Wall clock time and date at job start Tue Mar 31 2020 01:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35315 * 126.67045 * 2 1 4 4 C 1.42270 * 103.92596 * 180.02562 * 3 2 1 5 5 C 1.48329 * 126.93963 * 179.73829 * 4 3 2 6 6 O 1.21493 * 120.00178 * 354.03772 * 5 4 3 7 7 N 1.34778 * 119.99829 * 174.03952 * 5 4 3 8 8 C 1.46498 * 120.00067 * 5.29613 * 7 5 4 9 9 C 1.46502 * 119.99841 * 185.30072 * 7 5 4 10 10 C 1.53008 * 109.46986 * 84.39226 * 9 7 5 11 11 H 1.09000 * 112.96529 * 291.40498 * 10 9 7 12 12 C 1.53943 * 113.76677 * 63.08423 * 10 9 7 13 13 C 1.53941 * 86.29097 * 137.90668 * 12 10 9 14 14 N 1.47580 * 113.76760 * 159.72509 * 10 9 7 15 15 C 1.36935 * 134.49436 * 41.06377 * 14 10 9 16 16 H 1.08004 * 120.00235 * 4.83095 * 15 14 10 17 17 C 1.38817 * 120.00118 * 184.82676 * 15 14 10 18 18 N 1.31616 * 120.00005 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99854 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47466 * 59.99913 * 19 17 15 21 21 H 1.48502 * 109.46704 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47172 * 299.99734 * 19 17 15 23 23 N 1.30988 * 106.12041 * 359.97438 * 4 3 2 24 24 O 1.20901 * 111.44180 * 0.02562 * 23 4 3 25 25 H 1.09001 * 109.46559 * 90.00273 * 1 2 3 26 26 H 1.08998 * 109.47110 * 210.00159 * 1 2 3 27 27 H 1.09000 * 109.46655 * 330.00811 * 1 2 3 28 28 H 1.08000 * 128.03420 * 359.97232 * 3 2 1 29 29 H 1.09005 * 109.46875 * 84.16729 * 8 7 5 30 30 H 1.09005 * 109.47230 * 204.15726 * 8 7 5 31 31 H 1.08994 * 109.47200 * 324.16601 * 8 7 5 32 32 H 1.08991 * 109.47442 * 204.39180 * 9 7 5 33 33 H 1.08997 * 109.46870 * 324.39782 * 9 7 5 34 34 H 1.09005 * 113.73981 * 252.25230 * 12 10 9 35 35 H 1.08995 * 113.74404 * 23.44932 * 12 10 9 36 36 H 1.09003 * 113.77428 * 90.69500 * 13 12 10 37 37 H 1.08998 * 113.77079 * 221.97839 * 13 12 10 38 38 H 0.96992 * 120.00598 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0853 0.0000 4 6 3.6272 0.5353 -0.0006 5 6 4.9077 1.2840 -0.0063 6 8 4.9036 2.4935 -0.1203 7 7 6.0756 0.6224 0.1150 8 6 6.0891 -0.8423 0.1358 9 6 7.3317 1.3682 0.2263 10 6 7.5599 1.7680 1.6855 11 1 6.8481 2.5143 2.0383 12 6 7.7265 0.5703 2.6381 13 6 8.8640 1.3760 3.2913 14 7 8.9651 2.0901 2.0011 15 6 9.9609 2.7744 1.3567 16 1 9.7523 3.2833 0.4272 17 6 11.2385 2.8141 1.8982 18 7 11.4929 2.1936 3.0307 19 14 12.5967 3.7482 1.0194 20 1 12.2147 5.1778 0.8963 21 1 13.8569 3.6372 1.7971 22 1 12.7984 3.1714 -0.3341 23 7 3.4761 -0.7659 -0.0003 24 8 2.3073 -1.0750 -0.0002 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8901 0.5137 28 1 2.0302 2.1271 -0.0004 29 1 6.0865 -1.2202 -0.8867 30 1 6.9854 -1.1902 0.6493 31 1 5.2055 -1.2064 0.6599 32 1 8.1572 0.7422 -0.1122 33 1 7.2781 2.2644 -0.3918 34 1 6.8707 0.4086 3.2936 35 1 8.0605 -0.3414 2.1428 36 1 8.5369 2.0082 4.1169 37 1 9.7419 0.7780 3.5358 38 1 12.3854 2.2216 3.4092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085468326.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:57 Heat of formation + Delta-G solvation = 98.862296 kcal Electronic energy + Delta-G solvation = -21768.510372 eV Core-core repulsion = 18424.327199 eV Total energy + Delta-G solvation = -3344.183173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -45.22145 -39.75022 -37.77815 -35.30953 -34.30630 -33.47194 -32.09946 -28.80531 -28.06934 -27.83389 -26.59970 -24.48110 -23.30046 -22.83345 -21.84898 -19.38453 -18.81189 -18.01445 -17.49853 -16.93066 -16.49455 -15.88919 -15.37298 -14.73313 -14.35853 -14.07870 -13.94507 -13.67865 -13.57081 -13.43333 -13.05829 -12.83355 -12.44897 -12.33702 -12.13552 -11.40843 -11.35200 -10.95483 -10.79008 -10.67371 -10.55225 -10.46707 -10.11898 -9.78906 -9.72097 -9.64203 -9.52950 -8.74219 -8.38738 -6.83571 -5.71843 -3.05500 1.00194 1.52719 2.70891 2.96674 3.21404 3.42612 3.46712 3.47844 3.84413 4.24560 4.50034 4.71774 4.90663 4.94121 5.01090 5.18067 5.25534 5.36283 5.43335 5.48240 5.58767 5.61045 5.72184 5.83092 5.92505 6.01067 6.20248 6.28267 6.45760 6.60794 6.72725 6.81324 7.28276 7.41942 7.50003 7.62977 7.84426 8.03088 8.18058 9.08684 9.75196 10.64985 11.44302 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.039606 B = 0.003650 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.786835 B = 7668.937226 C = 7890.747580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.036 4.036 3 C -0.185 4.185 4 C -0.013 4.013 5 C 0.589 3.411 6 O -0.523 6.523 7 N -0.588 5.588 8 C 0.070 3.930 9 C 0.117 3.883 10 C 0.129 3.871 11 H 0.048 0.952 12 C -0.158 4.158 13 C 0.156 3.844 14 N -0.601 5.601 15 C -0.223 4.223 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 N -0.329 5.329 24 O 0.111 5.889 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.179 0.821 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.023 0.977 37 H 0.078 0.922 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.401 -8.471 -5.338 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.099 4.099 3 C -0.208 4.208 4 C -0.172 4.172 5 C 0.373 3.627 6 O -0.398 6.398 7 N -0.321 5.321 8 C -0.073 4.073 9 C -0.006 4.006 10 C 0.021 3.979 11 H 0.065 0.935 12 C -0.196 4.196 13 C 0.031 3.969 14 N -0.327 5.327 15 C -0.351 4.351 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.568 5.568 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 N -0.033 5.033 24 O 0.039 5.961 25 H 0.107 0.893 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.197 0.803 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.096 0.904 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -20.113 -8.692 -5.433 22.575 hybrid contribution 0.490 1.366 -0.347 1.492 sum -19.623 -7.326 -5.780 21.729 Atomic orbital electron populations 1.20358 0.83557 1.04857 1.04248 1.24465 0.96462 0.85563 1.03440 1.22446 0.89822 1.01537 1.06969 1.23617 0.96932 0.90015 1.06662 1.16983 0.81550 0.86232 0.77888 1.90804 1.86259 1.12824 1.49875 1.47715 1.06475 1.07626 1.70237 1.22200 1.04258 0.78772 1.02090 1.21924 0.82758 0.96749 0.99121 1.22536 0.88889 0.94209 0.92238 0.93504 1.23752 0.99185 0.97623 0.99028 1.22303 0.94915 0.91434 0.88238 1.46036 1.05185 1.63803 1.17709 1.18987 0.87323 1.25082 1.03672 0.90421 1.24768 0.97175 1.00892 0.97490 1.69806 1.20592 1.46811 1.19593 0.86218 0.81400 0.79604 0.78650 1.21202 1.21598 1.21074 1.74330 0.96539 1.15564 1.16850 1.84788 1.11493 1.33649 1.66218 0.89281 0.89651 0.88823 0.80323 0.92680 0.90211 0.89427 0.89246 0.90383 0.93484 0.90879 0.95919 0.90354 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.45 36.01 0.38 0.10 16 2 C -0.04 -0.31 7.47 -35.35 -0.26 -0.58 16 3 C -0.19 -2.06 10.93 -39.08 -0.43 -2.48 16 4 C -0.01 -0.19 6.88 -82.53 -0.57 -0.76 16 5 C 0.59 10.16 7.65 -12.11 -0.09 10.06 16 6 O -0.52 -10.59 16.60 5.37 0.09 -10.50 16 7 N -0.59 -9.76 2.75 -182.51 -0.50 -10.26 16 8 C 0.07 0.94 9.40 59.85 0.56 1.50 16 9 C 0.12 2.26 5.30 -4.04 -0.02 2.24 16 10 C 0.13 2.82 4.55 -66.86 -0.30 2.51 16 11 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 12 C -0.16 -3.12 7.28 -25.80 -0.19 -3.31 16 13 C 0.16 3.81 7.64 -2.85 -0.02 3.79 16 14 N -0.60 -15.78 3.58 -169.73 -0.61 -16.39 16 15 C -0.22 -6.36 10.51 -15.06 -0.16 -6.52 16 16 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 18 N -0.92 -27.66 11.32 55.49 0.63 -27.03 16 19 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 N -0.33 -4.21 8.67 33.29 0.29 -3.92 16 24 O 0.11 1.17 11.18 17.23 0.19 1.36 16 25 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.04 6.56 -51.93 -0.34 0.70 16 31 H 0.09 1.14 5.25 -51.93 -0.27 0.87 16 32 H 0.09 1.72 8.03 -51.93 -0.42 1.30 16 33 H 0.08 1.61 7.52 -51.93 -0.39 1.22 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.36 6.77 -51.93 -0.35 1.01 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 2.07 6.97 -51.93 -0.36 1.71 16 38 H 0.25 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 320.82 15.07 4.83 4.83 Total: -1.00 -33.82 320.82 -6.36 -40.19 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.06 Total: -2.07 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -1.20 Total: 6.26 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.19 Total: -57.61 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.28 Total: -9.13 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.82 -6.36 -40.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085468326.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.050 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds