Wall clock time and date at job start Tue Mar 31 2020 01:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35312 * 126.66522 * 2 1 4 4 C 1.42276 * 103.91787 * 180.08792 * 3 2 1 5 5 C 1.48335 * 126.93534 * 179.91193 * 4 3 2 6 6 O 1.21492 * 119.99901 * 359.70806 * 5 4 3 7 7 N 1.34773 * 119.99879 * 179.70901 * 5 4 3 8 8 C 1.46495 * 120.00003 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.88987 * 34.30196 * 8 7 5 10 10 C 1.54912 * 111.03972 * 270.39228 * 8 7 5 11 11 N 1.47425 * 104.83413 * 204.90377 * 10 8 7 12 12 C 1.36937 * 125.64625 * 204.08190 * 11 10 8 13 13 H 1.08006 * 119.99619 * 169.99485 * 12 11 10 14 14 C 1.38806 * 120.00229 * 349.99622 * 12 11 10 15 15 N 1.31624 * 119.99978 * 350.42308 * 14 12 11 16 16 Si 1.86802 * 120.00018 * 170.41598 * 14 12 11 17 17 H 1.48504 * 109.46659 * 94.14247 * 16 14 12 18 18 H 1.48502 * 109.47095 * 214.14003 * 16 14 12 19 19 H 1.48496 * 109.47202 * 334.14216 * 16 14 12 20 20 C 1.47019 * 108.70408 * 24.12791 * 11 10 8 21 21 C 1.54325 * 107.27403 * 358.94276 * 20 11 10 22 22 H 1.08993 * 110.87592 * 96.23801 * 21 20 11 23 23 C 1.53001 * 110.72350 * 219.44846 * 21 20 11 24 24 N 1.30985 * 106.12368 * 359.64354 * 4 3 2 25 25 O 1.20898 * 111.44093 * 0.23249 * 24 4 3 26 26 H 1.08997 * 109.46804 * 180.28493 * 1 2 3 27 27 H 1.09000 * 109.46834 * 300.29014 * 1 2 3 28 28 H 1.09003 * 109.46895 * 60.28692 * 1 2 3 29 29 H 1.07997 * 128.04482 * 359.96160 * 3 2 1 30 30 H 0.97003 * 119.99870 * 359.97438 * 7 5 4 31 31 H 1.08997 * 110.36440 * 323.74053 * 10 8 7 32 32 H 1.09000 * 110.36183 * 86.05871 * 10 8 7 33 33 H 0.96999 * 119.99945 * 180.02562 * 15 14 12 34 34 H 1.09006 * 109.88197 * 239.52637 * 20 11 10 35 35 H 1.09002 * 109.88270 * 118.35609 * 20 11 10 36 36 H 1.08992 * 109.47422 * 173.52251 * 23 21 20 37 37 H 1.09007 * 109.46812 * 293.51718 * 23 21 20 38 38 H 1.08997 * 109.47535 * 53.51394 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6272 0.5353 -0.0021 5 6 4.9077 1.2840 -0.0048 6 8 4.9009 2.4989 -0.0108 7 7 6.0785 0.6166 -0.0007 8 6 7.3432 1.3561 -0.0040 9 1 7.2537 2.2815 0.5650 10 6 7.8190 1.6377 -1.4510 11 7 9.2807 1.7970 -1.3434 12 6 10.0743 2.4908 -2.2175 13 1 11.1071 2.6871 -1.9698 14 6 9.5516 2.9417 -3.4217 15 7 8.3579 2.5460 -3.8102 16 14 10.5420 4.1103 -4.4907 17 1 11.3048 3.3320 -5.4995 18 1 9.6221 5.0490 -5.1819 19 1 11.4865 4.8787 -3.6406 20 6 9.7452 1.0867 -0.1430 21 6 8.5018 0.4788 0.5397 22 1 8.3676 -0.5623 0.2463 23 6 8.6054 0.6013 2.0613 24 7 3.4761 -0.7658 0.0047 25 8 2.3073 -1.0750 0.0059 26 1 -0.3633 -1.0276 0.0051 27 1 -0.3633 0.5183 0.8874 28 1 -0.3633 0.5094 -0.8926 29 1 2.0303 2.1271 -0.0006 30 1 6.0839 -0.3534 0.0044 31 1 7.5758 0.7970 -2.1007 32 1 7.3643 2.5537 -1.8283 33 1 7.9927 2.8608 -4.6519 34 1 10.2357 1.7855 0.5347 35 1 10.4375 0.2937 -0.4261 36 1 7.6714 0.2725 2.5167 37 1 9.4241 -0.0220 2.4211 38 1 8.7947 1.6405 2.3302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079387448.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:47 Heat of formation + Delta-G solvation = 48.574571 kcal Electronic energy + Delta-G solvation = -21715.957809 eV Core-core repulsion = 18369.593997 eV Total energy + Delta-G solvation = -3346.363812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -45.14021 -39.52697 -37.55153 -34.20509 -34.08562 -33.38920 -32.52187 -30.39188 -28.11345 -27.92739 -25.71608 -24.81480 -23.31818 -22.61222 -20.47651 -20.13004 -19.35183 -17.90768 -17.59243 -16.86668 -16.68861 -15.85061 -14.93164 -14.45840 -14.39349 -13.95382 -13.89703 -13.71268 -13.56380 -13.04874 -12.93064 -12.68670 -12.52151 -12.30571 -11.67656 -11.56314 -11.34082 -11.00464 -10.80707 -10.69367 -10.49157 -10.38968 -9.98983 -9.96674 -9.87904 -9.72534 -9.54974 -8.61794 -8.52436 -6.79871 -5.71877 -3.06034 1.10006 1.62324 2.82361 3.17296 3.38383 3.42365 3.47725 3.50365 3.99023 4.42368 4.52739 4.81940 5.00154 5.05386 5.08300 5.20548 5.29584 5.37601 5.42549 5.52255 5.55247 5.73833 5.81848 5.93552 6.01064 6.13287 6.18428 6.36200 6.43710 6.67594 6.70627 6.92627 7.40612 7.59358 7.70968 7.81234 7.98716 8.26250 8.37878 9.19818 9.82513 10.48433 11.40696 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.004360 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.917196 B = 6420.747598 C = 7367.452516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.040 4.040 3 C -0.184 4.184 4 C -0.015 4.015 5 C 0.594 3.406 6 O -0.518 6.518 7 N -0.695 5.695 8 C 0.116 3.884 9 H 0.095 0.905 10 C 0.170 3.830 11 N -0.601 5.601 12 C -0.233 4.233 13 H 0.078 0.922 14 C -0.006 4.006 15 N -0.916 5.916 16 Si 0.912 3.088 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.142 3.858 21 C -0.110 4.110 22 H 0.076 0.924 23 C -0.138 4.138 24 N -0.334 5.334 25 O 0.118 5.882 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.180 0.820 30 H 0.401 0.599 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.253 0.747 34 H 0.029 0.971 35 H 0.025 0.975 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.292 -7.238 10.596 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C -0.206 4.206 4 C -0.175 4.175 5 C 0.377 3.623 6 O -0.392 6.392 7 N -0.345 5.345 8 C 0.011 3.989 9 H 0.113 0.887 10 C 0.044 3.956 11 N -0.328 5.328 12 C -0.361 4.361 13 H 0.096 0.904 14 C -0.203 4.203 15 N -0.562 5.562 16 Si 0.742 3.258 17 H -0.216 1.216 18 H -0.216 1.216 19 H -0.205 1.205 20 C 0.015 3.985 21 C -0.130 4.130 22 H 0.094 0.906 23 C -0.195 4.195 24 N -0.036 5.036 25 O 0.043 5.957 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.198 0.802 30 H 0.236 0.764 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.362 -7.227 10.391 18.405 hybrid contribution 0.159 0.777 -0.749 1.091 sum -13.203 -6.450 9.642 17.575 Atomic orbital electron populations 1.20351 0.83511 1.04746 1.04332 1.24473 0.96493 0.85557 1.03757 1.22450 0.89830 1.01590 1.06757 1.23672 0.97101 0.89986 1.06709 1.16834 0.81529 0.86464 0.77459 1.90818 1.86516 1.12394 1.49502 1.45749 1.05365 1.10308 1.73091 1.22787 0.80105 0.94573 1.01394 0.88735 1.21682 0.84092 1.01196 0.88625 1.44354 1.02731 1.59909 1.25811 1.19010 0.93850 1.27032 0.96189 0.90424 1.24851 0.97314 1.01007 0.97082 1.69958 1.17205 1.46626 1.22429 0.86118 0.78841 0.80594 0.80281 1.21609 1.21577 1.20517 1.21353 0.93424 0.94306 0.89381 1.22424 0.96155 0.99238 0.95157 0.90596 1.21749 1.00998 1.01964 0.94818 1.74154 0.97100 1.15755 1.16624 1.84767 1.11192 1.33478 1.66270 0.89758 0.89031 0.88958 0.80231 0.76415 0.95316 0.90693 0.93655 0.95323 0.95671 0.93134 0.92677 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.45 36.01 0.38 0.03 16 2 C -0.04 -0.39 7.47 -35.35 -0.26 -0.65 16 3 C -0.18 -2.27 10.92 -39.07 -0.43 -2.70 16 4 C -0.02 -0.24 7.19 -82.52 -0.59 -0.83 16 5 C 0.59 11.02 7.85 -12.11 -0.10 10.92 16 6 O -0.52 -11.27 16.64 5.37 0.09 -11.18 16 7 N -0.70 -12.30 5.21 -52.51 -0.27 -12.57 16 8 C 0.12 2.32 2.82 -65.78 -0.19 2.14 16 9 H 0.09 2.02 7.54 -51.93 -0.39 1.62 16 10 C 0.17 4.33 5.12 -2.53 -0.01 4.32 16 11 N -0.60 -15.83 3.39 -170.07 -0.58 -16.41 16 12 C -0.23 -6.66 10.24 -15.06 -0.15 -6.81 16 13 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 14 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 15 N -0.92 -27.91 10.68 55.49 0.59 -27.32 16 16 Si 0.91 22.62 29.56 -169.99 -5.03 17.60 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.14 2.98 6.84 -3.07 -0.02 2.95 16 21 C -0.11 -1.91 3.19 -88.78 -0.28 -2.20 16 22 H 0.08 1.24 7.99 -51.93 -0.42 0.82 16 23 C -0.14 -1.94 9.16 37.16 0.34 -1.60 16 24 N -0.33 -4.82 11.84 33.29 0.39 -4.42 16 25 O 0.12 1.40 11.18 17.24 0.19 1.60 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.18 1.95 8.06 -52.49 -0.42 1.52 16 30 H 0.40 6.26 8.30 -40.82 -0.34 5.92 16 31 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.07 2.21 6.94 -51.93 -0.36 1.84 16 33 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.03 0.59 7.77 -51.93 -0.40 0.18 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -34.15 324.20 -6.39 -40.54 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.25 Total: 1.96 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -1.41 Total: 5.32 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.14 Total: -60.72 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.28 Total: -9.59 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.15 -6.39 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079387448.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.112 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds