Wall clock time and date at job start Tue Mar 31 2020 02:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34255 * 126.52455 * 2 1 4 4 C 1.34055 * 108.22648 * 179.97438 * 3 2 1 5 5 N 1.29935 * 109.23845 * 359.72792 * 4 3 2 6 6 C 1.36059 * 108.48230 * 0.44066 * 5 4 3 7 7 C 1.47423 * 126.45242 * 179.82252 * 6 5 4 8 8 O 1.21613 * 119.99863 * 179.68754 * 7 6 5 9 9 N 1.34774 * 119.99917 * 359.69551 * 7 6 5 10 10 C 1.47019 * 125.64849 * 180.02562 * 9 7 6 11 11 C 1.54321 * 107.27083 * 181.01749 * 10 9 7 12 12 H 1.09000 * 110.72236 * 263.82588 * 11 10 9 13 13 C 1.53005 * 110.71931 * 140.55515 * 11 10 9 14 14 C 1.55158 * 102.94397 * 22.19579 * 11 10 9 15 15 H 1.09004 * 111.03663 * 206.40994 * 14 11 10 16 16 N 1.46499 * 111.00762 * 82.56892 * 14 11 10 17 17 C 1.36935 * 119.99938 * 161.35405 * 16 14 11 18 18 H 1.07999 * 120.00083 * 0.02562 * 17 16 14 19 19 C 1.38812 * 119.99632 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99535 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 0.27829 * 19 17 16 22 22 H 1.48501 * 109.46922 * 269.71949 * 21 19 17 23 23 H 1.48496 * 109.47354 * 29.72145 * 21 19 17 24 24 H 1.48501 * 109.47428 * 149.72253 * 21 19 17 25 25 C 1.47420 * 125.64646 * 359.96731 * 9 7 6 26 26 H 1.09003 * 109.46804 * 270.02044 * 1 2 3 27 27 H 1.09005 * 109.47388 * 30.01371 * 1 2 3 28 28 H 1.08995 * 109.47610 * 150.01581 * 1 2 3 29 29 H 1.07997 * 125.38030 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.88573 * 300.43694 * 10 9 7 31 31 H 1.08999 * 109.88316 * 61.44664 * 10 9 7 32 32 H 1.08998 * 109.47111 * 306.47612 * 13 11 10 33 33 H 1.09001 * 109.46747 * 66.47992 * 13 11 10 34 34 H 1.08995 * 109.47092 * 186.47768 * 13 11 10 35 35 H 0.97004 * 119.99469 * 341.35473 * 16 14 11 36 36 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 37 37 H 1.09001 * 110.36939 * 37.07637 * 25 9 7 38 38 H 1.08999 * 110.46508 * 274.79368 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6580 0.0006 5 7 3.6001 -0.6412 0.0067 6 6 2.3170 -1.0936 0.0004 7 6 1.8853 -2.5032 0.0005 8 8 0.7002 -2.7762 0.0001 9 7 2.8040 -3.4894 0.0011 10 6 2.5139 -4.9306 0.0006 11 6 3.8679 -5.6705 0.0278 12 1 4.1722 -5.9551 -0.9795 13 6 3.7965 -6.8968 0.9400 14 6 4.8337 -4.6065 0.6131 15 1 5.8568 -4.7814 0.2802 16 7 4.7582 -4.5768 2.0758 17 6 5.7694 -4.0066 2.8021 18 1 6.6223 -3.5784 2.2966 19 6 5.6975 -3.9781 4.1881 20 7 6.6697 -3.4304 4.8863 21 14 4.2253 -4.7244 5.0627 22 1 3.1774 -3.6873 5.2408 23 1 3.6820 -5.8428 4.2509 24 1 4.6461 -5.2362 6.3917 25 6 4.2661 -3.3014 0.0010 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8899 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 4.4489 1.2977 0.0011 30 1 1.9310 -5.1918 0.8839 31 1 1.9611 -5.1973 -0.9002 32 1 3.4358 -6.5972 1.9239 33 1 3.1138 -7.6299 0.5103 34 1 4.7891 -7.3369 1.0354 35 1 3.9919 -4.9612 2.5298 36 1 6.6197 -3.4108 5.8548 37 1 4.5384 -2.4440 0.6166 38 1 4.6333 -3.1687 -1.0167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054459085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:48 Heat of formation + Delta-G solvation = 13.454858 kcal Electronic energy + Delta-G solvation = -22522.072899 eV Core-core repulsion = 19174.186182 eV Total energy + Delta-G solvation = -3347.886717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.35420 -39.70260 -37.65480 -34.80368 -33.92056 -32.39375 -32.32258 -30.78898 -28.16206 -27.68658 -26.10104 -23.89393 -23.30279 -21.99204 -21.46543 -19.48766 -19.36633 -17.86675 -17.28140 -16.85542 -16.21019 -15.89284 -15.17137 -14.68117 -14.49594 -14.18334 -13.88289 -13.52546 -13.16335 -13.14666 -12.75612 -12.63790 -12.44065 -12.31523 -12.05298 -11.68845 -11.45015 -11.23238 -11.02431 -10.85094 -10.59174 -10.43825 -10.16935 -9.93865 -9.84539 -9.56193 -9.01347 -8.88566 -8.22404 -7.27003 -5.78861 -3.13951 1.17193 2.19417 2.60706 3.24426 3.35368 3.39885 3.44721 3.52660 4.14366 4.57725 4.64757 4.72382 4.99061 5.13268 5.16612 5.18757 5.39806 5.40606 5.44397 5.57509 5.70715 5.79559 5.84741 5.89725 5.98068 6.09071 6.11011 6.19510 6.24605 6.31670 6.55843 6.59173 6.71394 6.95080 7.54436 7.83660 7.97311 8.37336 8.40718 9.18196 9.90961 10.10186 11.39240 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015463 B = 0.006661 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.357252 B = 4202.783587 C = 4956.577150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.032 3.968 3 O -0.203 6.203 4 C 0.170 3.830 5 N -0.447 5.447 6 C -0.064 4.064 7 C 0.612 3.388 8 O -0.553 6.553 9 N -0.587 5.587 10 C 0.115 3.885 11 C -0.116 4.116 12 H 0.085 0.915 13 C -0.134 4.134 14 C 0.174 3.826 15 H 0.079 0.921 16 N -0.735 5.735 17 C -0.241 4.241 18 H 0.093 0.907 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.878 3.122 22 H -0.286 1.286 23 H -0.276 1.276 24 H -0.290 1.290 25 C 0.073 3.927 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.254 0.746 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.363 0.637 36 H 0.259 0.741 37 H 0.109 0.891 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.841 4.119 -12.971 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.024 4.024 3 O -0.090 6.090 4 C -0.059 4.059 5 N -0.175 5.175 6 C -0.184 4.184 7 C 0.401 3.599 8 O -0.433 6.433 9 N -0.318 5.318 10 C -0.007 4.007 11 C -0.136 4.136 12 H 0.104 0.896 13 C -0.192 4.192 14 C 0.063 3.937 15 H 0.097 0.903 16 N -0.377 5.377 17 C -0.371 4.371 18 H 0.111 0.889 19 C -0.188 4.188 20 N -0.579 5.579 21 Si 0.709 3.291 22 H -0.213 1.213 23 H -0.203 1.203 24 H -0.217 1.217 25 C -0.052 4.052 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.129 0.871 29 H 0.270 0.730 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.197 0.803 36 H 0.069 0.931 37 H 0.127 0.873 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.729 3.757 -12.857 15.988 hybrid contribution -1.268 0.149 0.864 1.541 sum -9.997 3.906 -11.993 16.094 Atomic orbital electron populations 1.20540 0.82840 1.05012 1.04565 1.23648 0.95071 0.83470 1.00246 1.84347 1.18728 1.36258 1.69684 1.28121 0.85046 0.91543 1.01141 1.70940 1.21403 1.09605 1.15562 1.21393 0.88886 0.95319 1.12810 1.16320 0.84473 0.82219 0.76934 1.90731 1.16033 1.83278 1.53249 1.48108 1.08141 1.05546 1.69975 1.22003 0.97516 0.79724 1.01454 1.22546 0.94799 0.96097 1.00155 0.89636 1.21641 1.02140 0.96001 0.99398 1.21394 0.96814 0.90477 0.85037 0.90333 1.42717 1.23882 1.70930 1.00197 1.19048 0.98874 1.30171 0.88987 0.88944 1.24619 0.97392 1.00653 0.96098 1.69695 1.32607 1.49735 1.05891 0.86662 0.83573 0.79328 0.79568 1.21275 1.20269 1.21664 1.23573 0.77672 1.03449 1.00525 0.89200 0.90408 0.87135 0.73001 0.91638 0.91864 0.92161 0.93317 0.91660 0.80315 0.93096 0.87306 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 9.88 36.00 0.36 -0.46 16 2 C 0.03 0.46 7.44 -35.08 -0.26 0.20 16 3 O -0.20 -2.63 10.73 6.50 0.07 -2.56 16 4 C 0.17 2.11 13.19 51.96 0.69 2.79 16 5 N -0.45 -7.34 8.44 -11.48 -0.10 -7.43 16 6 C -0.06 -1.10 6.81 -83.02 -0.57 -1.67 16 7 C 0.61 11.51 7.85 -12.52 -0.10 11.41 16 8 O -0.55 -10.82 15.13 5.27 0.08 -10.74 16 9 N -0.59 -10.66 3.33 -171.79 -0.57 -11.23 16 10 C 0.12 1.86 6.46 -3.07 -0.02 1.84 16 11 C -0.12 -1.75 3.42 -88.78 -0.30 -2.05 16 12 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 13 C -0.13 -1.99 8.71 37.16 0.32 -1.67 16 14 C 0.17 3.22 3.44 -65.77 -0.23 2.99 16 15 H 0.08 1.42 8.13 -51.93 -0.42 1.00 16 16 N -0.73 -16.89 4.54 -51.34 -0.23 -17.12 16 17 C -0.24 -6.60 10.47 -15.06 -0.16 -6.76 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 20 N -0.93 -28.97 13.97 55.49 0.78 -28.19 16 21 Si 0.88 22.40 27.74 -169.99 -4.71 17.69 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 23 H -0.28 -6.59 6.52 56.52 0.37 -6.23 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 C 0.07 1.32 5.84 -2.52 -0.01 1.30 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.11 1.35 6.48 -51.93 -0.34 1.01 16 29 H 0.25 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.07 1.13 7.76 -51.93 -0.40 0.72 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.04 6.35 -51.93 -0.33 0.71 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.36 8.47 3.94 -40.82 -0.16 8.31 16 36 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 37 H 0.11 2.27 6.14 -51.93 -0.32 1.95 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 313.83 15.07 4.73 4.73 Total: -1.00 -33.98 313.83 -5.29 -39.27 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.94 Total: 7.51 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.38 Total: 8.08 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: -0.13 Total: -63.98 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.15 Total: -13.30 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.98 -5.29 -39.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054459085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.722 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds