Wall clock time and date at job start Tue Mar 31 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35311 * 128.04135 * 2 1 4 4 O 1.34019 * 106.67032 * 180.02562 * 3 2 1 5 5 N 1.20907 * 111.84090 * 359.70875 * 4 3 2 6 6 C 1.30984 * 111.44405 * 0.47736 * 5 4 3 7 7 C 1.48328 * 126.94142 * 179.79550 * 6 5 4 8 8 O 1.21493 * 120.00141 * 185.14903 * 7 6 5 9 9 N 1.34776 * 119.99749 * 5.15766 * 7 6 5 10 10 C 1.46495 * 120.00256 * 5.71279 * 9 7 6 11 11 C 1.46500 * 119.99863 * 185.71464 * 9 7 6 12 12 C 1.53009 * 109.47122 * 96.77129 * 11 9 7 13 13 H 1.08994 * 112.96352 * 49.79507 * 12 11 9 14 14 C 1.53944 * 113.77029 * 181.48176 * 12 11 9 15 15 C 1.53944 * 86.29080 * 137.90669 * 14 12 11 16 16 N 1.47578 * 86.11662 * 336.39064 * 15 14 12 17 17 C 1.36936 * 134.49246 * 204.64281 * 16 15 14 18 18 H 1.08003 * 120.00134 * 189.98074 * 17 16 15 19 19 C 1.38818 * 120.00099 * 9.98014 * 17 16 15 20 20 N 1.31620 * 119.99521 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99935 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47281 * 359.97438 * 21 19 17 23 23 H 1.48510 * 109.47182 * 120.00055 * 21 19 17 24 24 H 1.48504 * 109.47012 * 239.99515 * 21 19 17 25 25 H 1.09000 * 109.47474 * 269.98381 * 1 2 3 26 26 H 1.09003 * 109.46574 * 29.97491 * 1 2 3 27 27 H 1.09000 * 109.47368 * 149.97467 * 1 2 3 28 28 H 1.08000 * 126.66622 * 0.03520 * 3 2 1 29 29 H 1.08996 * 109.47107 * 275.48425 * 10 9 7 30 30 H 1.08999 * 109.46912 * 35.48738 * 10 9 7 31 31 H 1.08998 * 109.47247 * 155.48753 * 10 9 7 32 32 H 1.08993 * 109.47617 * 216.76846 * 11 9 7 33 33 H 1.08995 * 109.47245 * 336.77343 * 11 9 7 34 34 H 1.08996 * 113.73790 * 252.25281 * 14 12 11 35 35 H 1.08999 * 113.74369 * 23.44809 * 14 12 11 36 36 H 1.08994 * 113.76882 * 90.69224 * 15 14 12 37 37 H 1.08999 * 113.76527 * 221.97925 * 15 14 12 38 38 H 0.97005 * 119.99205 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5889 0.5773 -0.0006 5 7 3.5988 -0.6317 0.0048 6 6 2.3837 -1.1206 -0.0005 7 6 1.9991 -2.5532 -0.0008 8 8 0.8300 -2.8683 -0.1005 9 7 2.9466 -3.5052 0.1097 10 6 4.3403 -3.1266 0.3555 11 6 2.5829 -4.9188 -0.0161 12 6 2.8499 -5.3887 -1.4475 13 1 3.8470 -5.1277 -1.8018 14 6 2.4665 -6.8581 -1.6999 15 6 1.8855 -6.3721 -3.0400 16 7 1.7713 -5.0492 -2.3959 17 6 0.9817 -3.9487 -2.5973 18 1 1.2019 -3.0247 -2.0834 19 6 -0.1018 -4.0207 -3.4622 20 7 -0.3698 -5.1466 -4.0889 21 14 -1.1784 -2.5192 -3.7374 22 1 -0.6682 -1.3880 -2.9219 23 1 -1.1500 -2.1464 -5.1747 24 1 -2.5735 -2.8299 -3.3343 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3632 0.8903 -0.5135 27 1 -0.3634 -0.8897 -0.5142 28 1 2.0560 2.1074 0.0005 29 1 4.8252 -2.8908 -0.5917 30 1 4.3700 -2.2529 1.0064 31 1 4.8627 -3.9546 0.8347 32 1 3.1796 -5.5107 0.6778 33 1 1.5253 -5.0438 0.2161 34 1 3.3235 -7.5228 -1.8084 35 1 1.7167 -7.2412 -1.0076 36 1 2.5987 -6.3995 -3.8638 37 1 0.9263 -6.8239 -3.2926 38 1 -1.1267 -5.1968 -4.6935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085913450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:52 Heat of formation + Delta-G solvation = 104.981792 kcal Electronic energy + Delta-G solvation = -23013.051624 eV Core-core repulsion = 19669.133813 eV Total energy + Delta-G solvation = -3343.917811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.92966 -39.47348 -37.59118 -35.12696 -34.48239 -32.26396 -31.90740 -28.59310 -27.98812 -27.68502 -26.32126 -24.16659 -23.18829 -22.01134 -21.48134 -19.53171 -18.96532 -17.68300 -17.43289 -16.75494 -16.34422 -15.64627 -15.13658 -14.59491 -14.08295 -13.78721 -13.60693 -13.29790 -13.16553 -13.11038 -12.69801 -12.57780 -12.50040 -11.81458 -11.48143 -11.32515 -11.09904 -10.97962 -10.80259 -10.59348 -10.40624 -10.07775 -9.89871 -9.57218 -9.54855 -9.32334 -9.18105 -8.55996 -8.11173 -6.65273 -5.55225 -2.87211 1.33785 1.85243 3.12719 3.31693 3.50227 3.55032 3.58606 3.64015 4.15447 4.59574 4.68069 4.96877 5.16944 5.23692 5.39996 5.41817 5.57718 5.70952 5.73143 5.75437 5.79925 5.88792 5.95296 5.97327 6.03391 6.07849 6.37596 6.46842 6.50607 6.74533 6.79693 6.98402 7.38401 7.56745 7.73327 7.81492 8.13713 8.22091 8.61384 9.27244 9.93414 10.78818 11.60929 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.008608 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.951422 B = 3251.877525 C = 4652.578716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.147 4.147 3 C -0.077 4.077 4 O 0.110 5.890 5 N -0.333 5.333 6 C -0.014 4.014 7 C 0.585 3.415 8 O -0.477 6.477 9 N -0.600 5.600 10 C 0.085 3.915 11 C 0.117 3.883 12 C 0.123 3.877 13 H 0.042 0.958 14 C -0.156 4.156 15 C 0.147 3.853 16 N -0.597 5.597 17 C -0.192 4.192 18 H 0.085 0.915 19 C -0.013 4.013 20 N -0.927 5.927 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.297 1.297 24 H -0.291 1.291 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.219 0.781 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.019 0.981 37 H 0.083 0.917 38 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.006 8.033 10.912 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.151 4.151 3 C -0.157 4.157 4 O 0.038 5.962 5 N -0.037 5.037 6 C -0.173 4.173 7 C 0.369 3.631 8 O -0.348 6.348 9 N -0.334 5.334 10 C -0.059 4.059 11 C -0.006 4.006 12 C 0.015 3.985 13 H 0.060 0.940 14 C -0.195 4.195 15 C 0.022 3.978 16 N -0.322 5.322 17 C -0.320 4.320 18 H 0.103 0.897 19 C -0.208 4.208 20 N -0.576 5.576 21 Si 0.734 3.266 22 H -0.202 1.202 23 H -0.225 1.225 24 H -0.219 1.219 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.236 0.764 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.037 0.963 37 H 0.101 0.899 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.277 7.435 10.734 15.460 hybrid contribution -1.148 1.147 -0.482 1.693 sum 7.129 8.582 10.252 15.152 Atomic orbital electron populations 1.20294 0.86776 1.04543 1.02808 1.21390 0.99134 0.90288 1.04331 1.25669 0.82634 1.01065 1.06379 1.84744 1.29403 1.15779 1.66289 1.74299 1.21638 0.91149 1.16602 1.23690 0.89159 0.97744 1.06715 1.16763 0.85766 0.81966 0.78562 1.90882 1.17093 1.80640 1.46199 1.47513 1.07801 1.06851 1.71282 1.21842 0.81921 1.00713 1.01390 1.22016 1.02667 0.78355 0.97551 1.22681 0.93015 0.92727 0.90117 0.94032 1.23762 0.99634 0.94918 1.01140 1.22348 0.98968 0.85526 0.90974 1.46011 1.36995 1.14859 1.34360 1.19293 1.02938 0.89111 1.20651 0.89724 1.24732 0.98342 0.97047 1.00699 1.69824 1.30270 1.24565 1.32917 0.86143 0.80883 0.82700 0.76840 1.20154 1.22491 1.21870 0.90787 0.91303 0.88652 0.76436 0.92700 0.90909 0.91344 0.91378 0.88603 0.93250 0.90641 0.96308 0.89907 0.94229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 10.06 36.01 0.36 -0.92 16 2 C -0.15 -2.26 6.34 -104.11 -0.66 -2.92 16 3 C -0.08 -0.88 12.24 29.69 0.36 -0.52 16 4 O 0.11 1.46 11.18 17.24 0.19 1.66 16 5 N -0.33 -5.31 8.96 33.30 0.30 -5.01 16 6 C -0.01 -0.25 6.81 -82.53 -0.56 -0.81 16 7 C 0.58 12.07 6.09 -12.11 -0.07 11.99 16 8 O -0.48 -11.40 12.11 5.37 0.07 -11.34 16 9 N -0.60 -11.05 2.88 -182.52 -0.52 -11.57 16 10 C 0.08 1.23 9.36 59.84 0.56 1.79 16 11 C 0.12 2.17 5.41 -4.04 -0.02 2.15 16 12 C 0.12 2.56 4.53 -66.86 -0.30 2.26 16 13 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 14 C -0.16 -3.01 7.86 -25.81 -0.20 -3.22 16 15 C 0.15 3.61 7.78 -2.98 -0.02 3.58 16 16 N -0.60 -15.81 3.56 -170.76 -0.61 -16.42 16 17 C -0.19 -5.63 9.21 -15.06 -0.14 -5.77 16 18 H 0.09 2.49 4.46 -52.48 -0.23 2.26 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.91 11.26 55.49 0.62 -28.28 16 21 Si 0.90 23.90 29.55 -169.99 -5.02 18.88 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 24 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.81 6.81 -51.93 -0.35 1.46 16 28 H 0.22 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.02 5.98 -51.93 -0.31 0.71 16 31 H 0.07 0.79 7.91 -51.93 -0.41 0.38 16 32 H 0.07 1.00 7.97 -51.93 -0.41 0.58 16 33 H 0.10 2.05 7.17 -51.93 -0.37 1.68 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 2.26 6.77 -51.93 -0.35 1.91 16 38 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 312.39 15.07 4.71 4.71 Total: -1.00 -35.35 312.39 -6.03 -41.37 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.96 Total: -1.11 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -0.80 Total: 7.12 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.21 Total: -61.28 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.26 Total: -9.68 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.02 Total: 18.88 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.35 -6.03 -41.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085913450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.354 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds