Wall clock time and date at job start Tue Mar 31 2020 03:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33688 * 126.27393 * 2 1 4 4 C 1.30622 * 108.99720 * 179.97438 * 3 2 1 5 5 O 1.33665 * 109.15319 * 359.75203 * 4 3 2 6 6 C 1.35350 * 107.68085 * 0.40023 * 5 4 3 7 7 C 1.46726 * 126.63991 * 179.87420 * 6 5 4 8 8 O 1.21685 * 119.99517 * 179.68422 * 7 6 5 9 9 N 1.34777 * 120.00264 * 359.68872 * 7 6 5 10 10 C 1.46497 * 120.00242 * 179.97438 * 9 7 6 11 11 C 1.52990 * 109.47171 * 179.97438 * 10 9 7 12 12 H 1.09000 * 112.90908 * 43.75361 * 11 10 9 13 13 C 1.53786 * 113.61464 * 174.99989 * 11 10 9 14 14 C 1.53781 * 87.17350 * 140.02626 * 13 11 10 15 15 H 1.08999 * 113.61567 * 89.07405 * 14 13 11 16 16 N 1.46493 * 113.61552 * 219.97837 * 14 13 11 17 17 C 1.36942 * 120.00387 * 205.00019 * 16 14 13 18 18 H 1.08003 * 119.99659 * 0.02562 * 17 16 14 19 19 C 1.38801 * 120.00282 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00286 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00192 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46743 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47063 * 119.99968 * 21 19 17 24 24 H 1.48502 * 109.47348 * 240.00198 * 21 19 17 25 25 C 1.53781 * 87.08070 * 334.52830 * 14 13 11 26 26 H 1.09002 * 109.46722 * 270.02341 * 1 2 3 27 27 H 1.09001 * 109.47346 * 30.02159 * 1 2 3 28 28 H 1.09000 * 109.47646 * 150.02610 * 1 2 3 29 29 H 1.08002 * 125.42377 * 180.02562 * 4 3 2 30 30 H 0.97003 * 119.99582 * 359.97438 * 9 7 6 31 31 H 1.09007 * 109.46596 * 59.99839 * 10 9 7 32 32 H 1.08994 * 109.47005 * 300.00149 * 10 9 7 33 33 H 1.09002 * 113.61357 * 25.43543 * 13 11 10 34 34 H 1.09002 * 113.61608 * 254.61705 * 13 11 10 35 35 H 0.97006 * 120.00380 * 24.99977 * 16 14 13 36 36 H 0.96995 * 120.00493 * 180.02562 * 20 19 17 37 37 H 1.09005 * 113.61471 * 139.98321 * 25 14 13 38 38 H 1.08996 * 113.61178 * 270.79663 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6899 0.0006 5 8 3.5890 -0.6461 0.0064 6 6 2.3136 -1.0992 0.0005 7 6 1.8826 -2.5017 0.0012 8 8 0.6965 -2.7737 0.0013 9 7 2.8003 -3.4888 0.0018 10 6 2.3700 -4.8891 0.0030 11 6 3.5990 -5.8003 0.0029 12 1 4.3722 -5.4699 0.6965 13 6 3.2579 -7.2947 0.1269 14 6 4.3690 -7.5558 -0.9037 15 1 5.3523 -7.7044 -0.4576 16 7 4.0271 -8.5867 -1.8868 17 6 5.0201 -9.2878 -2.5173 18 1 6.0554 -9.0810 -2.2896 19 6 4.6962 -10.2650 -3.4483 20 7 3.4345 -10.5175 -3.7255 21 14 6.0508 -11.2209 -4.3090 22 1 7.3733 -10.7501 -3.8246 23 1 5.9016 -12.6681 -4.0110 24 1 5.9545 -11.0049 -5.7751 25 6 4.1311 -6.1221 -1.4065 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5134 29 1 4.4044 1.3443 0.0011 30 1 3.7458 -3.2719 0.0015 31 1 1.7719 -5.0861 -0.8867 32 1 1.7723 -5.0847 0.8932 33 1 2.2604 -7.5462 -0.2333 34 1 3.4696 -7.7106 1.1120 35 1 3.0972 -8.7728 -2.0911 36 1 3.2081 -11.2006 -4.3758 37 1 5.0483 -5.5901 -1.6591 38 1 3.3733 -6.0533 -2.1870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086056030.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:30 Heat of formation + Delta-G solvation = 13.708687 kcal Electronic energy + Delta-G solvation = -20776.140208 eV Core-core repulsion = 17428.264497 eV Total energy + Delta-G solvation = -3347.875710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.76658 -39.82907 -38.47913 -35.80561 -34.73523 -33.33547 -31.96023 -30.35844 -28.66341 -27.02628 -25.12864 -24.29275 -23.63584 -22.06351 -21.11558 -20.84243 -19.22878 -18.34651 -17.23126 -17.08022 -16.77156 -16.28916 -15.37117 -15.02782 -14.84805 -14.64934 -14.18539 -13.60274 -13.57632 -13.36075 -13.28857 -12.96521 -12.47754 -11.97203 -11.86917 -11.46926 -11.43891 -11.28202 -11.21802 -10.88052 -10.60810 -10.43381 -10.16650 -10.06067 -9.87235 -9.56275 -9.41171 -9.06887 -8.90103 -6.99137 -5.80840 -3.09916 0.51111 2.09149 2.14056 2.84788 2.99688 3.40697 3.46266 3.48651 3.69640 4.40286 4.47374 4.55901 4.89033 4.91005 5.10792 5.15677 5.17913 5.39968 5.42994 5.44755 5.55825 5.62872 5.73858 5.76349 5.87604 5.98964 6.05279 6.13045 6.25181 6.30663 6.35956 6.55225 6.77519 7.06671 7.07620 7.31150 7.67146 7.83957 8.37707 9.48865 10.06796 10.40865 11.41583 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034015 B = 0.002767 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.959005 B =10116.418034 C =10355.687570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.078 3.922 3 N -0.495 5.495 4 C 0.201 3.799 5 O -0.191 6.191 6 C -0.113 4.113 7 C 0.605 3.395 8 O -0.515 6.515 9 N -0.710 5.710 10 C 0.131 3.869 11 C -0.129 4.129 12 H 0.089 0.911 13 C -0.141 4.141 14 C 0.166 3.834 15 H 0.076 0.924 16 N -0.713 5.713 17 C -0.244 4.244 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.162 4.162 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.257 0.743 30 H 0.405 0.595 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.054 0.946 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.570 21.414 10.151 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 N -0.224 5.224 4 C -0.024 4.024 5 O -0.077 6.077 6 C -0.169 4.169 7 C 0.389 3.611 8 O -0.393 6.393 9 N -0.360 5.360 10 C 0.008 3.992 11 C -0.148 4.148 12 H 0.107 0.893 13 C -0.181 4.181 14 C 0.054 3.946 15 H 0.094 0.906 16 N -0.351 5.351 17 C -0.375 4.375 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.203 4.203 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.272 0.728 30 H 0.240 0.760 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.220 0.780 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.384 21.632 10.064 23.898 hybrid contribution 1.345 -0.907 -0.609 1.733 sum -0.039 20.725 9.455 22.780 Atomic orbital electron populations 1.20409 0.85241 1.04507 1.03763 1.22090 0.98469 0.86330 0.97714 1.70359 1.01367 1.31480 1.19185 1.28350 0.97640 0.79428 0.96976 1.84499 1.29657 1.24466 1.69064 1.23013 0.81398 0.96435 1.16015 1.16326 0.85904 0.81329 0.77491 1.90873 1.15720 1.81852 1.50828 1.45976 1.09785 1.06723 1.73564 1.21569 0.97253 0.77705 1.02628 1.22700 0.96584 0.95435 1.00081 0.89263 1.23450 1.01403 0.92789 1.00482 1.21506 0.95785 0.87642 0.89684 0.90631 1.42423 1.06722 1.40562 1.45364 1.19343 0.88563 1.13004 1.16619 0.91045 1.24774 0.96197 0.99795 1.00168 1.69667 1.15413 1.35609 1.37284 0.86123 0.80991 0.79777 0.79317 1.20532 1.21823 1.21834 1.24019 1.00448 1.01303 0.94510 0.89963 0.90446 0.88506 0.72764 0.76009 0.90649 0.91172 0.90010 0.91911 0.78042 0.93466 0.92742 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 9.87 36.00 0.36 -0.44 16 2 C 0.08 0.88 7.16 -82.47 -0.59 0.29 16 3 N -0.49 -5.14 11.26 -10.88 -0.12 -5.26 16 4 C 0.20 1.47 13.21 52.25 0.69 2.16 16 5 O -0.19 -1.79 10.57 4.40 0.05 -1.74 16 6 C -0.11 -1.30 7.18 -36.84 -0.26 -1.57 16 7 C 0.60 7.75 7.79 -12.83 -0.10 7.65 16 8 O -0.51 -7.84 14.79 5.20 0.08 -7.76 16 9 N -0.71 -8.07 5.55 -61.61 -0.34 -8.41 16 10 C 0.13 1.63 5.52 -4.05 -0.02 1.60 16 11 C -0.13 -1.64 3.76 -89.67 -0.34 -1.98 16 12 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 13 C -0.14 -2.16 7.39 -25.92 -0.19 -2.36 16 14 C 0.17 3.13 4.48 -67.12 -0.30 2.83 16 15 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 16 N -0.71 -17.55 5.40 -52.64 -0.28 -17.83 16 17 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 21 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C -0.16 -2.60 7.44 -25.78 -0.19 -2.79 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.10 1.04 6.47 -51.93 -0.34 0.71 16 29 H 0.26 0.43 8.06 -52.49 -0.42 0.00 16 30 H 0.41 3.86 8.27 -40.82 -0.34 3.52 16 31 H 0.08 1.05 7.85 -51.93 -0.41 0.65 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.39 10.11 7.92 -40.82 -0.32 9.78 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.41 7.91 -51.93 -0.41 0.99 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -32.99 328.42 -6.34 -39.32 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.16 Total: 8.77 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.20 Total: -1.91 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.02 Total: -58.77 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.12 Total: -9.50 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.99 -6.34 -39.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086056030.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.030 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds