Wall clock time and date at job start Tue Mar 31 2020 02:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33687 * 126.27180 * 2 1 4 4 C 1.30616 * 108.99549 * 180.02562 * 3 2 1 5 5 O 1.33666 * 109.15573 * 359.97438 * 4 3 2 6 6 C 1.35352 * 107.68295 * 0.02562 * 5 4 3 7 7 C 1.46711 * 126.64543 * 179.73415 * 6 5 4 8 8 O 1.21682 * 120.00199 * 175.36765 * 7 6 5 9 9 N 1.34779 * 120.00183 * 355.36756 * 7 6 5 10 10 C 1.46505 * 119.99848 * 5.25632 * 9 7 6 11 11 C 1.46497 * 120.00208 * 185.25870 * 9 7 6 12 12 C 1.53002 * 109.47225 * 84.38802 * 11 9 7 13 13 H 1.09000 * 112.96386 * 310.92236 * 12 11 9 14 14 C 1.53943 * 113.76775 * 179.24688 * 12 11 9 15 15 C 1.53947 * 86.29048 * 222.09391 * 14 12 11 16 16 N 1.47578 * 113.76913 * 82.60226 * 12 11 9 17 17 C 1.36930 * 134.49221 * 318.93518 * 16 12 11 18 18 H 1.08002 * 120.00498 * 2.26635 * 17 16 12 19 19 C 1.38815 * 120.00206 * 182.27177 * 17 16 12 20 20 N 1.31631 * 119.99813 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00619 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46910 * 59.99486 * 21 19 17 23 23 H 1.48494 * 109.47581 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47012 * 300.00152 * 21 19 17 25 25 H 1.09003 * 109.47238 * 269.96612 * 1 2 3 26 26 H 1.09003 * 109.47252 * 29.96219 * 1 2 3 27 27 H 1.09000 * 109.47421 * 149.96444 * 1 2 3 28 28 H 1.08005 * 125.42800 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.47193 * 56.41857 * 10 9 7 30 30 H 1.08995 * 109.46915 * 176.41940 * 10 9 7 31 31 H 1.08996 * 109.46721 * 296.41896 * 10 9 7 32 32 H 1.09005 * 109.46933 * 204.38984 * 11 9 7 33 33 H 1.09004 * 109.47073 * 324.38593 * 11 9 7 34 34 H 1.09006 * 113.74233 * 336.43685 * 14 12 11 35 35 H 1.08999 * 113.74635 * 107.63992 * 14 12 11 36 36 H 1.08997 * 113.77217 * 137.90754 * 15 14 12 37 37 H 1.09003 * 113.76740 * 269.19426 * 15 14 12 38 38 H 0.96995 * 119.99682 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5451 0.6899 -0.0006 5 8 3.5890 -0.6460 -0.0004 6 6 2.3136 -1.0992 -0.0002 7 6 1.8826 -2.5016 -0.0055 8 8 0.7000 -2.7750 0.0804 9 7 2.7965 -3.4871 -0.1054 10 6 4.2257 -3.1649 -0.0927 11 6 2.3609 -4.8806 -0.2267 12 6 2.0581 -5.1945 -1.6932 13 1 1.4156 -4.4501 -2.1635 14 6 1.6072 -6.6461 -1.9367 15 6 2.5174 -6.6150 -3.1779 16 7 3.2541 -5.5353 -2.4878 17 6 4.5317 -5.0473 -2.5564 18 1 4.8411 -4.2491 -1.8979 19 6 5.4294 -5.5785 -3.4724 20 7 5.0525 -6.5517 -4.2747 21 14 7.1720 -4.9125 -3.5665 22 1 7.8445 -5.0987 -2.2557 23 1 7.9249 -5.6425 -4.6179 24 1 7.1317 -3.4662 -3.9011 25 1 -0.3634 -0.0006 1.0277 26 1 -0.3634 0.8903 -0.5133 27 1 -0.3634 -0.8896 -0.5144 28 1 4.4044 1.3443 -0.0003 29 1 4.4650 -2.6102 0.8145 30 1 4.8062 -4.0870 -0.1185 31 1 4.4689 -2.5578 -0.9646 32 1 3.1514 -5.5408 0.1305 33 1 1.4621 -5.0336 0.3708 34 1 1.9382 -7.3435 -1.1671 35 1 0.5469 -6.7430 -2.1702 36 1 3.0998 -7.5256 -3.3185 37 1 2.0105 -6.2899 -4.0864 38 1 5.6797 -6.9226 -4.9149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085533302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:48 Heat of formation + Delta-G solvation = 55.268732 kcal Electronic energy + Delta-G solvation = -22505.269949 eV Core-core repulsion = 19159.196417 eV Total energy + Delta-G solvation = -3346.073532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.45257 -39.59066 -37.76940 -35.73869 -34.74142 -32.27596 -31.65729 -29.00459 -28.07864 -27.44317 -26.12299 -23.79768 -23.33032 -22.53326 -21.33174 -19.74502 -19.07929 -17.40490 -17.04626 -16.69286 -16.54931 -15.98041 -15.07371 -14.86330 -14.56251 -14.13987 -13.74984 -13.40512 -13.33293 -13.06433 -12.86243 -12.72030 -12.20704 -12.08422 -11.49772 -11.38750 -11.15559 -11.12233 -10.99657 -10.85343 -10.73262 -10.54598 -10.13208 -9.82373 -9.70054 -9.33683 -8.99420 -8.79922 -8.28363 -6.86531 -5.77186 -3.08184 0.85970 2.39586 2.49800 3.14668 3.31998 3.33860 3.37706 3.40910 3.98180 4.41615 4.64259 4.71601 5.12073 5.30689 5.40743 5.48460 5.50944 5.64123 5.68039 5.68791 5.81691 5.85302 5.89542 5.94269 6.04315 6.17656 6.22175 6.28699 6.44346 6.57123 6.69986 6.89080 7.25637 7.39383 7.45630 7.57768 7.60915 7.98214 8.18116 9.03261 9.71162 10.63410 11.40391 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.006119 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.773445 B = 4575.025433 C = 5699.442361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.069 3.931 3 N -0.496 5.496 4 C 0.190 3.810 5 O -0.183 6.183 6 C -0.100 4.100 7 C 0.601 3.399 8 O -0.522 6.522 9 N -0.587 5.587 10 C 0.080 3.920 11 C 0.118 3.882 12 C 0.127 3.873 13 H 0.046 0.954 14 C -0.158 4.158 15 C 0.161 3.839 16 N -0.603 5.603 17 C -0.228 4.228 18 H 0.088 0.912 19 C -0.009 4.009 20 N -0.919 5.919 21 Si 0.902 3.098 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.286 1.286 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.253 0.747 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.025 0.975 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.062 9.205 9.932 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.055 4.055 3 N -0.225 5.225 4 C -0.035 4.035 5 O -0.068 6.068 6 C -0.155 4.155 7 C 0.388 3.612 8 O -0.401 6.401 9 N -0.317 5.317 10 C -0.062 4.062 11 C -0.005 4.005 12 C 0.019 3.981 13 H 0.063 0.937 14 C -0.197 4.197 15 C 0.036 3.964 16 N -0.329 5.329 17 C -0.356 4.356 18 H 0.105 0.895 19 C -0.205 4.205 20 N -0.566 5.566 21 Si 0.733 3.267 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.213 1.213 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.113 0.887 28 H 0.269 0.731 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.437 9.606 9.839 14.449 hybrid contribution 1.632 0.051 -0.424 1.687 sum -2.805 9.657 9.414 13.775 Atomic orbital electron populations 1.20337 0.85445 1.04184 1.03468 1.22009 0.98324 0.86398 0.98795 1.70311 1.01377 1.31577 1.19264 1.28284 0.97526 0.80039 0.97657 1.84699 1.29632 1.23866 1.68613 1.23069 0.81246 0.96509 1.14698 1.16381 0.85615 0.81392 0.77826 1.90818 1.15778 1.81724 1.51816 1.47679 1.06870 1.07255 1.69881 1.22080 0.80212 1.02857 1.01100 1.22088 1.00664 0.79234 0.98470 1.22613 0.89674 0.95004 0.90823 0.93677 1.23765 0.98467 0.96432 1.01046 1.22175 0.89589 0.93279 0.91370 1.46204 1.05182 1.37671 1.43847 1.19277 0.84802 1.15463 1.16046 0.89479 1.24794 0.98180 0.99187 0.98363 1.69818 1.34475 1.27980 1.24353 0.86352 0.84717 0.78240 0.77401 1.21057 1.21550 1.21314 0.90205 0.90728 0.88739 0.73108 0.92722 0.88506 0.91547 0.89400 0.90246 0.90662 0.92838 0.91151 0.95722 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.83 36.01 0.35 -0.62 16 2 C 0.07 1.02 7.16 -82.47 -0.59 0.42 16 3 N -0.50 -6.80 11.26 -10.88 -0.12 -6.92 16 4 C 0.19 2.10 13.21 52.25 0.69 2.79 16 5 O -0.18 -2.51 7.65 4.39 0.03 -2.47 16 6 C -0.10 -1.58 6.87 -36.84 -0.25 -1.83 16 7 C 0.60 10.52 7.60 -12.84 -0.10 10.43 16 8 O -0.52 -9.80 14.49 5.20 0.08 -9.72 16 9 N -0.59 -10.16 2.89 -183.11 -0.53 -10.69 16 10 C 0.08 1.27 7.28 59.85 0.44 1.71 16 11 C 0.12 2.08 5.26 -4.04 -0.02 2.06 16 12 C 0.13 2.59 4.50 -66.86 -0.30 2.29 16 13 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 14 C -0.16 -2.97 7.86 -25.79 -0.20 -3.17 16 15 C 0.16 3.77 7.46 -2.85 -0.02 3.75 16 16 N -0.60 -14.82 3.59 -169.72 -0.61 -15.42 16 17 C -0.23 -5.99 10.28 -15.06 -0.15 -6.14 16 18 H 0.09 2.10 3.77 -52.49 -0.20 1.90 16 19 C -0.01 -0.24 5.50 -17.42 -0.10 -0.33 16 20 N -0.92 -26.82 11.46 55.49 0.64 -26.19 16 21 Si 0.90 21.36 29.55 -169.99 -5.02 16.33 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.31 6.57 -51.93 -0.34 0.96 16 28 H 0.25 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.05 0.73 7.32 -51.93 -0.38 0.35 16 30 H 0.10 1.61 6.46 -51.93 -0.34 1.27 16 31 H 0.07 1.13 6.83 -51.93 -0.35 0.77 16 32 H 0.09 1.53 7.78 -51.93 -0.40 1.12 16 33 H 0.08 1.30 7.53 -51.93 -0.39 0.91 16 34 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.79 7.28 -51.93 -0.38 1.42 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 313.71 15.07 4.73 4.73 Total: -1.00 -32.53 313.71 -5.94 -38.47 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.87 Total: 0.54 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -0.26 Total: 11.35 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.62 Total: -59.22 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.11 Total: -12.19 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.53 -5.94 -38.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085533302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.736 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds