Wall clock time and date at job start Tue Mar 31 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34486 * 126.83573 * 2 1 4 4 N 1.36448 * 108.85799 * 180.25512 * 3 2 1 5 5 H 0.96993 * 124.85113 * 179.73236 * 4 3 2 6 6 C 1.34659 * 110.29557 * 359.74797 * 4 3 2 7 7 C 1.36768 * 108.39928 * 0.02562 * 6 4 3 8 8 C 1.47257 * 126.94288 * 179.97438 * 7 6 4 9 9 O 1.21629 * 120.00387 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00061 * 0.02562 * 8 7 6 11 11 C 1.46504 * 120.00192 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.64257 * 36.67677 * 11 10 8 13 13 C 1.54325 * 110.71557 * 273.54211 * 11 10 8 14 14 N 1.47018 * 107.27099 * 263.82677 * 13 11 10 15 15 C 1.36941 * 125.65333 * 181.01921 * 14 13 11 16 16 H 1.08003 * 119.99654 * 10.75826 * 15 14 13 17 17 C 1.38811 * 120.00604 * 190.74952 * 15 14 13 18 18 N 1.31621 * 119.99472 * 9.07328 * 17 15 14 19 19 Si 1.86802 * 120.00075 * 189.06828 * 17 15 14 20 20 H 1.48497 * 109.46995 * 84.99393 * 19 17 15 21 21 H 1.48497 * 109.47222 * 324.99067 * 19 17 15 22 22 H 1.48502 * 109.46692 * 204.99429 * 19 17 15 23 23 C 1.47428 * 108.70261 * 1.29115 * 14 13 11 24 24 C 1.55124 * 104.71992 * 335.55012 * 23 14 13 25 25 H 1.09006 * 111.19065 * 279.19363 * 24 23 14 26 26 O 1.42905 * 110.93980 * 155.29276 * 24 23 14 27 27 H 1.08997 * 109.46844 * 270.14892 * 1 2 3 28 28 H 1.09000 * 109.46956 * 30.14160 * 1 2 3 29 29 H 1.08997 * 109.47353 * 150.14603 * 1 2 3 30 30 H 1.08008 * 125.57085 * 0.04213 * 3 2 1 31 31 H 1.08001 * 125.80016 * 180.02562 * 6 4 3 32 32 H 0.96994 * 120.00222 * 359.97438 * 10 8 7 33 33 H 1.09003 * 109.88667 * 144.41028 * 13 11 10 34 34 H 1.09003 * 109.88677 * 23.24244 * 13 11 10 35 35 H 0.96997 * 119.99379 * 180.02562 * 18 17 15 36 36 H 1.08991 * 110.36854 * 94.48382 * 23 14 13 37 37 H 1.08999 * 110.36513 * 216.80406 * 23 14 13 38 38 H 0.96703 * 114.00004 * 67.95673 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3840 1.2413 -0.0107 6 6 3.6656 -0.6902 -0.0040 7 6 2.3864 -1.1741 0.0025 8 6 1.9749 -2.5880 0.0059 9 8 0.7937 -2.8777 0.0112 10 7 2.9073 -3.5612 0.0032 11 6 2.4980 -4.9678 0.0060 12 1 1.6028 -5.1088 -0.5997 13 6 2.2655 -5.4658 1.4481 14 7 3.5011 -6.1323 1.8843 15 6 3.6989 -6.7305 3.1002 16 1 2.8629 -6.8928 3.7645 17 6 4.9737 -7.1285 3.4788 18 7 6.0153 -6.7747 2.7562 19 14 5.2108 -8.1661 5.0140 20 1 5.0175 -9.5995 4.6773 21 1 4.2197 -7.7613 6.0430 22 1 6.5838 -7.9623 5.5419 23 6 4.4944 -6.0444 0.7984 24 6 3.6522 -5.8764 -0.4935 25 1 3.2709 -6.8360 -0.8427 26 8 4.4098 -5.2266 -1.5162 27 1 -0.3633 0.0027 1.0276 28 1 -0.3633 0.8887 -0.5160 29 1 -0.3634 -0.8913 -0.5115 30 1 1.9868 2.1059 0.0006 31 1 4.5664 -1.2861 -0.0071 32 1 3.8494 -3.3303 -0.0015 33 1 1.4363 -6.1731 1.4669 34 1 2.0495 -4.6208 2.1018 35 1 6.9060 -7.0531 3.0206 36 1 5.1427 -5.1808 0.9463 37 1 5.0850 -6.9592 0.7495 38 1 5.1424 -5.7561 -1.8596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084052212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:45 Heat of formation + Delta-G solvation = -39.306627 kcal Electronic energy + Delta-G solvation = -22021.002462 eV Core-core repulsion = 18670.827835 eV Total energy + Delta-G solvation = -3350.174627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.06048 -40.64204 -38.99317 -36.62934 -35.25930 -33.58449 -33.29492 -31.15685 -29.80463 -28.71022 -27.40234 -26.36789 -24.12162 -22.31364 -21.60991 -20.80901 -20.18630 -19.20097 -18.86856 -18.24577 -17.36283 -16.90835 -16.58003 -16.04220 -15.75767 -15.12441 -15.00283 -14.67737 -14.60330 -14.43559 -13.97698 -13.97416 -13.82071 -13.54448 -13.23888 -13.16317 -12.90165 -12.77068 -12.63822 -12.28159 -12.05476 -11.90381 -11.71991 -10.87129 -10.78984 -10.69600 -10.04171 -9.49509 -9.14350 -8.90291 -7.90789 -5.26363 0.82239 1.47096 1.48489 1.53811 1.56613 2.26691 2.46470 2.51890 2.63029 3.12400 3.28923 3.68176 3.81913 4.01750 4.03073 4.13619 4.31073 4.33398 4.49212 4.55281 4.65318 4.73978 4.89978 4.94406 4.95446 4.99156 5.19126 5.35480 5.37294 5.47499 5.63189 5.65162 5.87375 5.99292 6.15352 6.70246 6.77635 6.89156 7.05857 7.42516 7.69931 8.35911 9.20259 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.004479 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.858964 B = 6250.416655 C = 6436.464219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.151 4.151 3 C -0.007 4.007 4 N -0.532 5.532 5 H 0.438 0.562 6 C 0.063 3.937 7 C -0.268 4.268 8 C 0.581 3.419 9 O -0.591 6.591 10 N -0.695 5.695 11 C 0.154 3.846 12 H 0.095 0.905 13 C 0.127 3.873 14 N -0.616 5.616 15 C -0.250 4.250 16 H 0.074 0.926 17 C -0.054 4.054 18 N -0.942 5.942 19 Si 0.977 3.023 20 H -0.282 1.282 21 H -0.275 1.275 22 H -0.291 1.291 23 C 0.161 3.839 24 C 0.088 3.912 25 H 0.087 0.913 26 O -0.559 6.559 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.207 0.793 31 H 0.190 0.810 32 H 0.406 0.594 33 H 0.039 0.961 34 H 0.011 0.989 35 H 0.251 0.749 36 H 0.012 0.988 37 H 0.046 0.954 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 14.408 -9.269 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.157 4.157 3 C -0.135 4.135 4 N -0.127 5.127 5 H 0.278 0.722 6 C -0.076 4.076 7 C -0.278 4.278 8 C 0.371 3.629 9 O -0.474 6.474 10 N -0.345 5.345 11 C 0.048 3.952 12 H 0.113 0.887 13 C 0.001 3.999 14 N -0.344 5.344 15 C -0.379 4.379 16 H 0.092 0.908 17 C -0.248 4.248 18 N -0.590 5.590 19 Si 0.805 3.195 20 H -0.209 1.209 21 H -0.200 1.200 22 H -0.217 1.217 23 C 0.035 3.965 24 C 0.027 3.973 25 H 0.105 0.895 26 O -0.366 6.366 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.224 0.776 31 H 0.207 0.793 32 H 0.242 0.758 33 H 0.057 0.943 34 H 0.029 0.971 35 H 0.060 0.940 36 H 0.030 0.970 37 H 0.064 0.936 38 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.435 14.716 -9.057 17.450 hybrid contribution 1.379 -1.009 1.019 1.989 sum -1.055 13.707 -8.038 15.925 Atomic orbital electron populations 1.20095 0.89641 1.02220 1.01436 1.20827 0.96153 0.91052 1.07697 1.22029 0.82119 0.99861 1.09466 1.41502 1.08955 1.06023 1.56232 0.72187 1.22174 0.98145 0.84966 1.02265 1.20449 0.94815 0.91831 1.20748 1.17917 0.84937 0.85319 0.74683 1.90666 1.18710 1.84555 1.53421 1.45460 1.09946 1.04706 1.74381 1.21745 0.97479 0.80975 0.94995 0.88715 1.21810 0.89989 0.94573 0.93572 1.44555 1.11073 1.64964 1.13771 1.19355 0.93447 1.31272 0.93810 0.90820 1.25580 0.94869 1.02448 1.01864 1.70095 0.97832 1.49543 1.41529 0.85127 0.76674 0.78663 0.79023 1.20865 1.20047 1.21743 1.21863 0.90467 0.99098 0.85064 1.23314 0.91501 0.94547 0.87906 0.89518 1.86338 1.48369 1.47254 1.54658 0.92594 0.89711 0.93402 0.77601 0.79274 0.75781 0.94349 0.97117 0.94019 0.97004 0.93585 0.75249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.99 9.97 71.24 0.71 -1.28 16 2 C -0.15 -4.07 6.35 -18.51 -0.12 -4.18 16 3 C -0.01 -0.12 11.82 83.12 0.98 0.87 16 4 N -0.53 -8.21 5.90 -194.55 -1.15 -9.36 16 5 H 0.44 3.08 8.96 -92.71 -0.83 2.25 16 6 C 0.06 1.41 11.40 83.91 0.96 2.37 16 7 C -0.27 -8.33 6.29 -19.04 -0.12 -8.45 16 8 C 0.58 22.21 7.81 86.61 0.68 22.88 16 9 O -0.59 -26.27 15.05 -4.12 -0.06 -26.33 16 10 N -0.70 -25.37 4.77 -440.33 -2.10 -27.47 16 11 C 0.15 5.98 3.14 46.18 0.14 6.13 16 12 H 0.09 3.63 7.69 -2.39 -0.02 3.61 16 13 C 0.13 5.81 6.98 86.73 0.61 6.41 16 14 N -0.62 -31.90 3.39 -691.56 -2.35 -34.24 16 15 C -0.25 -14.16 10.24 84.03 0.86 -13.30 16 16 H 0.07 4.11 7.85 -2.91 -0.02 4.08 16 17 C -0.05 -2.99 5.40 84.86 0.46 -2.53 16 18 N -0.94 -54.30 10.68 21.65 0.23 -54.07 16 19 Si 0.98 45.15 29.56 68.60 2.03 47.18 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 C 0.16 7.44 5.14 86.93 0.45 7.89 16 24 C 0.09 3.16 4.23 32.06 0.14 3.30 16 25 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 26 O -0.56 -16.63 12.63 -148.98 -1.88 -18.52 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.52 6.86 -2.39 -0.02 1.51 16 30 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.19 3.46 7.45 -2.91 -0.02 3.44 16 32 H 0.41 13.72 7.14 -92.71 -0.66 13.06 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.01 0.54 8.04 -2.39 -0.02 0.52 16 35 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 36 H 0.01 0.60 8.07 -2.39 -0.02 0.58 16 37 H 0.05 2.35 6.95 -2.39 -0.02 2.34 16 38 H 0.40 8.49 9.12 -74.05 -0.68 7.82 16 Total: -1.00 -76.57 319.14 -0.59 -77.16 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -1.05 Total: 25.54 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 5.74 Total: 20.10 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -5.36 Total: -125.14 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -1.94 Total: -44.84 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -76.57 -0.59 -77.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084052212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.853 kcal (2) G-P(sol) polarization free energy of solvation -76.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds