Wall clock time and date at job start Tue Mar 31 2020 01:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30008 * 127.33479 * 2 1 4 4 O 1.20659 * 112.30079 * 180.27021 * 3 2 1 5 5 C 1.33494 * 113.15334 * 359.73207 * 4 3 2 6 6 C 1.37353 * 106.34366 * 359.97438 * 5 4 3 7 7 C 1.47397 * 128.56455 * 179.97438 * 6 5 4 8 8 O 1.21614 * 120.00008 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00056 * 0.03159 * 7 6 5 10 10 C 1.46503 * 120.00117 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.64133 * 31.85488 * 10 9 7 12 12 C 1.54327 * 110.72054 * 268.51928 * 10 9 7 13 13 N 1.47023 * 107.27183 * 219.44343 * 12 10 9 14 14 C 1.36926 * 125.64805 * 178.92004 * 13 12 10 15 15 H 1.08007 * 120.00436 * 180.02562 * 14 13 12 16 16 C 1.38815 * 120.00106 * 0.02562 * 14 13 12 17 17 N 1.31619 * 120.00194 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99986 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46767 * 60.00784 * 18 16 14 20 20 H 1.48505 * 109.46905 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47645 * 300.00780 * 18 16 14 22 22 C 1.47426 * 108.70017 * 358.94170 * 13 12 10 23 23 C 1.54908 * 104.83670 * 24.12554 * 22 13 12 24 24 H 1.09002 * 111.03096 * 81.07805 * 23 22 13 25 25 C 1.52997 * 111.00591 * 204.91523 * 23 22 13 26 26 H 1.08994 * 109.47058 * 270.14976 * 1 2 3 27 27 H 1.09004 * 109.46927 * 30.15382 * 1 2 3 28 28 H 1.08999 * 109.46796 * 150.15115 * 1 2 3 29 29 H 1.08004 * 126.82306 * 179.97438 * 5 4 3 30 30 H 0.97003 * 120.00074 * 359.97438 * 9 7 6 31 31 H 1.09007 * 109.87861 * 338.86186 * 12 10 9 32 32 H 1.08997 * 109.87995 * 100.02146 * 12 10 9 33 33 H 0.96993 * 120.00208 * 179.97438 * 17 16 14 34 34 H 1.09003 * 110.36151 * 265.28751 * 22 13 12 35 35 H 1.08998 * 110.36368 * 142.96742 * 22 13 12 36 36 H 1.09002 * 109.47153 * 172.19741 * 25 23 22 37 37 H 1.09001 * 109.46832 * 52.19932 * 25 23 22 38 38 H 1.09004 * 109.47261 * 292.19913 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0053 5 6 3.6494 -0.6008 -0.0040 6 6 2.3992 -1.1696 0.0037 7 6 2.0401 -2.5992 0.0076 8 8 0.8705 -2.9323 0.0141 9 7 3.0079 -3.5371 0.0041 10 6 2.6510 -4.9580 0.0085 11 1 1.7142 -5.1205 -0.5245 12 6 2.5619 -5.4941 1.4529 13 7 3.1426 -6.8448 1.4538 14 6 3.2728 -7.6567 2.5487 15 1 3.7154 -8.6365 2.4449 16 6 2.8360 -7.2207 3.7920 17 7 2.2961 -6.0270 3.9185 18 14 3.0130 -8.3287 5.2855 19 1 4.4480 -8.6446 5.5001 20 1 2.4739 -7.6352 6.4830 21 1 2.2573 -9.5871 5.0608 22 6 3.5620 -7.1799 0.0808 23 6 3.7895 -5.8119 -0.6095 24 1 4.7671 -5.4029 -0.3546 25 6 3.6258 -5.9290 -2.1262 26 1 -0.3633 0.0027 1.0276 27 1 -0.3633 0.8886 -0.5162 28 1 -0.3633 -0.8913 -0.5115 29 1 4.5967 -1.1195 -0.0082 30 1 3.9408 -3.2714 -0.0014 31 1 3.1270 -4.8471 2.1239 32 1 1.5194 -5.5385 1.7681 33 1 1.9906 -5.7225 4.7872 34 1 2.7767 -7.7368 -0.4304 35 1 4.4875 -7.7554 0.0967 36 1 3.6530 -4.9349 -2.5724 37 1 2.6709 -6.4031 -2.3530 38 1 4.4369 -6.5325 -2.5337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080365797.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:20 Heat of formation + Delta-G solvation = 23.830035 kcal Electronic energy + Delta-G solvation = -21942.755222 eV Core-core repulsion = 18595.318406 eV Total energy + Delta-G solvation = -3347.436816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.95513 -40.92895 -39.09651 -35.70553 -35.47239 -34.44144 -32.98725 -32.13739 -29.96948 -29.34757 -27.39218 -26.08278 -24.83881 -22.44013 -22.28176 -21.52324 -21.12377 -19.17597 -18.87451 -18.76501 -17.56824 -17.36920 -16.86639 -16.10556 -15.80950 -15.50607 -15.03827 -14.69424 -14.45859 -14.26577 -14.13709 -14.02241 -13.71249 -13.43338 -13.32033 -13.03301 -12.84089 -12.56509 -12.35376 -12.24960 -12.06008 -11.84626 -11.65806 -11.44600 -11.16770 -10.96468 -10.79166 -10.73047 -10.02813 -8.91744 -7.84473 -5.21841 0.09037 0.71794 1.45312 1.48929 1.55188 1.84910 2.16424 2.29518 2.50308 3.00150 3.31732 3.34374 3.59775 3.75286 3.83667 4.02126 4.06737 4.12980 4.42679 4.51154 4.58690 4.59908 4.66067 4.74537 4.75500 4.91011 5.08168 5.10409 5.13149 5.21254 5.31038 5.45748 5.52359 5.62389 5.78666 6.17430 6.51657 7.07022 7.17412 7.20764 7.76816 8.40052 9.24521 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.004730 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.701463 B = 5918.330349 C = 6726.967107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.053 3.947 3 N -0.378 5.378 4 O 0.100 5.900 5 C 0.035 3.965 6 C -0.281 4.281 7 C 0.593 3.407 8 O -0.573 6.573 9 N -0.690 5.690 10 C 0.138 3.862 11 H 0.077 0.923 12 C 0.187 3.813 13 N -0.628 5.628 14 C -0.242 4.242 15 H 0.088 0.912 16 C -0.068 4.068 17 N -0.953 5.953 18 Si 0.978 3.022 19 H -0.271 1.271 20 H -0.299 1.299 21 H -0.278 1.278 22 C 0.131 3.869 23 C -0.092 4.092 24 H 0.098 0.902 25 C -0.130 4.130 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.278 0.722 30 H 0.415 0.585 31 H 0.021 0.979 32 H -0.011 1.011 33 H 0.244 0.756 34 H 0.024 0.976 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.423 9.667 -12.750 17.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 N -0.087 5.087 4 O 0.042 5.958 5 C -0.047 4.047 6 C -0.289 4.289 7 C 0.380 3.620 8 O -0.453 6.453 9 N -0.341 5.341 10 C 0.032 3.968 11 H 0.095 0.905 12 C 0.060 3.940 13 N -0.354 5.354 14 C -0.371 4.371 15 H 0.106 0.894 16 C -0.261 4.261 17 N -0.602 5.602 18 Si 0.807 3.193 19 H -0.197 1.197 20 H -0.225 1.225 21 H -0.204 1.204 22 C 0.006 3.994 23 C -0.112 4.112 24 H 0.116 0.884 25 C -0.187 4.187 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.293 0.707 30 H 0.252 0.748 31 H 0.039 0.961 32 H 0.007 0.993 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.390 10.735 -12.543 17.367 hybrid contribution -0.178 -1.336 1.428 1.964 sum 5.213 9.399 -11.115 15.461 Atomic orbital electron populations 1.20270 0.84599 1.04466 1.04071 1.25158 0.99751 0.86740 0.99246 1.73660 0.89843 1.23746 1.21442 1.84535 1.20792 1.23840 1.66641 1.27250 1.00809 0.82947 0.93690 1.22229 0.94551 0.94308 1.17799 1.17150 0.85204 0.84053 0.75563 1.90777 1.20186 1.82667 1.51713 1.45481 1.09573 1.05115 1.73927 1.22098 0.98980 0.79434 0.96318 0.90526 1.21130 0.94872 0.85894 0.92095 1.44711 1.71441 1.14966 1.04319 1.19480 1.33763 0.97533 0.86337 0.89389 1.25687 1.01220 0.98464 1.00680 1.70213 1.47331 1.19706 1.22965 0.85152 0.78142 0.77700 0.78355 1.19672 1.22521 1.20413 1.21877 0.97713 0.95653 0.84153 1.22548 0.97704 0.94495 0.96422 0.88382 1.21663 1.02383 1.02730 0.91969 0.89813 0.88680 0.89888 0.70654 0.74760 0.96115 0.99274 0.94690 0.95842 0.92534 0.91216 0.93244 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.90 10.14 71.24 0.72 -1.18 16 2 C 0.05 1.45 7.58 45.16 0.34 1.79 16 3 N -0.38 -9.73 12.01 -44.79 -0.54 -10.27 16 4 O 0.10 2.04 11.06 76.98 0.85 2.89 16 5 C 0.04 0.57 11.85 67.61 0.80 1.37 16 6 C -0.28 -7.30 6.47 -18.75 -0.12 -7.42 16 7 C 0.59 19.41 7.81 86.66 0.68 20.08 16 8 O -0.57 -24.04 15.34 -4.07 -0.06 -24.11 16 9 N -0.69 -19.87 5.10 -440.19 -2.24 -22.11 16 10 C 0.14 4.97 2.79 46.18 0.13 5.10 16 11 H 0.08 3.04 7.44 -2.39 -0.02 3.02 16 12 C 0.19 9.35 5.12 86.73 0.44 9.80 16 13 N -0.63 -31.81 3.39 -691.97 -2.35 -34.16 16 14 C -0.24 -13.49 10.28 84.04 0.86 -12.62 16 15 H 0.09 4.60 7.83 -2.91 -0.02 4.57 16 16 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 17 N -0.95 -58.91 10.31 21.65 0.22 -58.69 16 18 Si 0.98 46.01 29.55 68.60 2.03 48.03 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 C 0.13 4.95 6.70 86.85 0.58 5.53 16 23 C -0.09 -2.64 3.27 -9.40 -0.03 -2.67 16 24 H 0.10 2.47 8.01 -2.39 -0.02 2.45 16 25 C -0.13 -2.73 9.31 71.98 0.67 -2.06 16 26 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.08 2.28 7.12 -2.39 -0.02 2.26 16 29 H 0.28 1.19 7.68 -2.91 -0.02 1.17 16 30 H 0.41 8.20 7.75 -92.71 -0.72 7.48 16 31 H 0.02 1.14 7.27 -2.38 -0.02 1.13 16 32 H -0.01 -0.67 7.51 -2.39 -0.02 -0.69 16 33 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.02 0.90 7.98 -2.39 -0.02 0.88 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.05 1.13 8.07 -2.39 -0.02 1.11 16 38 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -78.93 320.58 3.82 -75.11 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.36 Total: 9.00 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 5.55 Total: 14.29 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -4.91 Total: -125.22 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.79 Total: -21.21 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -78.93 3.82 -75.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080365797.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.938 kcal (2) G-P(sol) polarization free energy of solvation -78.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds