Wall clock time and date at job start Tue Mar 31 2020 01:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35313 * 126.66660 * 2 1 4 4 C 1.42271 * 103.92439 * 180.02562 * 3 2 1 5 5 C 1.48332 * 126.94341 * 180.02562 * 4 3 2 6 6 O 1.21490 * 119.99610 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00144 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99911 * 180.02562 * 7 5 4 9 9 H 1.08996 * 110.64342 * 328.13372 * 8 7 5 10 10 C 1.55155 * 110.87451 * 91.38617 * 8 7 5 11 11 C 1.54910 * 101.58186 * 153.93507 * 10 8 7 12 12 N 1.47426 * 104.83209 * 322.98941 * 11 10 8 13 13 C 1.36936 * 125.64452 * 204.14875 * 12 11 10 14 14 H 1.08005 * 119.99808 * 179.97438 * 13 12 11 15 15 C 1.38810 * 120.00640 * 359.97438 * 13 12 11 16 16 N 1.31625 * 119.99418 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00271 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47005 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46987 * 120.00070 * 17 15 13 20 20 H 1.48502 * 109.46685 * 240.00024 * 17 15 13 21 21 C 1.47015 * 108.70225 * 24.12927 * 12 11 10 22 22 H 1.09004 * 109.88121 * 239.52440 * 21 12 11 23 23 C 1.53007 * 109.88376 * 118.51318 * 21 12 11 24 24 N 1.30994 * 106.12092 * 0.26038 * 4 3 2 25 25 O 1.20904 * 111.43362 * 359.53954 * 24 4 3 26 26 H 1.09005 * 109.46741 * 89.99783 * 1 2 3 27 27 H 1.08996 * 109.47362 * 209.99839 * 1 2 3 28 28 H 1.09005 * 109.46978 * 330.00303 * 1 2 3 29 29 H 1.07998 * 128.04298 * 359.97438 * 3 2 1 30 30 H 0.97001 * 119.99657 * 359.97438 * 7 5 4 31 31 H 1.08999 * 111.00406 * 35.86119 * 10 8 7 32 32 H 1.09005 * 111.00498 * 272.00635 * 10 8 7 33 33 H 1.08998 * 110.36709 * 204.15043 * 11 10 8 34 34 H 1.09005 * 110.36466 * 81.82577 * 11 10 8 35 35 H 0.96997 * 119.99243 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.46997 * 61.45311 * 23 21 12 37 37 H 1.08998 * 109.46806 * 181.44978 * 23 21 12 38 38 H 1.08997 * 109.46615 * 301.45041 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5354 -0.0006 5 6 4.9076 1.2841 -0.0003 6 8 4.9009 2.4990 0.0000 7 7 6.0785 0.6166 -0.0015 8 6 7.3432 1.3561 -0.0007 9 1 7.2375 2.2987 -0.5378 10 6 7.8384 1.6028 1.4488 11 6 9.3677 1.7307 1.2375 12 7 9.6862 0.7505 0.1833 13 6 10.9080 0.1669 -0.0209 14 1 11.0399 -0.5429 -0.8242 15 6 11.9770 0.4874 0.8045 16 7 11.8164 1.3528 1.7832 17 14 13.6439 -0.3083 0.5255 18 1 13.5617 -1.2373 -0.6302 19 1 14.6538 0.7436 0.2448 20 1 14.0410 -1.0643 1.7404 21 6 8.4748 0.5033 -0.6121 22 1 8.2096 -0.5530 -0.5650 23 6 8.7138 0.9153 -2.0661 24 7 3.4761 -0.7658 -0.0066 25 8 2.3073 -1.0749 -0.0006 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8901 0.5138 29 1 2.0302 2.1271 -0.0004 30 1 6.0838 -0.3534 -0.0022 31 1 7.6024 0.7550 2.0919 32 1 7.4213 2.5255 1.8525 33 1 9.8995 1.4853 2.1568 34 1 9.6222 2.7381 0.9083 35 1 12.5635 1.5770 2.3597 36 1 9.5219 0.3160 -2.4854 37 1 7.8038 0.7533 -2.6439 38 1 8.9858 1.9701 -2.1047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088458367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:40 Heat of formation + Delta-G solvation = 30.245976 kcal Electronic energy + Delta-G solvation = -21593.290700 eV Core-core repulsion = 18246.132100 eV Total energy + Delta-G solvation = -3347.158600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.16524 -41.11766 -39.26913 -35.79343 -35.19594 -34.43676 -33.69168 -32.12399 -30.56551 -28.68731 -27.22778 -25.95998 -25.10113 -23.72549 -22.16395 -21.68136 -20.97842 -18.93221 -18.76574 -18.56534 -18.00755 -17.42130 -16.68689 -16.06821 -15.79500 -15.70636 -15.24082 -14.81945 -14.52200 -14.37724 -14.06057 -13.92803 -13.78844 -13.33044 -13.28793 -12.98329 -12.78241 -12.67643 -12.42429 -12.33760 -12.22631 -11.97009 -11.63001 -11.59065 -11.53210 -11.44378 -10.76579 -10.39709 -10.22378 -8.93552 -7.77320 -5.22652 0.00896 0.66747 1.47421 1.48082 1.58190 1.71089 1.97430 2.07968 2.49382 2.82744 3.33334 3.45316 3.60628 3.76121 3.86354 3.93141 4.08474 4.15624 4.34973 4.43583 4.55299 4.57782 4.74067 4.80365 4.84087 4.84811 4.88558 4.96555 5.02988 5.25936 5.27543 5.46105 5.48577 5.56337 5.76603 6.21978 6.27598 6.83793 7.02319 7.08797 7.75384 8.38887 9.24999 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.040204 B = 0.003454 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.285684 B = 8104.180585 C = 8260.411293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.013 4.013 3 C -0.200 4.200 4 C -0.046 4.046 5 C 0.598 3.402 6 O -0.555 6.555 7 N -0.691 5.691 8 C 0.150 3.850 9 H 0.091 0.909 10 C -0.140 4.140 11 C 0.159 3.841 12 N -0.613 5.613 13 C -0.228 4.228 14 H 0.085 0.915 15 C -0.068 4.068 16 N -0.950 5.950 17 Si 0.980 3.020 18 H -0.266 1.266 19 H -0.295 1.295 20 H -0.292 1.292 21 C 0.150 3.850 22 H 0.046 0.954 23 C -0.146 4.146 24 N -0.350 5.350 25 O 0.126 5.874 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.193 0.807 30 H 0.412 0.588 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.079 0.921 34 H -0.009 1.009 35 H 0.247 0.753 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.312 -3.711 -4.195 24.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 C -0.223 4.223 4 C -0.203 4.203 5 C 0.383 3.617 6 O -0.432 6.432 7 N -0.342 5.342 8 C 0.045 3.955 9 H 0.109 0.891 10 C -0.179 4.179 11 C 0.033 3.967 12 N -0.339 5.339 13 C -0.356 4.356 14 H 0.102 0.898 15 C -0.260 4.260 16 N -0.600 5.600 17 Si 0.809 3.191 18 H -0.190 1.190 19 H -0.222 1.222 20 H -0.219 1.219 21 C 0.043 3.957 22 H 0.063 0.937 23 C -0.205 4.205 24 N -0.050 5.050 25 O 0.049 5.951 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.210 0.790 30 H 0.249 0.751 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.009 0.991 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -23.157 -3.846 -4.142 23.836 hybrid contribution 1.177 0.294 0.084 1.216 sum -21.980 -3.552 -4.058 22.632 Atomic orbital electron populations 1.20683 0.79607 1.06630 1.06034 1.25291 0.98141 0.83850 1.00302 1.22693 0.88693 1.02899 1.08017 1.23413 0.96747 0.90684 1.09506 1.17153 0.82222 0.86211 0.76116 1.90769 1.87245 1.13764 1.51385 1.45788 1.04602 1.10937 1.72867 1.21892 0.81538 0.95205 0.96903 0.89127 1.23235 0.97269 1.01488 0.95937 1.21680 0.90450 0.90227 0.94328 1.44722 1.06380 1.49088 1.33694 1.19423 0.86103 1.18449 1.11672 0.89765 1.25624 1.01686 1.00427 0.98308 1.70042 1.30561 1.38080 1.21342 0.84980 0.79389 0.77401 0.77375 1.18988 1.22178 1.21947 1.21171 0.86287 0.96675 0.91521 0.93655 1.22112 1.01105 1.00813 0.96487 1.74197 0.98431 1.15401 1.16932 1.84746 1.10747 1.34275 1.65343 0.87257 0.87951 0.86929 0.78966 0.75110 0.91449 0.90937 0.90269 0.99123 0.94355 0.93164 0.91437 0.94004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.23 10.45 71.24 0.74 0.51 16 2 C -0.01 -0.18 7.47 25.01 0.19 0.01 16 3 C -0.20 -3.91 10.92 22.60 0.25 -3.67 16 4 C -0.05 -1.23 7.19 42.96 0.31 -0.92 16 5 C 0.60 19.43 7.85 86.93 0.68 20.11 16 6 O -0.55 -21.02 16.60 -3.68 -0.06 -21.08 16 7 N -0.69 -22.21 5.18 -439.33 -2.28 -24.48 16 8 C 0.15 5.62 2.84 46.18 0.13 5.75 16 9 H 0.09 3.58 7.26 -2.39 -0.02 3.56 16 10 C -0.14 -5.72 6.77 31.99 0.22 -5.50 16 11 C 0.16 8.06 5.89 86.86 0.51 8.57 16 12 N -0.61 -31.36 3.13 -668.24 -2.09 -33.45 16 13 C -0.23 -12.57 9.87 84.03 0.83 -11.74 16 14 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 15 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 16 N -0.95 -56.88 10.09 21.65 0.22 -56.66 16 17 Si 0.98 45.73 29.55 68.60 2.03 47.76 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 21 C 0.15 6.15 3.47 45.35 0.16 6.31 16 22 H 0.05 1.80 7.72 -2.39 -0.02 1.78 16 23 C -0.15 -5.43 9.15 71.98 0.66 -4.77 16 24 N -0.35 -8.81 11.84 -49.51 -0.59 -9.39 16 25 O 0.13 2.47 11.18 71.92 0.80 3.27 16 26 H 0.11 0.05 8.14 -2.38 -0.02 0.03 16 27 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 29 H 0.19 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.41 12.06 8.13 -92.71 -0.75 11.31 16 31 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 33 H 0.08 4.54 5.87 -2.39 -0.01 4.53 16 34 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 35 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.05 1.91 8.02 -2.39 -0.02 1.89 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -70.33 322.58 3.50 -66.83 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.33 Total: 15.93 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 5.14 Total: 11.27 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -4.73 Total: -123.98 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.74 Total: -17.81 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -70.33 3.50 -66.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088458367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.076 kcal (2) G-P(sol) polarization free energy of solvation -70.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds