Wall clock time and date at job start Tue Mar 31 2020 02:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33690 * 126.27596 * 2 1 4 4 C 1.30611 * 108.99870 * 180.25201 * 3 2 1 5 5 O 1.33661 * 109.15424 * 359.77016 * 4 3 2 6 6 C 1.35339 * 107.68550 * 359.97438 * 5 4 3 7 7 C 1.46727 * 126.64560 * 179.97438 * 6 5 4 8 8 O 1.21685 * 119.99761 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99878 * 0.02580 * 7 6 5 10 10 C 1.46502 * 119.99871 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.64129 * 34.30285 * 10 9 7 12 12 C 1.54322 * 110.72235 * 271.16020 * 10 9 7 13 13 N 1.47018 * 107.27336 * 219.26811 * 12 10 9 14 14 C 1.36939 * 125.64978 * 178.90891 * 13 12 10 15 15 H 1.08001 * 119.99881 * 180.02562 * 14 13 12 16 16 C 1.38813 * 119.99940 * 0.02562 * 14 13 12 17 17 N 1.31615 * 120.00066 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00060 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46867 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47117 * 119.99970 * 18 16 14 21 21 H 1.48495 * 109.47067 * 240.00335 * 18 16 14 22 22 C 1.47426 * 108.70104 * 358.94171 * 13 12 10 23 23 C 1.54909 * 104.83381 * 24.12870 * 22 13 12 24 24 H 1.08997 * 111.00194 * 81.06198 * 23 22 13 25 25 C 1.53003 * 111.00221 * 204.91626 * 23 22 13 26 26 H 1.08995 * 109.47393 * 270.13814 * 1 2 3 27 27 H 1.09003 * 109.47138 * 30.14273 * 1 2 3 28 28 H 1.09007 * 109.46610 * 150.13745 * 1 2 3 29 29 H 1.07999 * 125.42596 * 179.74390 * 4 3 2 30 30 H 0.96999 * 119.99841 * 0.02562 * 9 7 6 31 31 H 1.08998 * 109.88021 * 338.68515 * 12 10 9 32 32 H 1.09005 * 109.88017 * 99.69203 * 12 10 9 33 33 H 0.96994 * 120.00360 * 180.02562 * 17 16 14 34 34 H 1.08998 * 110.36876 * 142.97187 * 22 13 12 35 35 H 1.09009 * 110.36320 * 265.17860 * 22 13 12 36 36 H 1.08998 * 109.46949 * 172.19393 * 25 23 22 37 37 H 1.08994 * 109.47021 * 292.19568 * 25 23 22 38 38 H 1.09005 * 109.47193 * 52.20022 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5451 0.6899 -0.0054 5 8 3.5889 -0.6460 -0.0040 6 6 2.3137 -1.0992 0.0032 7 6 1.8827 -2.5017 0.0066 8 8 0.6966 -2.7737 0.0127 9 7 2.8004 -3.4887 0.0031 10 6 2.3701 -4.8891 0.0071 11 1 1.4488 -5.0096 -0.5628 12 6 2.1893 -5.4006 1.4518 13 7 2.6943 -6.7808 1.4926 14 6 2.7324 -7.5843 2.6008 15 1 3.1245 -8.5879 2.5269 16 6 2.2671 -7.1088 3.8191 17 7 1.7888 -5.8859 3.9090 18 14 2.3197 -8.2046 5.3311 19 1 2.8978 -9.5230 4.9669 20 1 3.1602 -7.5665 6.3759 21 1 0.9423 -8.3955 5.8522 22 6 3.1535 -7.1562 0.1429 23 6 3.4856 -5.8117 -0.5512 24 1 4.4722 -5.4536 -0.2574 25 6 3.3814 -5.9395 -2.0723 26 1 -0.3634 0.0025 1.0276 27 1 -0.3633 0.8887 -0.5161 28 1 -0.3633 -0.8913 -0.5117 29 1 4.4043 1.3443 -0.0107 30 1 3.7458 -3.2718 -0.0014 31 1 2.7596 -4.7768 2.1400 32 1 1.1335 -5.3815 1.7224 33 1 1.4640 -5.5535 4.7604 34 1 4.0444 -7.7810 0.2055 35 1 2.3622 -7.6778 -0.3956 36 1 3.4825 -4.9543 -2.5275 37 1 4.1750 -6.5915 -2.4373 38 1 2.4125 -6.3637 -2.3358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079536566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:51 Heat of formation + Delta-G solvation = -14.699229 kcal Electronic energy + Delta-G solvation = -22032.255702 eV Core-core repulsion = 18683.148132 eV Total energy + Delta-G solvation = -3349.107570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.47591 -40.96841 -39.16596 -36.50289 -35.61530 -34.33214 -32.67835 -32.18111 -30.01865 -28.61096 -27.35757 -25.65406 -24.58658 -23.01452 -22.16968 -21.62261 -21.21676 -19.20476 -18.90712 -17.95477 -17.55298 -17.40115 -16.91702 -15.90305 -15.76511 -15.55671 -15.47621 -14.80494 -14.50776 -14.29602 -14.11958 -14.02417 -13.75448 -13.34869 -13.22370 -13.06051 -12.90523 -12.62983 -12.18666 -12.16525 -12.09669 -11.98263 -11.87871 -11.67600 -11.49094 -11.23522 -10.77563 -10.30157 -9.90567 -8.94203 -7.86368 -5.24147 -0.24502 1.37117 1.41761 1.44279 1.45893 1.56301 1.94957 2.13360 2.48572 3.13716 3.32682 3.51293 3.65378 3.69534 3.80997 4.01582 4.07533 4.39045 4.40424 4.47753 4.59410 4.65713 4.69903 4.79988 4.87834 4.97574 5.04769 5.07214 5.11726 5.26968 5.30384 5.43717 5.48228 5.56528 5.73772 6.15030 6.27659 6.54815 6.96227 7.06413 7.74140 8.37639 9.23295 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018693 B = 0.004868 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.513272 B = 5750.638032 C = 6568.714503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.073 3.927 3 N -0.523 5.523 4 C 0.230 3.770 5 O -0.192 6.192 6 C -0.135 4.135 7 C 0.604 3.396 8 O -0.547 6.547 9 N -0.689 5.689 10 C 0.135 3.865 11 H 0.084 0.916 12 C 0.187 3.813 13 N -0.628 5.628 14 C -0.240 4.240 15 H 0.090 0.910 16 C -0.070 4.070 17 N -0.954 5.954 18 Si 0.980 3.020 19 H -0.260 1.260 20 H -0.292 1.292 21 H -0.296 1.296 22 C 0.133 3.867 23 C -0.094 4.094 24 H 0.090 0.910 25 C -0.129 4.129 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.313 0.687 30 H 0.414 0.586 31 H 0.015 0.985 32 H -0.005 1.005 33 H 0.244 0.756 34 H 0.056 0.944 35 H 0.029 0.971 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.818 11.034 -12.759 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 N -0.252 5.252 4 C 0.005 3.995 5 O -0.078 6.078 6 C -0.190 4.190 7 C 0.390 3.610 8 O -0.427 6.427 9 N -0.339 5.339 10 C 0.030 3.970 11 H 0.102 0.898 12 C 0.061 3.939 13 N -0.355 5.355 14 C -0.369 4.369 15 H 0.108 0.892 16 C -0.262 4.262 17 N -0.603 5.603 18 Si 0.808 3.192 19 H -0.184 1.184 20 H -0.219 1.219 21 H -0.223 1.223 22 C 0.008 3.992 23 C -0.114 4.114 24 H 0.109 0.891 25 C -0.187 4.187 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.328 0.672 30 H 0.250 0.750 31 H 0.033 0.967 32 H 0.013 0.987 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.808 11.376 -12.565 17.917 hybrid contribution 0.321 -0.906 1.435 1.727 sum 6.129 10.470 -11.130 16.464 Atomic orbital electron populations 1.20394 0.85030 1.04492 1.03872 1.22300 0.99058 0.86708 0.96917 1.70375 1.02523 1.31103 1.21187 1.29663 0.98285 0.78885 0.92643 1.84491 1.28390 1.25574 1.69368 1.22579 0.82504 0.95449 1.18437 1.16567 0.85622 0.82255 0.76542 1.90845 1.17142 1.82552 1.52163 1.45647 1.09925 1.05328 1.73004 1.22201 0.98699 0.79339 0.96784 0.89817 1.21107 0.95571 0.85463 0.91784 1.44727 1.73211 1.11919 1.05601 1.19571 1.34665 0.95885 0.86807 0.89216 1.25722 1.01358 0.98167 1.00984 1.70232 1.48419 1.17347 1.24333 0.84981 0.76744 0.78406 0.79048 1.18392 1.21934 1.22297 1.21871 0.97404 0.95391 0.84561 1.22551 0.97538 0.94293 0.96974 0.89126 1.21659 1.02737 1.02667 0.91609 0.90059 0.88614 0.89927 0.67234 0.74965 0.96663 0.98674 0.94668 0.92543 0.95287 0.91555 0.90216 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.11 9.87 71.23 0.70 -1.41 16 2 C 0.07 2.09 7.16 41.83 0.30 2.39 16 3 N -0.52 -12.55 11.26 -303.14 -3.41 -15.96 16 4 C 0.23 3.78 13.21 130.42 1.72 5.50 16 5 O -0.19 -4.38 10.57 -7.01 -0.07 -4.45 16 6 C -0.13 -4.02 7.18 24.05 0.17 -3.85 16 7 C 0.60 21.55 7.79 86.46 0.67 22.22 16 8 O -0.55 -23.09 14.48 -4.30 -0.06 -23.15 16 9 N -0.69 -22.85 5.12 -440.83 -2.26 -25.11 16 10 C 0.14 5.16 2.74 46.18 0.13 5.29 16 11 H 0.08 3.36 7.52 -2.39 -0.02 3.34 16 12 C 0.19 9.70 5.12 86.73 0.44 10.14 16 13 N -0.63 -32.59 3.39 -691.98 -2.35 -34.94 16 14 C -0.24 -13.60 10.28 84.03 0.86 -12.74 16 15 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 16 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 17 N -0.95 -59.94 10.31 21.65 0.22 -59.72 16 18 Si 0.98 46.65 29.55 68.60 2.03 48.67 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 21 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 22 C 0.13 5.16 6.70 86.85 0.58 5.75 16 23 C -0.09 -2.91 3.26 -9.40 -0.03 -2.94 16 24 H 0.09 2.62 8.01 -2.39 -0.02 2.60 16 25 C -0.13 -2.92 9.31 71.98 0.67 -2.25 16 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.08 2.39 6.47 -2.38 -0.02 2.38 16 29 H 0.31 0.74 8.06 -2.91 -0.02 0.72 16 30 H 0.41 11.34 8.34 -92.71 -0.77 10.57 16 31 H 0.02 0.88 7.27 -2.39 -0.02 0.86 16 32 H 0.00 -0.31 7.51 -2.38 -0.02 -0.33 16 33 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.03 1.11 7.99 -2.38 -0.02 1.10 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.29 8.08 -2.38 -0.02 1.27 16 Total: -1.00 -78.23 320.20 1.10 -77.13 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.31 Total: 13.01 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: 6.69 Total: 24.50 kcal Atomic # 7 Polarization: -127.93 SS G_CDS: -7.79 Total: -135.72 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.14 Total: -27.60 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -78.23 1.10 -77.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079536566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.431 kcal (2) G-P(sol) polarization free energy of solvation -78.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds