Wall clock time and date at job start Tue Mar 31 2020 01:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41263 * 126.70570 * 2 1 4 4 C 1.36818 * 103.84425 * 179.89260 * 3 2 1 5 5 C 1.47518 * 126.94044 * 180.15069 * 4 3 2 6 6 O 1.21582 * 120.00010 * 0.28185 * 5 4 3 7 7 N 1.34781 * 119.99660 * 180.28090 * 5 4 3 8 8 C 1.47431 * 125.64515 * 180.02562 * 7 5 4 9 9 C 1.54910 * 104.82957 * 204.09383 * 8 7 5 10 10 H 1.09000 * 111.00305 * 81.06287 * 9 8 7 11 11 C 1.52995 * 111.00293 * 204.91312 * 9 8 7 12 12 C 1.55158 * 101.58062 * 322.99072 * 9 8 7 13 13 H 1.09005 * 110.71873 * 153.86848 * 12 9 8 14 14 N 1.46497 * 110.71706 * 276.96070 * 12 9 8 15 15 C 1.36939 * 120.00179 * 204.99965 * 14 12 9 16 16 H 1.08005 * 119.99658 * 0.02562 * 15 14 12 17 17 C 1.38804 * 120.00530 * 180.02562 * 15 14 12 18 18 N 1.31623 * 119.99928 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00342 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46956 * 90.00136 * 19 17 15 21 21 H 1.48498 * 109.47023 * 210.00014 * 19 17 15 22 22 H 1.48496 * 109.47174 * 330.00450 * 19 17 15 23 23 C 1.47018 * 125.65349 * 359.69639 * 7 5 4 24 24 O 1.34640 * 106.11699 * 0.36532 * 4 3 2 25 25 N 1.20888 * 111.46499 * 359.75455 * 24 4 3 26 26 H 1.09002 * 109.47152 * 269.70952 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.71053 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.71034 * 1 2 3 29 29 H 1.08004 * 128.07441 * 0.02562 * 3 2 1 30 30 H 1.09002 * 110.36062 * 322.92643 * 8 7 5 31 31 H 1.08991 * 110.36408 * 85.25315 * 8 7 5 32 32 H 1.09000 * 109.46959 * 58.55119 * 11 9 8 33 33 H 1.09002 * 109.47228 * 178.54523 * 11 9 8 34 34 H 1.08995 * 109.47620 * 298.54882 * 11 9 8 35 35 H 0.96996 * 120.00455 * 25.00348 * 14 12 9 36 36 H 0.96995 * 119.99953 * 179.97438 * 18 17 15 37 37 H 1.09011 * 109.87854 * 298.39466 * 23 7 5 38 38 H 1.09005 * 109.88376 * 59.55186 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3514 1.1325 0.0000 4 6 3.6121 0.6010 0.0025 5 6 4.8870 1.3430 0.0067 6 8 4.8828 2.5588 0.0134 7 7 6.0566 0.6731 0.0030 8 6 7.3976 1.2856 0.0070 9 6 8.3264 0.2105 -0.6104 10 1 8.2667 0.2211 -1.6987 11 6 9.7703 0.3981 -0.1407 12 6 7.7187 -1.0950 -0.0328 13 1 7.9292 -1.9409 -0.6873 14 7 8.2251 -1.3489 1.3182 15 6 8.2525 -2.6265 1.8103 16 1 7.9010 -3.4470 1.2022 17 6 8.7318 -2.8671 3.0906 18 7 9.1596 -1.8672 3.8318 19 14 8.7697 -4.6101 3.7616 20 1 10.0704 -5.2421 3.4242 21 1 8.6037 -4.5762 5.2369 22 1 7.6653 -5.3974 3.1570 23 6 6.2064 -0.7895 0.0013 24 8 3.4540 -0.7361 -0.0045 25 7 2.2848 -1.0433 -0.0058 26 1 -0.3633 -0.0052 1.0277 27 1 -0.3633 -0.8874 -0.5183 28 1 -0.3633 0.8926 -0.5093 29 1 2.0678 2.1747 0.0004 30 1 7.4040 2.1885 -0.6037 31 1 7.7072 1.5141 1.0268 32 1 9.8089 0.3403 0.9471 33 1 10.3962 -0.3851 -0.5685 34 1 10.1346 1.3725 -0.4659 35 1 8.5410 -0.6121 1.8642 36 1 9.4942 -2.0352 4.7266 37 1 5.7615 -1.2087 0.9038 38 1 5.7251 -1.2104 -0.8816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054377213.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:00 Heat of formation + Delta-G solvation = 44.404897 kcal Electronic energy + Delta-G solvation = -22049.793536 eV Core-core repulsion = 18703.248913 eV Total energy + Delta-G solvation = -3346.544623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.98372 -39.85636 -37.75778 -34.97529 -34.01984 -32.66982 -31.74760 -30.50477 -28.82943 -27.82806 -26.61020 -24.04418 -23.48116 -22.85863 -21.58968 -19.43533 -19.34347 -17.81231 -17.71750 -17.24124 -16.18529 -15.93860 -15.35723 -14.68328 -14.39152 -13.89337 -13.74543 -13.56186 -13.37563 -13.18028 -13.07655 -12.88805 -12.71405 -12.20231 -11.98722 -11.62382 -11.43159 -11.14595 -10.94495 -10.78249 -10.48392 -10.29280 -10.21270 -10.16919 -9.95893 -9.73101 -9.66389 -9.04002 -8.43213 -7.09526 -5.85321 -3.15576 0.84239 1.99204 2.64190 3.09064 3.25570 3.39879 3.46151 3.47191 3.99208 4.33520 4.52260 4.74321 4.96985 5.01902 5.12361 5.22724 5.26270 5.29950 5.46162 5.51158 5.55520 5.62426 5.73628 5.85161 5.90922 5.93262 6.12808 6.23484 6.27782 6.36212 6.44190 6.52332 6.72376 6.92700 7.57155 7.64160 7.94120 8.16700 8.32444 9.44642 9.97780 10.32563 11.36718 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016065 B = 0.005347 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.510198 B = 5235.445918 C = 6503.059652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.005 3.995 3 C -0.162 4.162 4 C -0.066 4.066 5 C 0.611 3.389 6 O -0.529 6.529 7 N -0.590 5.590 8 C 0.115 3.885 9 C -0.115 4.115 10 H 0.080 0.920 11 C -0.132 4.132 12 C 0.173 3.827 13 H 0.077 0.923 14 N -0.710 5.710 15 C -0.247 4.247 16 H 0.073 0.927 17 C -0.007 4.007 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.066 3.934 24 O 0.126 5.874 25 N -0.349 5.349 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.181 0.819 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.387 0.613 36 H 0.256 0.744 37 H 0.084 0.916 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.471 5.816 -10.089 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.153 4.153 3 C -0.185 4.185 4 C -0.132 4.132 5 C 0.396 3.604 6 O -0.407 6.407 7 N -0.321 5.321 8 C -0.007 4.007 9 C -0.136 4.136 10 H 0.098 0.902 11 C -0.190 4.190 12 C 0.061 3.939 13 H 0.095 0.905 14 N -0.351 5.351 15 C -0.378 4.378 16 H 0.091 0.909 17 C -0.204 4.204 18 N -0.577 5.577 19 Si 0.737 3.263 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C -0.060 4.060 24 O 0.053 5.947 25 N -0.050 5.050 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.199 0.801 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.223 0.777 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.757 4.978 -10.016 15.519 hybrid contribution -0.089 0.024 0.741 0.746 sum -10.846 5.003 -9.276 15.123 Atomic orbital electron populations 1.20176 0.85445 1.03881 1.03600 1.23624 0.99282 0.88438 1.03937 1.22789 0.89934 1.01566 1.04171 1.24243 0.97221 0.83977 1.07762 1.16149 0.80424 0.85581 0.78211 1.90833 1.85870 1.11678 1.52348 1.48367 1.05170 1.09281 1.69284 1.22391 0.80162 0.96396 1.01748 1.22672 0.95541 0.95736 0.99603 0.90154 1.21563 0.93823 1.00288 1.03311 1.21206 0.88589 0.94841 0.89310 0.90528 1.42461 1.74264 1.07211 1.11181 1.19249 1.35879 0.85167 0.97510 0.90878 1.24738 1.01366 0.97343 0.96916 1.69653 1.47977 1.29700 1.10376 0.86205 0.77748 0.84169 0.78142 1.21629 1.21810 1.20641 1.23533 1.02591 0.77804 1.02079 1.85115 1.20996 1.22139 1.66408 1.73756 0.89517 1.24456 1.17263 0.89985 0.90376 0.89864 0.80143 0.90716 0.90563 0.90736 0.92193 0.93631 0.77749 0.93370 0.89767 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.47 36.01 0.38 -0.23 16 2 C 0.00 0.06 7.31 -82.16 -0.60 -0.54 16 3 C -0.16 -2.12 10.91 -38.95 -0.43 -2.54 16 4 C -0.07 -1.02 7.08 -36.31 -0.26 -1.28 16 5 C 0.61 10.44 7.85 -12.48 -0.10 10.34 16 6 O -0.53 -9.95 17.17 5.29 0.09 -9.86 16 7 N -0.59 -9.87 3.33 -171.75 -0.57 -10.44 16 8 C 0.11 1.80 6.34 -2.53 -0.02 1.78 16 9 C -0.12 -1.72 3.52 -88.47 -0.31 -2.03 16 10 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 11 C -0.13 -1.99 8.98 37.16 0.33 -1.65 16 12 C 0.17 3.10 3.39 -66.10 -0.22 2.87 16 13 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 14 N -0.71 -16.17 4.46 -51.65 -0.23 -16.40 16 15 C -0.25 -6.39 9.96 -15.06 -0.15 -6.54 16 16 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 17 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 18 N -0.93 -26.87 13.06 55.49 0.72 -26.15 16 19 Si 0.91 21.67 29.55 -169.99 -5.02 16.64 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.07 1.12 5.32 -3.07 -0.02 1.10 16 24 O 0.13 2.03 9.02 15.56 0.14 2.17 16 25 N -0.35 -5.36 12.04 33.52 0.40 -4.95 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.18 1.93 8.06 -52.48 -0.42 1.50 16 30 H 0.07 1.08 8.04 -51.93 -0.42 0.67 16 31 H 0.08 1.29 8.03 -51.93 -0.42 0.88 16 32 H 0.07 1.33 6.26 -51.93 -0.33 1.01 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.39 9.44 6.24 -40.82 -0.25 9.18 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.08 1.65 7.75 -51.92 -0.40 1.25 16 38 H 0.06 0.95 7.71 -51.93 -0.40 0.55 16 LS Contribution 321.76 15.07 4.85 4.85 Total: -1.00 -30.29 321.76 -6.24 -36.53 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.14 Total: 6.61 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.48 Total: 0.99 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.33 Total: -57.94 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.23 Total: -7.69 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.29 -6.24 -36.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054377213.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.934 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds