Wall clock time and date at job start Tue Mar 31 2020 02:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29934 * 125.38062 * 2 1 4 4 C 1.36071 * 108.47679 * 180.16454 * 3 2 1 5 5 C 1.47416 * 126.44644 * 179.82916 * 4 3 2 6 6 O 1.21614 * 119.99986 * 179.68885 * 5 4 3 7 7 N 1.34782 * 119.99878 * 359.68577 * 5 4 3 8 8 C 1.47425 * 125.64189 * 180.02562 * 7 5 4 9 9 C 1.54918 * 104.82827 * 204.10422 * 8 7 5 10 10 H 1.09000 * 110.99891 * 81.06585 * 9 8 7 11 11 C 1.52996 * 111.00284 * 204.91696 * 9 8 7 12 12 C 1.55157 * 101.58155 * 322.99497 * 9 8 7 13 13 H 1.08996 * 110.71539 * 153.86247 * 12 9 8 14 14 N 1.46501 * 110.71889 * 276.95791 * 12 9 8 15 15 C 1.36936 * 119.99547 * 205.00490 * 14 12 9 16 16 H 1.07995 * 120.00374 * 359.97438 * 15 14 12 17 17 C 1.38814 * 119.99522 * 179.97438 * 15 14 12 18 18 N 1.31622 * 120.00020 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99940 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47313 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47177 * 120.00201 * 19 17 15 22 22 H 1.48502 * 109.47260 * 239.99726 * 19 17 15 23 23 C 1.47015 * 125.64929 * 359.97438 * 7 5 4 24 24 C 1.36088 * 107.10024 * 359.56080 * 4 3 2 25 25 O 1.34049 * 125.37560 * 179.67875 * 2 1 3 26 26 H 1.08997 * 109.47247 * 180.29214 * 1 2 3 27 27 H 1.08989 * 109.46986 * 300.29691 * 1 2 3 28 28 H 1.09002 * 109.46706 * 60.29532 * 1 2 3 29 29 H 1.08999 * 110.36633 * 85.27695 * 8 7 5 30 30 H 1.08996 * 110.37033 * 322.94075 * 8 7 5 31 31 H 1.08999 * 109.46952 * 172.20072 * 11 9 8 32 32 H 1.08996 * 109.47229 * 292.19900 * 11 9 8 33 33 H 1.09000 * 109.47156 * 52.20321 * 11 9 8 34 34 H 0.97003 * 119.99871 * 25.00129 * 14 12 9 35 35 H 0.97008 * 119.99637 * 179.97438 * 18 17 15 36 36 H 1.09000 * 109.88350 * 59.54436 * 23 7 5 37 37 H 1.08997 * 110.01690 * 298.44952 * 23 7 5 38 38 H 1.07998 * 126.52165 * 180.23808 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2594 1.0594 0.0000 4 6 3.5613 0.6637 -0.0037 5 6 4.7440 1.5437 -0.0085 6 8 5.8606 1.0617 -0.0058 7 7 4.5879 2.8824 -0.0160 8 6 5.6784 3.8745 -0.0221 9 6 5.0520 5.1559 0.5826 10 1 5.0329 5.1051 1.6712 11 6 5.7946 6.4062 0.1070 12 6 3.6156 5.1061 -0.0018 13 1 2.9174 5.6370 0.6452 14 7 3.5879 5.6613 -1.3573 15 6 2.4264 6.1851 -1.8590 16 1 1.5307 6.1884 -1.2557 17 6 2.4004 6.7116 -3.1431 18 7 3.4922 6.7080 -3.8782 19 14 0.8158 7.4255 -3.8278 20 1 -0.2593 7.3108 -2.8099 21 1 1.0238 8.8559 -4.1685 22 1 0.4233 6.6779 -5.0495 23 6 3.3020 3.5951 -0.0206 24 6 3.5660 -0.6971 0.0040 25 8 2.2831 -1.0930 0.0061 26 1 -0.3633 -1.0276 0.0052 27 1 -0.3633 0.5184 0.8872 28 1 -0.3633 0.5093 -0.8927 29 1 6.0152 4.0618 -1.0416 30 1 6.5080 3.5301 0.5954 31 1 5.2541 7.2953 0.4320 32 1 6.7985 6.4160 0.5314 33 1 5.8600 6.3982 -0.9810 34 1 4.3924 5.6580 -1.8993 35 1 3.4738 7.0757 -4.7757 36 1 2.7255 3.3253 0.8642 37 1 2.7397 3.3443 -0.9200 38 1 4.4361 -1.3368 0.0072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054589440.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:25 Heat of formation + Delta-G solvation = -17.177371 kcal Electronic energy + Delta-G solvation = -22094.320143 eV Core-core repulsion = 18745.105113 eV Total energy + Delta-G solvation = -3349.215030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.44863 -41.08029 -39.04096 -36.04644 -35.65356 -33.88356 -33.09004 -32.21003 -29.36962 -28.88986 -27.77283 -25.80063 -24.85353 -23.23182 -22.50962 -20.77404 -20.59482 -19.46597 -18.58494 -17.98120 -17.60123 -17.24475 -16.54909 -16.39752 -15.85327 -15.41910 -15.06735 -14.83982 -14.64365 -14.47028 -14.14067 -13.90717 -13.55813 -13.37269 -13.27709 -13.04248 -12.87669 -12.80461 -12.37498 -12.28950 -12.10471 -12.02582 -11.69716 -11.48286 -11.44898 -11.30730 -10.92856 -10.11594 -9.64522 -9.00194 -7.91477 -5.19564 0.03870 0.96613 1.49479 1.49784 1.58244 1.59721 1.91330 2.17110 2.58378 2.87777 3.39873 3.43676 3.75639 3.79219 3.90638 3.94289 4.08223 4.40249 4.42108 4.53590 4.58225 4.67141 4.67599 4.72514 4.74550 4.81630 4.89838 5.01977 5.03522 5.19693 5.25263 5.28270 5.36575 5.55205 5.60629 6.29874 6.37775 6.49968 6.95448 7.37137 8.10621 8.34598 9.32204 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.005807 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.011287 B = 4820.249556 C = 6181.332534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.197 3.803 3 N -0.486 5.486 4 C -0.100 4.100 5 C 0.603 3.397 6 O -0.577 6.577 7 N -0.595 5.595 8 C 0.114 3.886 9 C -0.100 4.100 10 H 0.109 0.891 11 C -0.122 4.122 12 C 0.159 3.841 13 H 0.082 0.918 14 N -0.720 5.720 15 C -0.232 4.232 16 H 0.081 0.919 17 C -0.075 4.075 18 N -0.971 5.971 19 Si 0.968 3.032 20 H -0.262 1.262 21 H -0.296 1.296 22 H -0.300 1.300 23 C 0.107 3.893 24 C 0.027 3.973 25 O -0.194 6.194 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.374 0.626 35 H 0.248 0.752 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 -13.010 12.063 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.012 4.012 3 N -0.216 5.216 4 C -0.219 4.219 5 C 0.392 3.608 6 O -0.459 6.459 7 N -0.325 5.325 8 C -0.008 4.008 9 C -0.120 4.120 10 H 0.127 0.873 11 C -0.180 4.180 12 C 0.049 3.951 13 H 0.100 0.900 14 N -0.360 5.360 15 C -0.364 4.364 16 H 0.099 0.901 17 C -0.267 4.267 18 N -0.622 5.622 19 Si 0.798 3.202 20 H -0.186 1.186 21 H -0.223 1.223 22 H -0.228 1.228 23 C -0.018 4.018 24 C -0.048 4.048 25 O -0.080 6.080 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.121 0.879 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.208 0.792 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -3.633 -12.625 12.064 17.837 hybrid contribution 0.053 -0.167 -1.228 1.240 sum -3.581 -12.792 10.836 17.143 Atomic orbital electron populations 1.20584 0.77680 1.06805 1.06217 1.27365 0.98170 0.77611 0.98066 1.70938 1.00856 1.31005 1.18839 1.21644 0.91963 0.93784 1.14460 1.16757 0.86659 0.80898 0.76473 1.90746 1.25475 1.75270 1.54417 1.48315 1.10102 1.04359 1.69716 1.22352 0.90068 0.87865 1.00536 1.22621 0.94855 0.93584 1.00891 0.87259 1.21447 0.99842 0.96087 1.00607 1.21541 0.96124 0.90391 0.87045 0.89981 1.42566 1.10425 1.70478 1.12523 1.19686 0.90337 1.29321 0.97026 0.90108 1.25498 0.99984 1.03489 0.97734 1.69834 1.28623 1.53392 1.10351 0.85135 0.79938 0.77109 0.77972 1.18607 1.22320 1.22790 1.22903 0.83828 0.93890 1.01195 1.25680 0.85700 0.94777 0.98595 1.84420 1.16409 1.37939 1.69248 0.86517 0.86916 0.87905 0.93179 0.89665 0.92347 0.90830 0.94379 0.79229 0.94280 0.90725 0.93278 0.72650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.71 10.51 71.24 0.75 0.04 16 2 C 0.20 4.59 8.30 88.39 0.73 5.32 16 3 N -0.49 -15.11 8.84 -293.03 -2.59 -17.70 16 4 C -0.10 -3.22 6.83 40.40 0.28 -2.95 16 5 C 0.60 22.57 7.85 86.66 0.68 23.25 16 6 O -0.58 -23.24 17.15 -4.07 -0.07 -23.31 16 7 N -0.59 -22.10 3.33 -815.66 -2.71 -24.81 16 8 C 0.11 3.92 6.34 86.86 0.55 4.47 16 9 C -0.10 -3.12 3.51 -9.40 -0.03 -3.15 16 10 H 0.11 2.81 8.14 -2.39 -0.02 2.80 16 11 C -0.12 -3.84 8.84 71.98 0.64 -3.20 16 12 C 0.16 6.05 3.38 46.18 0.16 6.21 16 13 H 0.08 2.97 8.09 -2.39 -0.02 2.95 16 14 N -0.72 -34.86 4.51 -317.33 -1.43 -36.29 16 15 C -0.23 -12.38 9.96 84.03 0.84 -11.55 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 17 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 18 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 19 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 22 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 23 C 0.11 4.02 5.27 86.73 0.46 4.47 16 24 C 0.03 0.65 11.95 67.32 0.80 1.46 16 25 O -0.19 -4.31 10.73 0.38 0.00 -4.31 16 26 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.94 7.98 -2.39 -0.02 1.92 16 30 H 0.09 2.68 8.04 -2.39 -0.02 2.66 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.04 1.44 6.48 -2.39 -0.02 1.43 16 34 H 0.37 19.84 6.31 -92.71 -0.58 19.26 16 35 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 36 H 0.07 2.57 7.63 -2.39 -0.02 2.56 16 37 H 0.05 2.18 7.66 -2.39 -0.02 2.16 16 38 H 0.26 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -71.95 321.95 2.32 -69.63 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.49 Total: 27.47 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 6.31 Total: 20.60 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -6.45 Total: -137.64 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.07 Total: -27.61 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.95 2.32 -69.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054589440.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.451 kcal (2) G-P(sol) polarization free energy of solvation -71.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds