Wall clock time and date at job start Tue Mar 31 2020 02:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33694 * 126.27521 * 2 1 4 4 C 1.30617 * 108.99660 * 180.25240 * 3 2 1 5 5 O 1.33666 * 109.15373 * 359.76814 * 4 3 2 6 6 C 1.35345 * 107.68499 * 359.97438 * 5 4 3 7 7 C 1.46718 * 126.64243 * 179.97438 * 6 5 4 8 8 O 1.21689 * 119.99794 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00325 * 0.02562 * 7 6 5 10 10 C 1.47018 * 125.64993 * 180.02562 * 9 7 6 11 11 C 1.54325 * 107.40412 * 178.90064 * 10 9 7 12 12 H 1.09000 * 110.72188 * 96.24097 * 11 10 9 13 13 C 1.52995 * 110.72304 * 219.52316 * 11 10 9 14 14 C 1.55405 * 102.82616 * 337.97548 * 11 10 9 15 15 H 1.09000 * 111.06973 * 153.48376 * 14 11 10 16 16 N 1.46495 * 110.89523 * 277.26785 * 14 11 10 17 17 C 1.36938 * 120.00233 * 198.69197 * 16 14 11 18 18 H 1.07997 * 119.99937 * 359.97438 * 17 16 14 19 19 C 1.38819 * 119.99806 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00215 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99717 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47209 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47127 * 119.99634 * 21 19 17 24 24 H 1.48504 * 109.47096 * 239.99634 * 21 19 17 25 25 C 1.47426 * 125.64489 * 0.04332 * 9 7 6 26 26 H 1.08996 * 109.47340 * 270.14052 * 1 2 3 27 27 H 1.09002 * 109.46868 * 30.13951 * 1 2 3 28 28 H 1.08998 * 109.47054 * 150.13421 * 1 2 3 29 29 H 1.08002 * 125.42258 * 179.74798 * 4 3 2 30 30 H 1.09002 * 109.88241 * 298.39592 * 10 9 7 31 31 H 1.09000 * 109.88049 * 59.40721 * 10 9 7 32 32 H 1.08999 * 109.47083 * 58.54334 * 13 11 10 33 33 H 1.09002 * 109.47293 * 178.54343 * 13 11 10 34 34 H 1.09000 * 109.47062 * 298.54438 * 13 11 10 35 35 H 0.97004 * 120.00040 * 18.68107 * 16 14 11 36 36 H 0.96993 * 119.99981 * 180.02562 * 20 19 17 37 37 H 1.08999 * 110.36956 * 322.93474 * 25 9 7 38 38 H 1.09001 * 110.36709 * 85.14667 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 -0.0054 5 8 3.5890 -0.6461 -0.0040 6 6 2.3136 -1.0992 0.0032 7 6 1.8827 -2.5017 0.0067 8 8 0.6966 -2.7737 0.0128 9 7 2.8004 -3.4887 0.0032 10 6 2.5089 -4.9297 0.0055 11 6 3.8603 -5.6741 -0.0285 12 1 4.1683 -5.9604 0.9772 13 6 3.7808 -6.8993 -0.9413 14 6 4.8266 -4.6082 -0.6161 15 1 5.8508 -4.7839 -0.2871 16 7 4.7455 -4.5792 -2.0785 17 6 5.7544 -4.0105 -2.8091 18 1 6.6098 -3.5829 -2.3072 19 6 5.6777 -3.9835 -4.1950 20 7 4.6355 -4.5050 -4.8067 21 14 7.0537 -3.2071 -5.1915 22 1 8.1027 -2.6962 -4.2729 23 1 7.6425 -4.2244 -6.0990 24 1 6.5095 -2.0828 -5.9948 25 6 4.2628 -3.3022 -0.0033 26 1 -0.3634 0.0025 1.0276 27 1 -0.3633 0.8888 -0.5160 28 1 -0.3633 -0.8912 -0.5117 29 1 4.4043 1.3443 -0.0107 30 1 1.9617 -5.1958 0.9099 31 1 1.9200 -5.1902 -0.8740 32 1 3.5024 -6.5853 -1.9473 33 1 4.7515 -7.3942 -0.9707 34 1 3.0317 -7.5912 -0.5563 35 1 3.9771 -4.9630 -2.5294 36 1 4.5822 -4.4865 -5.7750 37 1 4.5332 -2.4456 -0.6208 38 1 4.6326 -3.1679 1.0133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054526373.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:52 Heat of formation + Delta-G solvation = -17.098615 kcal Electronic energy + Delta-G solvation = -22494.221715 eV Core-core repulsion = 19145.010100 eV Total energy + Delta-G solvation = -3349.211615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.47474 -41.07798 -39.09987 -36.44175 -35.64831 -33.98214 -32.68540 -32.20226 -29.55980 -29.13041 -27.28060 -25.85300 -24.78450 -23.32985 -22.62896 -20.98715 -20.69403 -19.45147 -18.46198 -18.03667 -17.66510 -17.27382 -16.64487 -16.41294 -15.80144 -15.56017 -15.41760 -14.66897 -14.47412 -14.35177 -14.21581 -13.92604 -13.63799 -13.45429 -13.24015 -13.02350 -12.90778 -12.84408 -12.30999 -12.15568 -12.10633 -12.03816 -11.92511 -11.49611 -11.40455 -11.22161 -11.00752 -10.16647 -9.67138 -8.97547 -7.93643 -5.21490 -0.24065 1.35631 1.42544 1.47144 1.47784 1.57175 1.94526 2.05430 2.55969 3.11670 3.36874 3.39826 3.65781 3.74806 3.86576 3.91644 4.08294 4.35812 4.41340 4.42569 4.62070 4.65526 4.65658 4.72393 4.78906 4.84703 4.91906 4.97812 5.04064 5.17801 5.21134 5.28479 5.37070 5.53695 5.59839 6.27733 6.28249 6.49284 6.85722 7.35082 8.10369 8.32241 9.29985 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014431 B = 0.006621 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.747245 B = 4227.634184 C = 5409.284342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.068 3.932 3 N -0.520 5.520 4 C 0.218 3.782 5 O -0.189 6.189 6 C -0.132 4.132 7 C 0.609 3.391 8 O -0.554 6.554 9 N -0.595 5.595 10 C 0.115 3.885 11 C -0.097 4.097 12 H 0.122 0.878 13 C -0.128 4.128 14 C 0.159 3.841 15 H 0.088 0.912 16 N -0.722 5.722 17 C -0.231 4.231 18 H 0.084 0.916 19 C -0.076 4.076 20 N -0.971 5.971 21 Si 0.966 3.034 22 H -0.259 1.259 23 H -0.297 1.297 24 H -0.303 1.303 25 C 0.077 3.923 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.306 0.694 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.033 0.967 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.374 0.626 36 H 0.247 0.753 37 H 0.066 0.934 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.852 4.675 14.358 15.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.055 4.055 3 N -0.249 5.249 4 C -0.006 4.006 5 O -0.075 6.075 6 C -0.187 4.187 7 C 0.398 3.602 8 O -0.436 6.436 9 N -0.325 5.325 10 C -0.007 4.007 11 C -0.116 4.116 12 H 0.140 0.860 13 C -0.186 4.186 14 C 0.049 3.951 15 H 0.106 0.894 16 N -0.361 5.361 17 C -0.363 4.363 18 H 0.102 0.898 19 C -0.268 4.268 20 N -0.622 5.622 21 Si 0.796 3.204 22 H -0.183 1.183 23 H -0.224 1.224 24 H -0.231 1.231 25 C -0.048 4.048 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.321 0.679 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.207 0.793 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.457 5.221 14.324 15.316 hybrid contribution 0.565 -0.209 -1.382 1.507 sum -0.892 5.013 12.943 13.908 Atomic orbital electron populations 1.20373 0.84498 1.04123 1.04296 1.22370 0.99244 0.86509 0.97414 1.70362 1.02285 1.31159 1.21100 1.29567 0.98346 0.79372 0.93332 1.84654 1.28774 1.25170 1.68893 1.22681 0.82333 0.95779 1.17869 1.16198 0.84757 0.81847 0.77419 1.90782 1.16264 1.82532 1.54051 1.48303 1.07878 1.06610 1.69716 1.22125 0.98484 0.78444 1.01664 1.22549 0.92747 0.94833 1.01472 0.85993 1.21553 1.02313 0.96375 0.98380 1.21727 0.98097 0.91574 0.83696 0.89434 1.42594 1.23308 1.69536 1.00691 1.19679 0.99132 1.28529 0.88944 0.89831 1.25499 1.00114 1.03180 0.97987 1.69829 1.31716 1.52732 1.07876 0.85174 0.79244 0.77113 0.78860 1.18324 1.22432 1.23082 1.23443 0.78099 1.02034 1.01224 0.88758 0.89159 0.90374 0.67943 0.89666 0.93471 0.94815 0.91992 0.90869 0.79274 0.94377 0.91609 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.05 9.87 71.23 0.70 -1.34 16 2 C 0.07 2.15 7.16 41.83 0.30 2.45 16 3 N -0.52 -14.68 11.26 -303.12 -3.41 -18.10 16 4 C 0.22 4.95 13.21 130.42 1.72 6.67 16 5 O -0.19 -5.62 8.07 -7.12 -0.06 -5.68 16 6 C -0.13 -4.51 6.96 24.05 0.17 -4.34 16 7 C 0.61 22.90 7.82 86.46 0.68 23.58 16 8 O -0.55 -22.53 15.12 -4.31 -0.07 -22.60 16 9 N -0.60 -20.68 3.33 -816.47 -2.72 -23.39 16 10 C 0.11 3.57 6.45 86.73 0.56 4.13 16 11 C -0.10 -2.66 3.43 -9.52 -0.03 -2.69 16 12 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 13 C -0.13 -3.75 8.81 71.98 0.63 -3.12 16 14 C 0.16 5.45 3.45 46.47 0.16 5.61 16 15 H 0.09 2.77 8.13 -2.39 -0.02 2.75 16 16 N -0.72 -33.42 4.72 -315.99 -1.49 -34.92 16 17 C -0.23 -11.92 9.98 84.04 0.84 -11.08 16 18 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 19 C -0.08 -4.20 5.50 84.86 0.47 -3.73 16 20 N -0.97 -58.70 13.06 21.65 0.28 -58.42 16 21 Si 0.97 44.88 29.55 68.60 2.03 46.91 16 22 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 25 C 0.08 2.49 5.88 86.85 0.51 3.01 16 26 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.08 2.38 6.47 -2.39 -0.02 2.37 16 29 H 0.31 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 1.69 7.82 -2.39 -0.02 1.67 16 32 H 0.03 1.25 6.21 -2.39 -0.01 1.24 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.37 19.36 6.01 -92.71 -0.56 18.80 16 36 H 0.25 14.70 8.31 -92.71 -0.77 13.92 16 37 H 0.07 2.46 6.25 -2.39 -0.01 2.45 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -71.30 317.03 1.80 -69.50 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.53 Total: 27.55 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 6.71 Total: 19.14 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -7.34 Total: -134.82 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.12 Total: -28.28 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -71.30 1.80 -69.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054526373.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.400 kcal (2) G-P(sol) polarization free energy of solvation -71.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds