Wall clock time and date at job start Tue Mar 31 2020 02:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33694 * 126.27521 * 2 1 4 4 C 1.30617 * 108.99660 * 180.25240 * 3 2 1 5 5 O 1.33666 * 109.15373 * 359.76814 * 4 3 2 6 6 C 1.35345 * 107.68499 * 359.97438 * 5 4 3 7 7 C 1.46718 * 126.64243 * 179.97438 * 6 5 4 8 8 O 1.21689 * 119.99794 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00325 * 0.02562 * 7 6 5 10 10 C 1.47018 * 125.64993 * 180.02562 * 9 7 6 11 11 C 1.54325 * 107.40412 * 178.90064 * 10 9 7 12 12 H 1.09000 * 110.72188 * 96.24097 * 11 10 9 13 13 C 1.52995 * 110.72304 * 219.52316 * 11 10 9 14 14 C 1.55405 * 102.82616 * 337.97548 * 11 10 9 15 15 H 1.09000 * 111.06973 * 153.48376 * 14 11 10 16 16 N 1.46495 * 110.89523 * 277.26785 * 14 11 10 17 17 C 1.36938 * 120.00233 * 198.69197 * 16 14 11 18 18 H 1.07997 * 119.99937 * 359.97438 * 17 16 14 19 19 C 1.38819 * 119.99806 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00215 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99717 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47209 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47127 * 119.99634 * 21 19 17 24 24 H 1.48504 * 109.47096 * 239.99634 * 21 19 17 25 25 C 1.47426 * 125.64489 * 0.04332 * 9 7 6 26 26 H 1.08996 * 109.47340 * 270.14052 * 1 2 3 27 27 H 1.09002 * 109.46868 * 30.13951 * 1 2 3 28 28 H 1.08998 * 109.47054 * 150.13421 * 1 2 3 29 29 H 1.08002 * 125.42258 * 179.74798 * 4 3 2 30 30 H 1.09002 * 109.88241 * 298.39592 * 10 9 7 31 31 H 1.09000 * 109.88049 * 59.40721 * 10 9 7 32 32 H 1.08999 * 109.47083 * 58.54334 * 13 11 10 33 33 H 1.09002 * 109.47293 * 178.54343 * 13 11 10 34 34 H 1.09000 * 109.47062 * 298.54438 * 13 11 10 35 35 H 0.97004 * 120.00040 * 18.68107 * 16 14 11 36 36 H 0.96993 * 119.99981 * 180.02562 * 20 19 17 37 37 H 1.08999 * 110.36956 * 322.93474 * 25 9 7 38 38 H 1.09001 * 110.36709 * 85.14667 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 -0.0054 5 8 3.5890 -0.6461 -0.0040 6 6 2.3136 -1.0992 0.0032 7 6 1.8827 -2.5017 0.0067 8 8 0.6966 -2.7737 0.0128 9 7 2.8004 -3.4887 0.0032 10 6 2.5089 -4.9297 0.0055 11 6 3.8603 -5.6741 -0.0285 12 1 4.1683 -5.9604 0.9772 13 6 3.7808 -6.8993 -0.9413 14 6 4.8266 -4.6082 -0.6161 15 1 5.8508 -4.7839 -0.2871 16 7 4.7455 -4.5792 -2.0785 17 6 5.7544 -4.0105 -2.8091 18 1 6.6098 -3.5829 -2.3072 19 6 5.6777 -3.9835 -4.1950 20 7 4.6355 -4.5050 -4.8067 21 14 7.0537 -3.2071 -5.1915 22 1 8.1027 -2.6962 -4.2729 23 1 7.6425 -4.2244 -6.0990 24 1 6.5095 -2.0828 -5.9948 25 6 4.2628 -3.3022 -0.0033 26 1 -0.3634 0.0025 1.0276 27 1 -0.3633 0.8888 -0.5160 28 1 -0.3633 -0.8912 -0.5117 29 1 4.4043 1.3443 -0.0107 30 1 1.9617 -5.1958 0.9099 31 1 1.9200 -5.1902 -0.8740 32 1 3.5024 -6.5853 -1.9473 33 1 4.7515 -7.3942 -0.9707 34 1 3.0317 -7.5912 -0.5563 35 1 3.9771 -4.9630 -2.5294 36 1 4.5822 -4.4865 -5.7750 37 1 4.5332 -2.4456 -0.6208 38 1 4.6326 -3.1679 1.0133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054526373.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:53 Heat of formation + Delta-G solvation = 6.789878 kcal Electronic energy + Delta-G solvation = -22493.185832 eV Core-core repulsion = 19145.010100 eV Total energy + Delta-G solvation = -3348.175732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.32397 -39.70322 -37.67941 -35.25287 -33.91224 -32.50298 -31.46231 -30.53050 -28.20871 -27.70812 -26.04713 -24.03195 -23.51048 -22.02069 -21.39256 -19.69066 -19.31981 -17.70476 -17.04036 -16.82167 -16.45016 -15.87977 -15.28110 -14.65662 -14.54266 -14.12419 -13.80318 -13.23012 -13.17031 -12.99266 -12.94273 -12.65054 -12.25401 -12.13225 -12.01274 -11.59045 -11.17307 -11.02461 -10.97996 -10.86737 -10.74734 -10.50100 -10.29757 -10.01475 -9.88290 -9.69451 -9.10157 -8.89989 -8.29796 -7.07953 -5.87116 -3.17094 0.96784 2.49906 2.58681 3.26597 3.33501 3.36478 3.41778 3.44663 4.09195 4.48936 4.65818 4.81234 5.00259 5.10407 5.25982 5.45176 5.49870 5.58306 5.59180 5.70884 5.71558 5.86117 5.90009 5.90751 6.00429 6.13641 6.16983 6.29891 6.31578 6.35802 6.49322 6.51382 6.70796 6.88373 7.55702 7.60662 7.73585 8.23072 8.30570 9.42540 9.97223 10.31752 11.35021 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014431 B = 0.006621 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.747245 B = 4227.634184 C = 5409.284342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.067 3.933 3 N -0.497 5.497 4 C 0.193 3.807 5 O -0.179 6.179 6 C -0.095 4.095 7 C 0.618 3.382 8 O -0.530 6.530 9 N -0.590 5.590 10 C 0.117 3.883 11 C -0.113 4.113 12 H 0.081 0.919 13 C -0.134 4.134 14 C 0.172 3.828 15 H 0.073 0.927 16 N -0.709 5.709 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.008 4.008 20 N -0.928 5.928 21 Si 0.906 3.094 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.066 3.934 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.253 0.747 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.387 0.613 36 H 0.256 0.744 37 H 0.088 0.912 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.313 3.837 12.247 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.057 4.057 3 N -0.226 5.226 4 C -0.032 4.032 5 O -0.064 6.064 6 C -0.150 4.150 7 C 0.405 3.595 8 O -0.409 6.409 9 N -0.320 5.320 10 C -0.005 4.005 11 C -0.133 4.133 12 H 0.099 0.901 13 C -0.191 4.191 14 C 0.059 3.941 15 H 0.091 0.909 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.205 4.205 20 N -0.575 5.575 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.059 4.059 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.269 0.731 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.223 0.777 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.948 4.378 12.146 13.243 hybrid contribution 1.001 -0.018 -0.829 1.300 sum -1.946 4.360 11.317 12.283 Atomic orbital electron populations 1.20337 0.85534 1.04266 1.03317 1.21980 0.98261 0.86407 0.99010 1.70306 1.01367 1.31500 1.19462 1.28275 0.97485 0.80008 0.97439 1.84669 1.29486 1.23849 1.68349 1.22881 0.81384 0.96109 1.14672 1.15930 0.84830 0.81002 0.77701 1.90815 1.15445 1.81881 1.52809 1.48180 1.07695 1.06144 1.70002 1.22021 0.97764 0.78938 1.01750 1.22548 0.94567 0.96233 0.99909 0.90051 1.21623 1.01511 0.95701 1.00307 1.21406 0.96395 0.89865 0.86430 0.90923 1.42416 1.24408 1.69799 0.98412 1.19251 0.98878 1.30900 0.88692 0.90958 1.24755 0.97876 1.01268 0.96583 1.69663 1.29454 1.49982 1.08420 0.86144 0.81279 0.78586 0.80291 1.20468 1.21761 1.21899 1.23591 0.78451 1.03884 1.00010 0.90361 0.90704 0.88697 0.73102 0.91840 0.90988 0.90938 0.92151 0.93518 0.77694 0.93402 0.89330 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 9.87 36.00 0.36 -0.70 16 2 C 0.07 1.09 7.16 -82.47 -0.59 0.50 16 3 N -0.50 -7.49 11.26 -10.88 -0.12 -7.61 16 4 C 0.19 2.46 13.21 52.25 0.69 3.15 16 5 O -0.18 -2.80 8.07 4.41 0.04 -2.76 16 6 C -0.10 -1.65 6.96 -36.84 -0.26 -1.91 16 7 C 0.62 11.56 7.82 -12.84 -0.10 11.46 16 8 O -0.53 -10.55 15.12 5.20 0.08 -10.47 16 9 N -0.59 -10.46 3.33 -172.05 -0.57 -11.03 16 10 C 0.12 1.89 6.45 -3.07 -0.02 1.87 16 11 C -0.11 -1.68 3.43 -88.65 -0.30 -1.99 16 12 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 13 C -0.13 -2.03 8.81 37.15 0.33 -1.70 16 14 C 0.17 3.09 3.45 -65.66 -0.23 2.86 16 15 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 16 N -0.71 -16.43 4.72 -51.23 -0.24 -16.67 16 17 C -0.25 -6.40 9.98 -15.06 -0.15 -6.55 16 18 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 21 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C 0.07 1.14 5.88 -2.54 -0.01 1.12 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 1.41 6.47 -51.93 -0.34 1.08 16 29 H 0.25 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.27 7.82 -51.93 -0.41 0.86 16 32 H 0.07 1.33 6.21 -51.93 -0.32 1.00 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.39 9.75 6.01 -40.82 -0.25 9.50 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 37 H 0.09 1.71 6.25 -51.93 -0.32 1.39 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 317.03 15.07 4.78 4.78 Total: -1.00 -31.89 317.03 -5.71 -37.60 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -4.98 Total: 8.21 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -0.39 Total: 7.78 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.21 Total: -61.78 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.11 Total: -13.23 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.89 -5.71 -37.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054526373.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.390 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds