Wall clock time and date at job start Tue Mar 31 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29937 * 125.37458 * 2 1 4 4 C 1.36075 * 108.47349 * 180.16602 * 3 2 1 5 5 C 1.47411 * 126.44872 * 179.82430 * 4 3 2 6 6 O 1.21616 * 119.99577 * 179.68964 * 5 4 3 7 7 N 1.34777 * 120.00485 * 359.69027 * 5 4 3 8 8 C 1.46493 * 120.00328 * 180.02562 * 7 5 4 9 9 H 1.09007 * 110.77996 * 328.23338 * 8 7 5 10 10 C 1.55155 * 110.72564 * 91.47427 * 8 7 5 11 11 C 1.54906 * 101.58328 * 153.86435 * 10 8 7 12 12 N 1.47418 * 104.83216 * 322.99015 * 11 10 8 13 13 C 1.36944 * 125.64693 * 204.16051 * 12 11 10 14 14 H 1.08002 * 119.99783 * 179.97438 * 13 12 11 15 15 C 1.38808 * 120.00111 * 359.96626 * 13 12 11 16 16 N 1.31620 * 119.99980 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00090 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47058 * 89.99814 * 17 15 13 19 19 H 1.48494 * 109.47192 * 209.99787 * 17 15 13 20 20 H 1.48501 * 109.47020 * 330.00155 * 17 15 13 21 21 C 1.47019 * 108.70564 * 24.13346 * 12 11 10 22 22 H 1.09008 * 109.87958 * 239.36823 * 21 12 11 23 23 C 1.52997 * 109.88752 * 118.35477 * 21 12 11 24 24 C 1.36098 * 107.09680 * 359.56095 * 4 3 2 25 25 O 1.34043 * 125.37656 * 179.67796 * 2 1 3 26 26 H 1.08988 * 109.47060 * 180.29530 * 1 2 3 27 27 H 1.09005 * 109.46712 * 300.30195 * 1 2 3 28 28 H 1.09004 * 109.46608 * 60.29498 * 1 2 3 29 29 H 0.97001 * 119.99257 * 359.97438 * 7 5 4 30 30 H 1.09003 * 110.99799 * 35.78807 * 10 8 7 31 31 H 1.09001 * 111.00303 * 271.94261 * 10 8 7 32 32 H 1.09001 * 110.36496 * 204.15090 * 11 10 8 33 33 H 1.08995 * 110.45868 * 81.88076 * 11 10 8 34 34 H 0.97002 * 120.00225 * 180.02562 * 16 15 13 35 35 H 1.09002 * 109.47153 * 61.45267 * 23 21 12 36 36 H 1.09001 * 109.46832 * 301.45458 * 23 21 12 37 37 H 1.09004 * 109.47261 * 181.45439 * 23 21 12 38 38 H 1.08002 * 126.51919 * 180.28408 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5613 0.6639 -0.0037 5 6 4.7439 1.5438 -0.0087 6 8 5.8605 1.0618 -0.0060 7 7 4.5879 2.8825 -0.0162 8 6 5.7633 3.7569 -0.0217 9 1 6.5910 3.2956 0.5171 10 6 6.1808 4.1065 -1.4745 11 6 6.8956 5.4661 -1.2742 12 7 6.1195 6.1492 -0.2233 13 6 6.0590 7.5034 -0.0287 14 1 5.4585 7.9073 0.7730 15 6 6.7695 8.3567 -0.8615 16 7 7.5018 7.8643 -1.8381 17 14 6.6864 10.2039 -0.5965 18 1 7.7647 10.6191 0.3364 19 1 6.8621 10.8990 -1.8969 20 1 5.3664 10.5620 -0.0181 21 6 5.4208 5.1359 0.5807 22 1 4.3448 5.3052 0.5369 23 6 5.8991 5.2029 2.0325 24 6 3.5659 -0.6971 0.0039 25 8 2.2831 -1.0929 0.0061 26 1 -0.3633 -1.0275 0.0053 27 1 -0.3633 0.5186 0.8873 28 1 -0.3633 0.5093 -0.8927 29 1 3.6973 3.2669 -0.0187 30 1 5.3068 4.2153 -2.1167 31 1 6.8667 3.3596 -1.8743 32 1 6.8754 6.0449 -2.1976 33 1 7.9236 5.3115 -0.9467 34 1 7.9987 8.4606 -2.4199 35 1 5.6656 6.1836 2.4471 36 1 6.9763 5.0405 2.0679 37 1 5.3960 4.4323 2.6167 38 1 4.4361 -1.3368 0.0079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088534608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:32 Heat of formation + Delta-G solvation = -12.976729 kcal Electronic energy + Delta-G solvation = -21626.022807 eV Core-core repulsion = 18276.989931 eV Total energy + Delta-G solvation = -3349.032877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.44997 -40.96185 -39.18376 -36.02333 -35.58546 -33.83847 -33.09527 -32.08261 -30.53065 -28.79215 -26.93452 -25.89948 -24.71867 -22.62879 -22.09248 -21.64129 -21.24116 -19.18247 -18.71051 -17.94023 -17.61399 -17.31229 -16.66095 -15.93694 -15.75159 -15.69043 -15.25489 -14.84888 -14.67021 -14.36053 -14.02130 -13.88673 -13.74590 -13.26611 -13.25618 -12.94536 -12.76207 -12.62635 -12.36814 -12.27544 -12.15393 -11.98315 -11.88867 -11.59370 -11.48197 -11.31136 -10.73408 -10.21096 -9.93528 -8.90888 -7.74850 -5.20185 0.05746 0.95010 1.48689 1.50443 1.58402 1.59539 1.99928 2.18696 2.51975 2.88472 3.35558 3.52849 3.76054 3.79867 3.81861 3.92003 4.16834 4.41396 4.47485 4.54739 4.59151 4.63005 4.70232 4.76595 4.77134 4.84724 4.92014 5.01814 5.08347 5.25714 5.31087 5.49235 5.54636 5.59127 5.79163 6.28613 6.30073 6.58073 7.03874 7.11053 7.78070 8.41852 9.27190 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031559 B = 0.003656 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.007981 B = 7656.049437 C = 7972.550466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.202 3.798 3 N -0.492 5.492 4 C -0.099 4.099 5 C 0.601 3.399 6 O -0.569 6.569 7 N -0.690 5.690 8 C 0.150 3.850 9 H 0.088 0.912 10 C -0.139 4.139 11 C 0.159 3.841 12 N -0.614 5.614 13 C -0.229 4.229 14 H 0.085 0.915 15 C -0.068 4.068 16 N -0.951 5.951 17 Si 0.980 3.020 18 H -0.289 1.289 19 H -0.295 1.295 20 H -0.268 1.268 21 C 0.151 3.849 22 H 0.046 0.954 23 C -0.146 4.146 24 C 0.028 3.972 25 O -0.195 6.195 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.414 0.586 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.078 0.922 33 H -0.011 1.011 34 H 0.246 0.754 35 H 0.049 0.951 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.840 -18.168 4.276 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.007 4.007 3 N -0.223 5.223 4 C -0.218 4.218 5 C 0.387 3.613 6 O -0.449 6.449 7 N -0.339 5.339 8 C 0.045 3.955 9 H 0.106 0.894 10 C -0.178 4.178 11 C 0.033 3.967 12 N -0.339 5.339 13 C -0.358 4.358 14 H 0.102 0.898 15 C -0.260 4.260 16 N -0.600 5.600 17 Si 0.808 3.192 18 H -0.216 1.216 19 H -0.222 1.222 20 H -0.192 1.192 21 C 0.044 3.956 22 H 0.064 0.936 23 C -0.205 4.205 24 C -0.046 4.046 25 O -0.081 6.081 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.250 0.750 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.007 0.993 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -14.235 -17.675 4.209 23.082 hybrid contribution 0.584 0.752 -0.070 0.955 sum -13.651 -16.922 4.139 22.133 Atomic orbital electron populations 1.20619 0.77521 1.06846 1.06437 1.27324 0.98145 0.77523 0.97702 1.70739 1.00673 1.31380 1.19471 1.21608 0.91809 0.93735 1.14626 1.17033 0.86595 0.81983 0.75639 1.90796 1.25612 1.75816 1.52715 1.45705 1.10314 1.05092 1.72813 1.21846 0.87744 0.89265 0.96662 0.89358 1.23221 1.00577 0.97950 0.96098 1.21668 0.91004 0.89630 0.94385 1.44724 1.54245 1.01358 1.33579 1.19402 1.23508 0.81253 1.11634 0.89760 1.25617 0.99699 1.02434 0.98256 1.70039 1.35136 1.33717 1.21152 0.85051 0.77981 0.79736 0.76394 1.21618 1.22176 1.19234 1.21169 0.95815 0.87244 0.91377 0.93631 1.22114 1.00511 1.01252 0.96624 1.25722 0.85656 0.95024 0.98211 1.84440 1.16467 1.37979 1.69199 0.86790 0.87030 0.87167 0.74951 0.91512 0.91083 0.90361 0.99261 0.94388 0.93225 0.94128 0.91439 0.72849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 71.24 0.75 0.37 16 2 C 0.20 3.50 8.30 88.39 0.73 4.23 16 3 N -0.49 -11.85 11.06 -293.03 -3.24 -15.09 16 4 C -0.10 -2.60 6.99 40.40 0.28 -2.31 16 5 C 0.60 19.30 7.81 86.66 0.68 19.97 16 6 O -0.57 -21.13 16.54 -4.08 -0.07 -21.20 16 7 N -0.69 -22.28 5.17 -440.18 -2.28 -24.56 16 8 C 0.15 5.68 2.84 46.18 0.13 5.81 16 9 H 0.09 3.52 7.26 -2.38 -0.02 3.50 16 10 C -0.14 -5.72 6.77 31.98 0.22 -5.51 16 11 C 0.16 8.11 5.89 86.86 0.51 8.62 16 12 N -0.61 -31.51 3.13 -668.27 -2.09 -33.60 16 13 C -0.23 -12.69 9.87 84.03 0.83 -11.86 16 14 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 15 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 16 N -0.95 -57.01 10.09 21.65 0.22 -56.79 16 17 Si 0.98 45.70 29.55 68.60 2.03 47.72 16 18 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 C 0.15 6.20 3.48 45.34 0.16 6.36 16 22 H 0.05 1.82 7.72 -2.38 -0.02 1.80 16 23 C -0.15 -5.46 9.14 71.98 0.66 -4.80 16 24 C 0.03 0.55 11.95 67.32 0.80 1.36 16 25 O -0.19 -3.39 10.73 0.48 0.01 -3.39 16 26 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.41 12.34 8.10 -92.71 -0.75 11.59 16 30 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.08 4.51 5.87 -2.39 -0.01 4.49 16 33 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 35 H 0.05 1.89 8.03 -2.39 -0.02 1.87 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.26 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -71.56 322.94 1.12 -70.44 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.33 Total: 17.61 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 6.22 Total: 18.86 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -7.39 Total: -130.04 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.06 Total: -24.59 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -71.56 1.12 -70.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088534608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.460 kcal (2) G-P(sol) polarization free energy of solvation -71.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds