Wall clock time and date at job start Tue Mar 31 2020 01:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41266 * 126.70776 * 2 1 4 4 C 1.36822 * 103.84751 * 180.02562 * 3 2 1 5 5 C 1.47511 * 126.94028 * 180.02562 * 4 3 2 6 6 O 1.21581 * 120.00179 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99745 * 180.27697 * 5 4 3 8 8 C 1.46496 * 119.99942 * 179.72431 * 7 5 4 9 9 H 1.09007 * 110.89017 * 34.29598 * 8 7 5 10 10 C 1.54907 * 111.00636 * 270.41397 * 8 7 5 11 11 N 1.47462 * 104.81805 * 204.95188 * 10 8 7 12 12 C 1.36936 * 125.63620 * 204.14166 * 11 10 8 13 13 H 1.07997 * 120.00759 * 161.42287 * 12 11 10 14 14 C 1.38818 * 119.99215 * 341.41944 * 12 11 10 15 15 N 1.31623 * 119.99520 * 157.64317 * 14 12 11 16 16 Si 1.86797 * 120.00183 * 337.65065 * 14 12 11 17 17 H 1.48497 * 109.47358 * 84.53683 * 16 14 12 18 18 H 1.48510 * 109.46802 * 204.53517 * 16 14 12 19 19 H 1.48497 * 109.47361 * 324.52951 * 16 14 12 20 20 C 1.47026 * 108.71917 * 24.06406 * 11 10 8 21 21 C 1.54327 * 107.27057 * 358.98038 * 20 11 10 22 22 H 1.09005 * 110.87151 * 96.24027 * 21 20 11 23 23 C 1.53003 * 110.71849 * 219.43775 * 21 20 11 24 24 O 1.34640 * 106.11444 * 0.25970 * 4 3 2 25 25 N 1.20894 * 111.46751 * 359.52830 * 24 4 3 26 26 H 1.09006 * 109.46940 * 89.99708 * 1 2 3 27 27 H 1.08996 * 109.47713 * 210.00204 * 1 2 3 28 28 H 1.08998 * 109.47513 * 330.00607 * 1 2 3 29 29 H 1.08004 * 128.07101 * 0.05095 * 3 2 1 30 30 H 0.96998 * 119.99689 * 359.71901 * 7 5 4 31 31 H 1.09007 * 110.36554 * 323.75854 * 10 8 7 32 32 H 1.09001 * 110.36878 * 86.07199 * 10 8 7 33 33 H 0.97000 * 120.00050 * 179.97438 * 15 14 12 34 34 H 1.09003 * 109.88478 * 239.55752 * 20 11 10 35 35 H 1.09006 * 109.87758 * 118.39700 * 20 11 10 36 36 H 1.08996 * 109.47011 * 173.52404 * 23 21 20 37 37 H 1.08997 * 109.47490 * 293.52574 * 23 21 20 38 38 H 1.09000 * 109.46519 * 53.52557 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3514 1.1325 0.0000 4 6 3.6121 0.6010 -0.0006 5 6 4.8870 1.3430 -0.0003 6 8 4.8828 2.5588 0.0000 7 7 6.0566 0.6731 -0.0066 8 6 7.3227 1.4100 -0.0125 9 1 7.2383 2.3323 0.5624 10 6 7.7901 1.6993 -1.4607 11 7 9.2533 1.8537 -1.3610 12 6 10.0433 2.5517 -2.2350 13 1 11.0333 2.8637 -1.9371 14 6 9.5714 2.8581 -3.5041 15 7 10.0941 3.8622 -4.1758 16 14 8.1946 1.8457 -4.2583 17 1 6.8846 2.3652 -3.7903 18 1 8.2644 1.9405 -5.7387 19 1 8.3405 0.4267 -3.8459 20 6 9.7232 1.1359 -0.1671 21 6 8.4824 0.5272 0.5196 22 1 8.3441 -0.5121 0.2214 23 6 8.5953 0.6412 2.0412 24 8 3.4540 -0.7361 -0.0068 25 7 2.2847 -1.0433 -0.0005 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 2.0678 2.1747 0.0008 30 1 6.0598 -0.2969 -0.0072 31 1 7.5409 0.8630 -2.1140 32 1 7.3352 2.6186 -1.8297 33 1 9.7646 4.0761 -5.0627 34 1 10.2194 1.8299 0.5114 35 1 10.4120 0.3429 -0.4585 36 1 7.6632 0.3121 2.5004 37 1 9.4147 0.0142 2.3927 38 1 8.7885 1.6785 2.3144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079411939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:10 Heat of formation + Delta-G solvation = 27.667491 kcal Electronic energy + Delta-G solvation = -21877.307881 eV Core-core repulsion = 18530.037470 eV Total energy + Delta-G solvation = -3347.270411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.11196 -41.22500 -39.43406 -36.14881 -35.70430 -34.50458 -33.18028 -32.79426 -29.86997 -29.60464 -27.79590 -25.98306 -24.46597 -23.92356 -22.61699 -21.78884 -20.90144 -19.39689 -19.00024 -18.89489 -17.86869 -17.36931 -16.99335 -16.22281 -15.96693 -15.71811 -15.17300 -14.95212 -14.70871 -14.43631 -14.24005 -14.17236 -14.03488 -13.71645 -13.62365 -13.24166 -13.13673 -12.83351 -12.45787 -12.29985 -12.19838 -11.91975 -11.64066 -11.55736 -11.51129 -11.16798 -10.92319 -10.87745 -10.28976 -9.10270 -8.22888 -5.48924 -0.37702 0.94947 1.25330 1.30129 1.36605 1.39016 1.77042 2.01637 2.36304 2.99261 3.03442 3.27207 3.38736 3.50091 3.77027 3.81928 3.91989 3.96606 4.23320 4.32377 4.43902 4.55080 4.67488 4.70829 4.71449 4.78723 4.79748 4.90689 4.99841 5.08981 5.17084 5.17316 5.30150 5.48479 5.64290 6.06530 6.15481 6.70072 6.80147 6.95774 7.49026 8.04429 8.96894 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019787 B = 0.005018 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.754654 B = 5578.650242 C = 6466.250343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.017 3.983 3 C -0.148 4.148 4 C -0.090 4.090 5 C 0.605 3.395 6 O -0.544 6.544 7 N -0.689 5.689 8 C 0.147 3.853 9 H 0.096 0.904 10 C 0.100 3.900 11 N -0.625 5.625 12 C -0.233 4.233 13 H 0.068 0.932 14 C -0.033 4.033 15 N -0.952 5.952 16 Si 0.938 3.062 17 H -0.285 1.285 18 H -0.304 1.304 19 H -0.262 1.262 20 C 0.132 3.868 21 C -0.093 4.093 22 H 0.107 0.893 23 C -0.132 4.132 24 O 0.111 5.889 25 N -0.365 5.365 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.199 0.801 30 H 0.422 0.578 31 H 0.028 0.972 32 H 0.027 0.973 33 H 0.262 0.738 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.622 -11.768 13.670 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.141 4.141 3 C -0.170 4.170 4 C -0.156 4.156 5 C 0.389 3.611 6 O -0.422 6.422 7 N -0.340 5.340 8 C 0.041 3.959 9 H 0.114 0.886 10 C -0.026 4.026 11 N -0.352 5.352 12 C -0.362 4.362 13 H 0.086 0.914 14 C -0.228 4.228 15 N -0.599 5.599 16 Si 0.767 3.233 17 H -0.212 1.212 18 H -0.232 1.232 19 H -0.187 1.187 20 C 0.008 3.992 21 C -0.112 4.112 22 H 0.125 0.875 23 C -0.190 4.190 24 O 0.040 5.960 25 N -0.069 5.069 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.216 0.784 30 H 0.260 0.740 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.750 -12.104 13.506 25.377 hybrid contribution -0.193 0.478 -1.174 1.282 sum -17.943 -11.626 12.332 24.682 Atomic orbital electron populations 1.20425 0.82451 1.05568 1.04959 1.24252 1.01011 0.87313 1.01547 1.23233 0.89502 1.02858 1.01435 1.23999 0.96929 0.84415 1.10238 1.16736 0.81806 0.85936 0.76586 1.90896 1.86545 1.13476 1.51243 1.45670 1.04261 1.11343 1.72722 1.22132 0.82214 0.96420 0.95127 0.88622 1.22292 0.85317 0.98090 0.96906 1.44752 1.01615 1.60474 1.28380 1.18637 0.98831 1.26071 0.92653 0.91430 1.25579 1.00883 0.98995 0.97353 1.69956 1.47203 1.28463 1.14298 0.86071 0.79918 0.80810 0.76453 1.21239 1.23248 1.18738 1.21704 0.95776 0.94488 0.87239 1.22448 0.91698 0.99524 0.97519 0.87524 1.21725 1.03271 1.02504 0.91481 1.84960 1.21708 1.21683 1.67599 1.73724 0.89458 1.25159 1.18587 0.88629 0.89550 0.87480 0.78387 0.73967 0.95420 0.95433 0.92851 0.93991 0.93890 0.90940 0.90222 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.47 71.23 0.75 -0.01 16 2 C 0.02 0.31 7.31 43.55 0.32 0.62 16 3 C -0.15 -3.04 10.91 22.68 0.25 -2.79 16 4 C -0.09 -2.17 7.29 24.38 0.18 -1.99 16 5 C 0.61 17.64 7.82 86.69 0.68 18.32 16 6 O -0.54 -20.05 16.61 -3.97 -0.07 -20.11 16 7 N -0.69 -18.07 5.21 -439.16 -2.29 -20.35 16 8 C 0.15 4.72 2.81 46.38 0.13 4.85 16 9 H 0.10 3.34 7.54 -2.38 -0.02 3.33 16 10 C 0.10 4.39 4.39 86.85 0.38 4.77 16 11 N -0.63 -30.05 3.21 -691.86 -2.22 -32.27 16 12 C -0.23 -13.62 10.57 84.04 0.89 -12.73 16 13 H 0.07 4.21 8.06 -2.91 -0.02 4.18 16 14 C -0.03 -2.02 5.43 84.86 0.46 -1.56 16 15 N -0.95 -61.54 13.97 21.65 0.30 -61.24 16 16 Si 0.94 48.76 24.27 68.60 1.66 50.42 16 17 H -0.29 -14.72 6.49 99.48 0.65 -14.07 16 18 H -0.30 -15.81 7.11 99.48 0.71 -15.10 16 19 H -0.26 -12.83 6.66 99.48 0.66 -12.17 16 20 C 0.13 4.76 6.84 86.73 0.59 5.35 16 21 C -0.09 -2.41 3.19 -9.60 -0.03 -2.44 16 22 H 0.11 2.29 7.99 -2.38 -0.02 2.27 16 23 C -0.13 -2.57 9.16 71.98 0.66 -1.91 16 24 O 0.11 2.55 11.04 65.83 0.73 3.28 16 25 N -0.37 -8.30 12.04 -48.85 -0.59 -8.89 16 26 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.20 3.35 8.06 -2.91 -0.02 3.32 16 30 H 0.42 8.25 8.36 -92.71 -0.78 7.47 16 31 H 0.03 1.23 5.58 -2.38 -0.01 1.22 16 32 H 0.03 1.40 6.64 -2.39 -0.02 1.39 16 33 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 34 H 0.04 1.49 7.77 -2.39 -0.02 1.47 16 35 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.05 1.13 8.06 -2.39 -0.02 1.11 16 Total: -1.00 -75.90 318.02 2.99 -72.91 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.20 Total: 5.78 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 5.25 Total: 10.47 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -4.79 Total: -122.75 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.66 Total: -16.83 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 1.66 Total: 50.42 kcal Total: -75.90 2.99 -72.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079411939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.580 kcal (2) G-P(sol) polarization free energy of solvation -75.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds