12 C 0.164 3.836 13 H 0.091 0.909 14 N -0.736 5.736 15 C -0.221 4.221 16 H 0.068 0.932 17 C -0.054 4.054 18 N -0.978 5.978 19 Si 0.935 3.065 20 H -0.295 1.295 21 H -0.291 1.291 22 H -0.252 1.252 23 C 0.077 3.923 24 N -0.343 5.343 25 O 0.119 5.881 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.195 0.805 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.362 0.638 36 H 0.257 0.743 37 H 0.069 0.931 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.822 8.861 -14.525 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.224 4.224 4 C -0.209 4.209 5 C 0.388 3.612 6 O -0.443 6.443 7 N -0.326 5.326 8 C -0.012 4.012 9 C -0.119 4.119 10 H 0.142 0.858 11 C -0.190 4.190 12 C 0.054 3.946 13 H 0.109 0.891 14 N -0.378 5.378 15 C -0.352 4.352 16 H 0.086 0.914 17 C -0.246 4.246 18 N -0.628 5.628 19 Si 0.764 3.236 20 H -0.222 1.222 21 H -0.217 1.217 22 H -0.176 1.176 23 C -0.048 4.048 24 N -0.044 5.044 25 O 0.043 5.957 26 H 0.132 0.868 27 H 0.117 0.883 28 H 0.131 0.869 29 H 0.212 0.788 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.196 0.804 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.950 8.321 -14.475 18.492 hybrid contribution -0.259 1.359 1.236 1.855 sum -8.209 9.680 -13.240 18.340 Atomic orbital electron populations 1.20677 0.79489 1.06470 1.06142 1.25372 0.98304 0.83979 1.00418 1.22661 0.88547 1.02793 1.08363 1.23500 0.97075 0.90702 1.09599 1.16807 0.81692 0.85687 0.77025 1.90716 1.87074 1.13266 1.53271 1.48359 1.05452 1.09165 1.69580 1.22226 0.80248 0.96469 1.02247 1.22583 0.94363 0.93036 1.01902 0.85774 1.21625 0.96838 1.02355 0.98160 1.21639 0.91789 0.98595 0.82542 0.89083 1.42706 1.87264 1.05786 1.02043 1.19055 1.39117 0.87950 0.89109 0.91419 1.25284 1.03034 0.99233 0.97075 1.69842 1.58988 1.28136 1.05874 0.85719 0.77711 0.81488 0.78655 1.22214 1.21743 1.17642 1.23422 1.01604 0.78439 1.01332 1.74381 0.97883 1.15676 1.16437 1.84779 1.11044 1.34579 1.65342 0.86847 0.88331 0.86912 0.78762 0.92713 0.89331 0.94754 0.91620 0.90316 0.80371 0.93425 0.91295 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.45 71.24 0.74 0.10 16 2 C -0.02 -0.38 7.47 25.01 0.19 -0.19 16 3 C -0.20 -5.22 10.92 22.60 0.25 -4.98 16 4 C -0.05 -1.77 7.02 42.96 0.30 -1.46 16 5 C 0.60 22.78 7.88 86.93 0.68 23.46 16 6 O -0.56 -23.14 17.28 -3.69 -0.06 -23.20 16 7 N -0.59 -20.98 3.33 -814.69 -2.71 -23.69 16 8 C 0.11 3.29 6.46 86.73 0.56 3.85 16 9 C -0.10 -2.68 3.42 -9.60 -0.03 -2.71 16 10 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 11 C -0.13 -3.57 8.80 71.98 0.63 -2.94 16 12 C 0.16 5.83 3.47 46.38 0.16 5.99 16 13 H 0.09 3.15 8.09 -2.39 -0.02 3.13 16 14 N -0.74 -33.51 4.36 -316.39 -1.38 -34.89 16 15 C -0.22 -12.32 10.44 84.04 0.88 -11.44 16 16 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 17 C -0.05 -3.21 5.50 84.86 0.47 -2.74 16 18 N -0.98 -62.58 13.97 21.65 0.30 -62.27 16 19 Si 0.94 46.83 27.74 68.60 1.90 48.73 16 20 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 21 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 22 H -0.25 -11.41 6.52 99.48 0.65 -10.76 16 23 C 0.08 2.71 5.86 86.85 0.51 3.22 16 24 N -0.34 -11.84 9.31 -49.51 -0.46 -12.30 16 25 O 0.12 3.39 11.18 71.92 0.80 4.19 16 26 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.20 4.16 8.06 -2.91 -0.02 4.14 16 30 H 0.05 1.79 7.82 -2.39 -0.02 1.77 16 31 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.03 1.13 6.34 -2.39 -0.02 1.11 16 33 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.36 16.65 4.19 -92.71 -0.39 16.26 16 36 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 37 H 0.07 2.89 6.24 -2.39 -0.01 2.88 16 38 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -75.74 317.81 4.37 -71.37 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.63 Total: 21.90 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 5.34 Total: 10.17 kcal Atomic # 7 Polarization: -128.91 SS G_CDS: -4.25 Total: -133.16 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.74 Total: -19.01 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.90 Total: 48.73 kcal Total: -75.74 4.37 -71.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054360918.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.999 kcal (2) G-P(sol) polarization free energy of solvation -75.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds