Wall clock time and date at job start Tue Mar 31 2020 02:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29932 * 125.37843 * 2 1 4 4 C 1.36066 * 108.47530 * 180.02562 * 3 2 1 5 5 C 1.47425 * 126.44534 * 180.02562 * 4 3 2 6 6 O 1.21616 * 119.99752 * 185.80455 * 5 4 3 7 7 N 1.34780 * 120.00085 * 5.80334 * 5 4 3 8 8 C 1.46497 * 119.99877 * 5.17944 * 7 5 4 9 9 C 1.46493 * 119.99754 * 185.17879 * 7 5 4 10 10 C 1.53000 * 109.47288 * 275.00080 * 9 7 5 11 11 H 1.08992 * 112.74151 * 42.97706 * 10 9 7 12 12 C 1.53495 * 113.51882 * 272.18566 * 10 9 7 13 13 C 1.53759 * 83.25696 * 218.97276 * 12 10 9 14 14 N 1.47065 * 87.88701 * 26.24051 * 13 12 10 15 15 C 1.36939 * 136.05686 * 152.96826 * 14 13 12 16 16 H 1.07997 * 119.99516 * 174.85370 * 15 14 13 17 17 C 1.38810 * 119.99866 * 354.57365 * 15 14 13 18 18 N 1.31621 * 120.00321 * 0.27682 * 17 15 14 19 19 Si 1.86799 * 119.99755 * 180.28085 * 17 15 14 20 20 H 1.48506 * 109.47277 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47430 * 119.99970 * 19 17 15 22 22 H 1.48502 * 109.46907 * 240.00270 * 19 17 15 23 23 C 1.36084 * 107.10614 * 0.26460 * 4 3 2 24 24 O 1.34050 * 125.37841 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47288 * 89.99965 * 1 2 3 26 26 H 1.09002 * 109.46836 * 209.99381 * 1 2 3 27 27 H 1.08993 * 109.47404 * 329.99518 * 1 2 3 28 28 H 1.08996 * 109.47282 * 275.57700 * 8 7 5 29 29 H 1.09003 * 109.46819 * 35.57839 * 8 7 5 30 30 H 1.08997 * 109.46773 * 155.57269 * 8 7 5 31 31 H 1.09001 * 109.47135 * 155.00375 * 9 7 5 32 32 H 1.08996 * 109.47335 * 35.00154 * 9 7 5 33 33 H 1.09003 * 114.21032 * 332.72491 * 12 10 9 34 34 H 1.09003 * 114.20871 * 105.36142 * 12 10 9 35 35 H 1.08992 * 113.46563 * 271.50254 * 13 12 10 36 36 H 1.09004 * 113.55294 * 140.99085 * 13 12 10 37 37 H 0.96994 * 120.00178 * 179.97438 * 18 17 15 38 38 H 1.07998 * 126.52769 * 179.73269 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0006 5 6 4.7439 1.5438 -0.0003 6 8 5.8572 1.0662 -0.1074 7 7 4.5914 2.8777 0.1187 8 6 3.2624 3.4442 0.3614 9 6 5.7547 3.7609 0.0054 10 6 6.4491 3.8666 1.3646 11 1 6.5321 2.9052 1.8713 12 6 5.8836 4.9807 2.2563 13 6 7.3613 5.1832 2.6297 14 7 7.7138 4.6160 1.3194 15 6 8.7614 4.7304 0.4450 16 1 8.7954 4.1131 -0.4405 17 6 9.7765 5.6440 0.6938 18 7 9.7349 6.3963 1.7730 19 14 11.2015 5.8056 -0.5031 20 1 11.0139 4.8540 -1.6276 21 1 11.2499 7.1928 -1.0307 22 1 12.4740 5.4979 0.1980 23 6 3.5660 -0.6970 -0.0069 24 8 2.2831 -1.0930 -0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 2.7402 3.5653 -0.5876 29 1 2.6939 2.7738 1.0060 30 1 3.3643 4.4149 0.8466 31 1 5.4295 4.7508 -0.3144 32 1 6.4507 3.3527 -0.7274 33 1 5.4402 5.8112 1.7069 34 1 5.2594 4.6239 3.0756 35 1 7.6848 4.5688 3.4699 36 1 7.6433 6.2304 2.7395 37 1 10.4444 7.0344 1.9470 38 1 4.4361 -1.3367 -0.0131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085558088.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:18 Heat of formation + Delta-G solvation = 61.857643 kcal Electronic energy + Delta-G solvation = -21745.486664 eV Core-core repulsion = 18399.698849 eV Total energy + Delta-G solvation = -3345.787815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.60373 -39.58356 -37.86767 -35.39905 -34.78034 -32.46991 -32.08765 -28.70609 -27.99216 -27.83746 -26.28548 -23.98484 -23.36550 -22.17667 -21.42690 -19.56154 -19.13147 -17.56067 -17.13606 -16.72948 -16.41327 -15.91423 -15.25267 -14.70328 -14.42326 -14.08139 -13.93674 -13.55896 -13.47942 -13.25202 -12.88672 -12.73658 -12.57483 -12.43109 -11.78197 -11.49353 -11.38818 -11.05332 -10.83922 -10.70154 -10.59357 -10.34799 -9.96066 -9.74398 -9.71637 -9.41243 -9.16987 -8.71211 -8.18595 -6.78738 -5.68136 -3.01371 0.99526 1.88242 2.38457 3.13830 3.37903 3.44598 3.50273 3.52957 3.69684 4.51650 4.58780 4.62185 4.96588 5.00076 5.18881 5.27476 5.40343 5.42880 5.51055 5.53681 5.65897 5.71567 5.78121 5.91570 6.06753 6.16176 6.24649 6.36709 6.54152 6.63062 6.75932 6.94278 7.27946 7.32846 7.51412 7.62639 7.66948 8.07822 8.32447 9.12658 9.78898 10.73209 11.48625 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033440 B = 0.003824 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.120705 B = 7320.915705 C = 7770.848567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.186 3.814 3 N -0.456 5.456 4 C -0.061 4.061 5 C 0.590 3.410 6 O -0.530 6.530 7 N -0.592 5.592 8 C 0.088 3.912 9 C 0.118 3.882 10 C 0.135 3.865 11 H 0.045 0.955 12 C -0.166 4.166 13 C 0.148 3.852 14 N -0.600 5.600 15 C -0.212 4.212 16 H 0.080 0.920 17 C -0.009 4.009 18 N -0.920 5.920 19 Si 0.911 3.089 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.007 3.993 24 O -0.199 6.199 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.020 0.980 36 H 0.077 0.923 37 H 0.252 0.748 38 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.302 -11.320 -2.186 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.022 4.022 3 N -0.187 5.187 4 C -0.181 4.181 5 C 0.376 3.624 6 O -0.407 6.407 7 N -0.324 5.324 8 C -0.055 4.055 9 C -0.005 4.005 10 C 0.027 3.973 11 H 0.062 0.938 12 C -0.205 4.205 13 C 0.023 3.977 14 N -0.326 5.326 15 C -0.340 4.340 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.568 5.568 19 Si 0.741 3.259 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.218 1.218 23 C -0.067 4.067 24 O -0.086 6.086 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.121 0.879 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -20.612 -10.795 -2.385 23.390 hybrid contribution 1.212 -0.653 -0.505 1.466 sum -19.400 -11.448 -2.890 22.711 Atomic orbital electron populations 1.20286 0.81041 1.05273 1.04811 1.26452 0.96720 0.78599 1.00438 1.71035 1.00850 1.29131 1.17698 1.21911 0.92121 0.93049 1.10972 1.16844 0.85997 0.81921 0.77625 1.90869 1.24408 1.74801 1.50647 1.47705 1.09819 1.05358 1.69508 1.21944 0.82799 0.99233 1.01508 1.21950 0.85866 0.92688 1.00009 1.22421 0.87267 0.94801 0.92858 0.93763 1.23774 0.98505 0.98952 0.99249 1.22140 0.87880 0.99960 0.87758 1.45680 1.18672 1.50047 1.18190 1.18990 0.97887 1.16362 1.00713 0.90183 1.24778 0.98994 0.98719 0.98038 1.69838 1.34033 1.26351 1.26572 0.86051 0.82254 0.77403 0.80144 1.20399 1.21740 1.21823 1.25276 0.84636 0.95797 1.00977 1.84368 1.16810 1.37965 1.69433 0.88829 0.89297 0.87906 0.92776 0.89944 0.91378 0.89978 0.90222 0.90519 0.92951 0.96197 0.90476 0.93836 0.75357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.19 1.77 8.30 -13.08 -0.11 1.66 16 3 N -0.46 -5.56 8.10 -7.66 -0.06 -5.62 16 4 C -0.06 -0.86 6.60 -83.02 -0.55 -1.40 16 5 C 0.59 10.35 7.62 -12.52 -0.10 10.25 16 6 O -0.53 -11.10 16.61 5.26 0.09 -11.01 16 7 N -0.59 -9.90 2.88 -182.86 -0.53 -10.43 16 8 C 0.09 1.15 9.26 59.85 0.55 1.70 16 9 C 0.12 2.29 5.25 -4.05 -0.02 2.27 16 10 C 0.13 2.96 4.27 -72.40 -0.31 2.66 16 11 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 12 C -0.17 -3.28 8.03 -26.08 -0.21 -3.49 16 13 C 0.15 3.66 7.54 -8.37 -0.06 3.59 16 14 N -0.60 -16.09 3.64 -176.84 -0.64 -16.73 16 15 C -0.21 -6.18 10.55 -15.06 -0.16 -6.34 16 16 H 0.08 2.29 7.83 -52.49 -0.41 1.88 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 18 N -0.92 -28.05 11.42 55.49 0.63 -27.42 16 19 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 C 0.01 0.08 11.95 29.96 0.36 0.43 16 24 O -0.20 -2.04 10.73 6.51 0.07 -1.97 16 25 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 29 H 0.08 1.04 5.91 -51.93 -0.31 0.73 16 30 H 0.07 0.82 8.03 -51.93 -0.42 0.41 16 31 H 0.08 1.50 7.75 -51.93 -0.40 1.10 16 32 H 0.08 1.75 7.66 -51.93 -0.40 1.35 16 33 H 0.08 1.44 7.93 -51.93 -0.41 1.03 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 2.07 6.91 -51.93 -0.36 1.72 16 37 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.23 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 325.00 15.07 4.90 4.90 Total: -1.00 -35.47 325.00 -6.11 -41.58 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -5.22 Total: -2.28 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -0.32 Total: 11.11 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.60 Total: -60.21 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.16 Total: -12.99 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.47 -6.11 -41.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085558088.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.434 kcal (2) G-P(sol) polarization free energy of solvation -35.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds