Wall clock time and date at job start Tue Mar 31 2020 01:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35318 * 126.66587 * 2 1 4 4 C 1.42273 * 103.92258 * 180.02562 * 3 2 1 5 5 C 1.48330 * 126.93921 * 180.02562 * 4 3 2 6 6 O 1.21500 * 119.99915 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00007 * 179.97438 * 5 4 3 8 8 C 1.47015 * 125.64881 * 179.97438 * 7 5 4 9 9 C 1.54324 * 107.27460 * 178.96382 * 8 7 5 10 10 H 1.08998 * 110.87639 * 96.24263 * 9 8 7 11 11 C 1.53003 * 110.72342 * 219.44679 * 9 8 7 12 12 C 1.55165 * 102.93877 * 337.80539 * 9 8 7 13 13 H 1.08994 * 111.00702 * 277.39167 * 12 9 8 14 14 N 1.46499 * 111.00257 * 153.57654 * 12 9 8 15 15 C 1.36931 * 120.00122 * 155.00211 * 14 12 9 16 16 H 1.08002 * 120.00098 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00429 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99535 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00187 * 180.27849 * 17 15 14 20 20 H 1.48501 * 109.46922 * 269.71949 * 19 17 15 21 21 H 1.48496 * 109.47354 * 29.72145 * 19 17 15 22 22 H 1.48501 * 109.47428 * 149.72253 * 19 17 15 23 23 C 1.47422 * 125.64591 * 0.02562 * 7 5 4 24 24 N 1.30983 * 106.12060 * 0.25706 * 4 3 2 25 25 O 1.20905 * 111.44397 * 359.54179 * 24 4 3 26 26 H 1.09007 * 109.46804 * 90.00144 * 1 2 3 27 27 H 1.08996 * 109.46986 * 210.00382 * 1 2 3 28 28 H 1.09003 * 109.47048 * 330.00691 * 1 2 3 29 29 H 1.07999 * 128.03796 * 0.03316 * 3 2 1 30 30 H 1.08999 * 109.88519 * 59.54230 * 8 7 5 31 31 H 1.09003 * 110.01319 * 298.45164 * 8 7 5 32 32 H 1.08993 * 109.47580 * 173.51811 * 11 9 8 33 33 H 1.08998 * 109.47057 * 293.52100 * 11 9 8 34 34 H 1.09008 * 109.47056 * 53.51467 * 11 9 8 35 35 H 0.97001 * 119.99790 * 334.99728 * 14 12 9 36 36 H 0.97005 * 119.99717 * 180.02562 * 18 17 15 37 37 H 1.08996 * 110.37226 * 85.26996 * 23 7 5 38 38 H 1.08994 * 110.37138 * 322.94043 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6272 0.5354 -0.0006 5 6 4.9076 1.2842 -0.0003 6 8 4.9009 2.4991 0.0000 7 7 6.0785 0.6167 -0.0005 8 6 7.4145 1.2303 -0.0008 9 6 8.4459 0.0827 0.0258 10 1 8.7953 -0.1489 -0.9804 11 6 9.6230 0.4337 0.9380 12 6 7.6324 -1.1021 0.6107 13 1 7.5987 -1.0533 1.6990 14 7 8.1777 -2.3856 0.1621 15 6 7.9782 -3.5139 0.9119 16 1 7.4185 -3.4576 1.8338 17 6 8.4953 -4.7301 0.4871 18 7 9.1769 -4.7988 -0.6368 19 14 8.2164 -6.2706 1.5061 20 1 9.3267 -6.4278 2.4796 21 1 6.9294 -6.1541 2.2376 22 1 8.1715 -7.4548 0.6111 23 6 6.2317 -0.8495 -0.0015 24 7 3.4761 -0.7657 -0.0066 25 8 2.3073 -1.0750 -0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5137 29 1 2.0302 2.1272 0.0005 30 1 7.5347 1.8573 0.8827 31 1 7.5497 1.8294 -0.9014 32 1 10.2795 -0.4312 1.0331 33 1 10.1796 1.2668 0.5088 34 1 9.2486 0.7156 1.9222 35 1 8.6800 -2.4363 -0.6662 36 1 9.5380 -5.6487 -0.9338 37 1 6.1876 -1.2349 -1.0200 38 1 5.4600 -1.3120 0.6138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054360920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:32 Heat of formation + Delta-G solvation = 22.874363 kcal Electronic energy + Delta-G solvation = -21809.451185 eV Core-core repulsion = 18461.972929 eV Total energy + Delta-G solvation = -3347.478257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.17932 -41.23855 -39.09330 -35.97266 -35.23443 -34.57903 -33.69319 -32.52714 -29.28731 -28.71640 -28.10390 -26.00924 -25.15653 -23.81026 -22.74113 -21.41698 -20.34402 -19.20083 -18.96850 -18.38475 -18.00525 -17.36001 -16.89462 -16.34499 -15.68766 -15.42998 -15.02331 -14.66369 -14.58175 -14.50150 -14.34622 -14.11210 -13.94649 -13.43766 -13.27146 -13.10734 -12.92242 -12.86572 -12.39027 -12.22908 -12.18345 -12.05432 -11.75978 -11.62036 -11.56576 -11.42050 -10.96965 -10.41238 -9.89744 -9.08956 -7.97195 -5.27433 0.01804 0.64795 1.47773 1.48850 1.56984 1.59711 1.93504 2.09900 2.53965 2.77521 3.30065 3.34624 3.60900 3.73575 3.86499 3.91819 4.04764 4.11495 4.26472 4.30561 4.40396 4.55619 4.59822 4.77638 4.81116 4.82049 4.84293 4.88722 5.03449 5.06016 5.10120 5.25091 5.28610 5.41890 5.50727 6.16949 6.23602 6.69137 7.06500 7.31299 8.00210 8.26213 9.25519 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.005294 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.355133 B = 5287.575637 C = 6919.557021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.018 4.018 3 C -0.196 4.196 4 C -0.051 4.051 5 C 0.604 3.396 6 O -0.557 6.557 7 N -0.599 5.599 8 C 0.118 3.882 9 C -0.104 4.104 10 H 0.081 0.919 11 C -0.127 4.127 12 C 0.172 3.828 13 H 0.065 0.935 14 N -0.717 5.717 15 C -0.246 4.246 16 H 0.074 0.926 17 C -0.065 4.065 18 N -0.965 5.965 19 Si 0.969 3.031 20 H -0.285 1.285 21 H -0.272 1.272 22 H -0.295 1.295 23 C 0.089 3.911 24 N -0.350 5.350 25 O 0.119 5.881 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.199 0.801 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.378 0.622 36 H 0.252 0.748 37 H 0.052 0.948 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.924 12.631 1.733 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.219 4.219 4 C -0.208 4.208 5 C 0.391 3.609 6 O -0.436 6.436 7 N -0.331 5.331 8 C -0.004 4.004 9 C -0.124 4.124 10 H 0.100 0.900 11 C -0.185 4.185 12 C 0.061 3.939 13 H 0.083 0.917 14 N -0.355 5.355 15 C -0.377 4.377 16 H 0.092 0.908 17 C -0.258 4.258 18 N -0.615 5.615 19 Si 0.798 3.202 20 H -0.212 1.212 21 H -0.197 1.197 22 H -0.222 1.222 23 C -0.037 4.037 24 N -0.050 5.050 25 O 0.042 5.958 26 H 0.127 0.873 27 H 0.118 0.882 28 H 0.135 0.865 29 H 0.216 0.784 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.210 0.790 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.089 12.188 1.866 18.723 hybrid contribution 0.049 -0.467 -0.112 0.483 sum -14.041 11.721 1.755 18.374 Atomic orbital electron populations 1.20680 0.79510 1.06638 1.05990 1.25403 0.98300 0.83996 1.00399 1.22672 0.88260 1.02834 1.08090 1.23507 0.97095 0.90568 1.09657 1.16794 0.81448 0.85691 0.76935 1.90730 1.86964 1.12963 1.52902 1.48401 1.05810 1.08865 1.70064 1.22163 0.79403 0.95699 1.03110 1.22460 0.95406 0.93481 1.01045 0.90026 1.21616 0.96421 1.01701 0.98738 1.21515 0.89844 0.85610 0.96905 0.91695 1.42344 1.63430 1.03176 1.26593 1.19569 1.27722 0.87311 1.03118 0.90775 1.25490 1.00931 1.00621 0.98753 1.69806 1.42085 1.25556 1.24020 0.85208 0.77993 0.79319 0.77647 1.21204 1.19675 1.22202 1.23311 1.01536 0.77835 1.01001 1.74451 0.97988 1.15933 1.16665 1.84800 1.10984 1.34676 1.65295 0.87327 0.88231 0.86542 0.78432 0.89869 0.90330 0.93203 0.90368 0.91988 0.78960 0.93888 0.92952 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 71.24 0.74 0.24 16 2 C -0.02 -0.34 7.47 25.01 0.19 -0.15 16 3 C -0.20 -4.55 10.92 22.60 0.25 -4.30 16 4 C -0.05 -1.64 7.02 42.96 0.30 -1.34 16 5 C 0.60 21.56 7.88 86.93 0.68 22.25 16 6 O -0.56 -21.21 17.28 -3.72 -0.06 -21.27 16 7 N -0.60 -21.02 3.33 -814.62 -2.71 -23.73 16 8 C 0.12 3.55 6.46 86.73 0.56 4.11 16 9 C -0.10 -3.31 3.20 -9.60 -0.03 -3.35 16 10 H 0.08 2.69 8.00 -2.39 -0.02 2.67 16 11 C -0.13 -3.51 9.16 71.98 0.66 -2.85 16 12 C 0.17 6.83 3.16 46.40 0.15 6.97 16 13 H 0.07 2.62 8.00 -2.39 -0.02 2.60 16 14 N -0.72 -35.24 5.24 -316.33 -1.66 -36.90 16 15 C -0.25 -13.37 9.96 84.03 0.84 -12.54 16 16 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 17 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 18 N -0.96 -57.87 13.06 21.65 0.28 -57.58 16 19 Si 0.97 45.60 29.55 68.60 2.03 47.63 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 23 C 0.09 3.46 5.87 86.86 0.51 3.97 16 24 N -0.35 -11.67 9.31 -49.51 -0.46 -12.13 16 25 O 0.12 3.20 11.18 71.86 0.80 4.01 16 26 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 27 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.20 3.61 8.06 -2.91 -0.02 3.58 16 30 H 0.08 2.31 7.76 -2.39 -0.02 2.29 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.59 8.06 -2.38 -0.02 1.57 16 35 H 0.38 19.84 7.76 -92.71 -0.72 19.12 16 36 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 37 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 38 H 0.07 3.01 6.24 -2.39 -0.01 2.99 16 Total: -1.00 -69.72 324.32 3.89 -65.83 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.36 Total: 24.32 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.31 Total: 9.82 kcal Atomic # 7 Polarization: -125.79 SS G_CDS: -4.55 Total: -130.34 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.74 Total: -17.26 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -69.72 3.89 -65.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054360920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.707 kcal (2) G-P(sol) polarization free energy of solvation -69.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds