Wall clock time and date at job start Tue Mar 31 2020 01:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35315 * 126.67045 * 2 1 4 4 C 1.42270 * 103.92596 * 180.02562 * 3 2 1 5 5 C 1.48329 * 126.93963 * 179.73829 * 4 3 2 6 6 O 1.21493 * 120.00178 * 354.03772 * 5 4 3 7 7 N 1.34778 * 119.99829 * 174.03952 * 5 4 3 8 8 C 1.46498 * 120.00067 * 5.29613 * 7 5 4 9 9 C 1.46502 * 119.99841 * 185.30072 * 7 5 4 10 10 C 1.53008 * 109.46986 * 84.39226 * 9 7 5 11 11 H 1.09000 * 112.96529 * 291.40498 * 10 9 7 12 12 C 1.53943 * 113.76677 * 63.08423 * 10 9 7 13 13 C 1.53941 * 86.29097 * 137.90668 * 12 10 9 14 14 N 1.47580 * 113.76760 * 159.72509 * 10 9 7 15 15 C 1.36935 * 134.49436 * 41.06377 * 14 10 9 16 16 H 1.08004 * 120.00235 * 4.83095 * 15 14 10 17 17 C 1.38817 * 120.00118 * 184.82676 * 15 14 10 18 18 N 1.31616 * 120.00005 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99854 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47466 * 59.99913 * 19 17 15 21 21 H 1.48502 * 109.46704 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47172 * 299.99734 * 19 17 15 23 23 N 1.30988 * 106.12041 * 359.97438 * 4 3 2 24 24 O 1.20901 * 111.44180 * 0.02562 * 23 4 3 25 25 H 1.09001 * 109.46559 * 90.00273 * 1 2 3 26 26 H 1.08998 * 109.47110 * 210.00159 * 1 2 3 27 27 H 1.09000 * 109.46655 * 330.00811 * 1 2 3 28 28 H 1.08000 * 128.03420 * 359.97232 * 3 2 1 29 29 H 1.09005 * 109.46875 * 84.16729 * 8 7 5 30 30 H 1.09005 * 109.47230 * 204.15726 * 8 7 5 31 31 H 1.08994 * 109.47200 * 324.16601 * 8 7 5 32 32 H 1.08991 * 109.47442 * 204.39180 * 9 7 5 33 33 H 1.08997 * 109.46870 * 324.39782 * 9 7 5 34 34 H 1.09005 * 113.73981 * 252.25230 * 12 10 9 35 35 H 1.08995 * 113.74404 * 23.44932 * 12 10 9 36 36 H 1.09003 * 113.77428 * 90.69500 * 13 12 10 37 37 H 1.08998 * 113.77079 * 221.97839 * 13 12 10 38 38 H 0.96992 * 120.00598 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0853 0.0000 4 6 3.6272 0.5353 -0.0006 5 6 4.9077 1.2840 -0.0063 6 8 4.9036 2.4935 -0.1203 7 7 6.0756 0.6224 0.1150 8 6 6.0891 -0.8423 0.1358 9 6 7.3317 1.3682 0.2263 10 6 7.5599 1.7680 1.6855 11 1 6.8481 2.5143 2.0383 12 6 7.7265 0.5703 2.6381 13 6 8.8640 1.3760 3.2913 14 7 8.9651 2.0901 2.0011 15 6 9.9609 2.7744 1.3567 16 1 9.7523 3.2833 0.4272 17 6 11.2385 2.8141 1.8982 18 7 11.4929 2.1936 3.0307 19 14 12.5967 3.7482 1.0194 20 1 12.2147 5.1778 0.8963 21 1 13.8569 3.6372 1.7971 22 1 12.7984 3.1714 -0.3341 23 7 3.4761 -0.7659 -0.0003 24 8 2.3073 -1.0750 -0.0002 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8901 0.5137 28 1 2.0302 2.1271 -0.0004 29 1 6.0865 -1.2202 -0.8867 30 1 6.9854 -1.1902 0.6493 31 1 5.2055 -1.2064 0.6599 32 1 8.1572 0.7422 -0.1122 33 1 7.2781 2.2644 -0.3918 34 1 6.8707 0.4086 3.2936 35 1 8.0605 -0.3414 2.1428 36 1 8.5369 2.0082 4.1169 37 1 9.7419 0.7780 3.5358 38 1 12.3854 2.2216 3.4092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085468326.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:56 Heat of formation + Delta-G solvation = 77.022904 kcal Electronic energy + Delta-G solvation = -21769.457399 eV Core-core repulsion = 18424.327199 eV Total energy + Delta-G solvation = -3345.130200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.12802 -41.16690 -39.54937 -36.71826 -35.17684 -34.39795 -34.10950 -30.26485 -29.89389 -28.69683 -27.78931 -25.79842 -25.31420 -23.97522 -23.16410 -21.06354 -20.19897 -18.93745 -18.71473 -18.44393 -17.82203 -17.36910 -16.94737 -16.56376 -15.95299 -15.42698 -15.21497 -14.80241 -14.51657 -14.19348 -14.15819 -13.98881 -13.90605 -13.78034 -13.36321 -13.09800 -12.89902 -12.59634 -12.54912 -12.34346 -12.07640 -11.83817 -11.64252 -11.55452 -11.47121 -11.34214 -10.85540 -10.36147 -9.83666 -8.94065 -7.90654 -5.26215 0.03332 0.68068 1.43569 1.47286 1.52885 1.60299 1.98068 2.09110 2.46230 2.77970 3.27359 3.35236 3.48160 3.79888 3.91856 3.99374 4.13373 4.20263 4.26074 4.33623 4.47142 4.55730 4.69707 4.80962 4.83212 4.83522 4.88911 4.90597 4.95624 4.99743 5.17704 5.28308 5.34068 5.53233 5.64891 5.92688 6.13381 6.77173 6.90489 7.05855 7.58895 8.54581 9.24979 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.039606 B = 0.003650 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.786835 B = 7668.937226 C = 7890.747580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.008 4.008 3 C -0.205 4.205 4 C -0.041 4.041 5 C 0.585 3.415 6 O -0.564 6.564 7 N -0.588 5.588 8 C 0.071 3.929 9 C 0.133 3.867 10 C 0.130 3.870 11 H 0.030 0.970 12 C -0.124 4.124 13 C 0.149 3.851 14 N -0.626 5.626 15 C -0.236 4.236 16 H 0.078 0.922 17 C -0.063 4.063 18 N -0.951 5.951 19 Si 0.978 3.022 20 H -0.282 1.282 21 H -0.292 1.292 22 H -0.273 1.273 23 N -0.336 5.336 24 O 0.122 5.878 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.187 0.813 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.012 0.988 37 H 0.054 0.946 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.599 -9.850 -6.177 26.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 C -0.228 4.228 4 C -0.198 4.198 5 C 0.372 3.628 6 O -0.442 6.442 7 N -0.320 5.320 8 C -0.071 4.071 9 C 0.010 3.990 10 C 0.023 3.977 11 H 0.048 0.952 12 C -0.162 4.162 13 C 0.024 3.976 14 N -0.353 5.353 15 C -0.365 4.365 16 H 0.096 0.904 17 C -0.256 4.256 18 N -0.599 5.599 19 Si 0.805 3.195 20 H -0.208 1.208 21 H -0.218 1.218 22 H -0.199 1.199 23 N -0.038 5.038 24 O 0.047 5.953 25 H 0.127 0.873 26 H 0.122 0.878 27 H 0.128 0.872 28 H 0.204 0.796 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -22.329 -10.103 -6.287 25.302 hybrid contribution 1.004 1.765 -0.081 2.032 sum -21.324 -8.338 -6.368 23.766 Atomic orbital electron populations 1.20674 0.79741 1.06585 1.05978 1.25199 0.98006 0.83806 1.00129 1.22651 0.89000 1.02794 1.08386 1.23316 0.96381 0.90814 1.09320 1.17413 0.82593 0.86007 0.76783 1.90770 1.87041 1.14679 1.51695 1.47730 1.05430 1.08793 1.69999 1.22353 1.04955 0.76552 1.03245 1.21492 0.84277 0.96427 0.96838 1.22576 0.86303 0.94547 0.94320 0.95231 1.23511 0.98024 0.96854 0.97839 1.22281 0.95762 0.91780 0.87816 1.46408 1.06602 1.63713 1.18577 1.19330 0.88311 1.24960 1.03852 0.90415 1.25597 0.99399 1.02171 0.98403 1.69990 1.20711 1.48233 1.20996 0.85175 0.78179 0.78276 0.77832 1.20837 1.21756 1.19874 1.74291 0.97751 1.14772 1.17015 1.84760 1.11068 1.34232 1.65270 0.87313 0.87787 0.87190 0.79580 0.91341 0.89508 0.88634 0.89000 0.92412 0.90688 0.89127 0.97027 0.92773 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.45 71.24 0.74 0.49 16 2 C -0.01 -0.12 7.47 25.01 0.19 0.07 16 3 C -0.21 -4.25 10.93 22.60 0.25 -4.00 16 4 C -0.04 -1.13 6.88 42.96 0.30 -0.83 16 5 C 0.59 20.25 7.65 86.93 0.67 20.92 16 6 O -0.56 -23.50 16.60 -3.69 -0.06 -23.56 16 7 N -0.59 -19.22 2.75 -849.64 -2.33 -21.55 16 8 C 0.07 1.77 9.40 127.77 1.20 2.97 16 9 C 0.13 5.18 5.30 86.38 0.46 5.64 16 10 C 0.13 5.70 4.55 45.09 0.21 5.90 16 11 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 12 C -0.12 -4.79 7.28 31.25 0.23 -4.57 16 13 C 0.15 7.38 7.64 86.43 0.66 8.04 16 14 N -0.63 -33.51 3.58 -690.90 -2.48 -35.99 16 15 C -0.24 -13.71 10.51 84.03 0.88 -12.83 16 16 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 17 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 18 N -0.95 -58.31 11.32 21.65 0.25 -58.07 16 19 Si 0.98 46.90 29.55 68.60 2.03 48.92 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 N -0.34 -7.98 8.67 -49.51 -0.43 -8.41 16 24 O 0.12 2.24 11.18 71.83 0.80 3.05 16 25 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 27 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 29 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.09 2.05 6.56 -2.38 -0.02 2.04 16 31 H 0.10 2.30 5.25 -2.39 -0.01 2.28 16 32 H 0.09 3.51 8.03 -2.39 -0.02 3.49 16 33 H 0.06 2.46 7.52 -2.39 -0.02 2.44 16 34 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.09 3.20 6.77 -2.39 -0.02 3.18 16 36 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.05 2.94 6.97 -2.39 -0.02 2.92 16 38 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -75.26 320.82 5.09 -70.18 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.07 Total: 6.81 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 6.24 Total: 18.62 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -4.99 Total: -124.01 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.74 Total: -20.52 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -75.26 5.09 -70.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085468326.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.198 kcal (2) G-P(sol) polarization free energy of solvation -75.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds