Wall clock time and date at job start Tue Mar 31 2020 02:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35309 * 128.04477 * 2 1 4 4 O 1.34013 * 106.67252 * 179.97438 * 3 2 1 5 5 N 1.20905 * 111.84234 * 359.70895 * 4 3 2 6 6 C 1.30977 * 111.44112 * 0.48107 * 5 4 3 7 7 C 1.48334 * 126.93838 * 179.79385 * 6 5 4 8 8 O 1.21493 * 120.00087 * 179.69013 * 7 6 5 9 9 N 1.34777 * 120.00028 * 359.69567 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27546 * 9 7 6 11 11 H 1.09001 * 110.64080 * 325.42452 * 10 9 7 12 12 C 1.55161 * 110.72417 * 88.56363 * 10 9 7 13 13 C 1.54907 * 101.58168 * 153.86445 * 12 10 9 14 14 N 1.47423 * 104.83090 * 322.99102 * 13 12 10 15 15 C 1.36945 * 125.64370 * 204.16855 * 14 13 12 16 16 H 1.08008 * 119.99562 * 179.97438 * 15 14 13 17 17 C 1.38803 * 120.00360 * 359.97438 * 15 14 13 18 18 N 1.31617 * 119.99898 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00023 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46959 * 60.00300 * 19 17 15 21 21 H 1.48503 * 109.46973 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47285 * 300.00081 * 19 17 15 23 23 C 1.47312 * 108.74100 * 24.28565 * 14 13 12 24 24 H 1.09002 * 109.85727 * 239.38914 * 23 14 13 25 25 C 1.53005 * 110.06518 * 118.12428 * 23 14 13 26 26 H 1.08994 * 109.47065 * 270.02746 * 1 2 3 27 27 H 1.09001 * 109.46269 * 30.02577 * 1 2 3 28 28 H 1.09001 * 109.47097 * 150.02071 * 1 2 3 29 29 H 1.08004 * 126.66274 * 0.02562 * 3 2 1 30 30 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 31 31 H 1.08995 * 111.00154 * 271.93830 * 12 10 9 32 32 H 1.09008 * 111.00045 * 35.75040 * 12 10 9 33 33 H 1.08998 * 110.36729 * 81.82977 * 13 12 10 34 34 H 1.09004 * 110.36300 * 204.15699 * 13 12 10 35 35 H 0.97004 * 120.00245 * 179.97438 * 18 17 15 36 36 H 1.08994 * 109.46947 * 302.27388 * 25 23 14 37 37 H 1.08999 * 109.46515 * 62.27184 * 25 23 14 38 38 H 1.09002 * 109.47096 * 182.26876 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0656 0.0000 4 8 3.5889 0.5772 0.0006 5 7 3.5988 -0.6318 0.0066 6 6 2.3837 -1.1206 0.0006 7 6 1.9991 -2.5532 0.0008 8 8 0.8255 -2.8672 0.0005 9 7 2.9517 -3.5067 0.0014 10 6 2.5719 -4.9215 -0.0045 11 1 1.6589 -5.0767 0.5704 12 6 2.3999 -5.4378 -1.4576 13 6 2.6904 -6.9498 -1.2869 14 7 3.7661 -7.0161 -0.2810 15 6 4.6608 -8.0428 -0.1360 16 1 5.4155 -7.9964 0.6353 17 6 4.5977 -9.1429 -0.9800 18 7 3.6776 -9.1997 -1.9194 19 14 5.8185 -10.5429 -0.7824 20 1 5.6875 -11.1258 0.5771 21 1 5.5398 -11.5898 -1.7982 22 1 7.1983 -10.0266 -0.9688 23 6 3.7182 -5.7969 0.5443 24 1 4.6639 -5.2603 0.4673 25 6 3.4411 -6.1618 2.0042 26 1 -0.3633 0.0005 1.0276 27 1 -0.3632 0.8898 -0.5143 28 1 -0.3633 -0.8902 -0.5135 29 1 2.0561 2.1074 0.0004 30 1 3.8888 -3.2560 0.0014 31 1 1.3828 -5.2730 -1.8129 32 1 3.1251 -4.9729 -2.1257 33 1 1.8019 -7.4684 -0.9269 34 1 3.0261 -7.3804 -2.2303 35 1 3.6337 -9.9683 -2.5095 36 1 2.5039 -6.7146 2.0688 37 1 4.2544 -6.7797 2.3848 38 1 3.3677 -5.2512 2.5987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088962060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:22 Heat of formation + Delta-G solvation = 30.450904 kcal Electronic energy + Delta-G solvation = -21822.314204 eV Core-core repulsion = 18475.164491 eV Total energy + Delta-G solvation = -3347.149713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.14288 -41.09520 -39.25098 -35.82677 -35.64520 -34.10431 -33.14801 -32.11309 -30.55416 -29.10961 -27.10856 -25.94271 -25.06509 -22.66774 -22.30100 -21.66423 -21.39937 -19.28470 -18.84571 -18.73879 -17.76004 -17.32451 -16.67481 -16.04246 -15.80461 -15.68692 -15.33423 -14.75633 -14.41205 -14.21364 -14.10231 -14.04275 -13.77501 -13.32197 -13.30192 -12.98253 -12.74492 -12.64040 -12.38491 -12.30320 -12.19809 -12.04992 -11.62195 -11.52708 -11.37599 -11.32472 -10.74539 -10.38098 -10.19917 -8.93558 -7.76683 -5.22216 0.06705 0.73632 1.47415 1.50465 1.56571 1.75658 1.99847 2.29776 2.50142 2.85910 3.33664 3.47372 3.62892 3.76146 3.87206 3.91542 4.08898 4.13139 4.43289 4.45412 4.55049 4.58200 4.74059 4.80370 4.83603 4.85756 4.96410 4.97455 5.03041 5.25854 5.37018 5.46256 5.49277 5.56054 5.76487 6.24852 6.27651 6.87550 7.07304 7.08847 7.75548 8.39182 9.25155 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036246 B = 0.003729 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.306269 B = 7507.761985 C = 7739.987177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.173 4.173 3 C -0.034 4.034 4 O 0.134 5.866 5 N -0.350 5.350 6 C -0.057 4.057 7 C 0.596 3.404 8 O -0.549 6.549 9 N -0.694 5.694 10 C 0.152 3.848 11 H 0.089 0.911 12 C -0.139 4.139 13 C 0.159 3.841 14 N -0.614 5.614 15 C -0.232 4.232 16 H 0.084 0.916 17 C -0.066 4.066 18 N -0.950 5.950 19 Si 0.980 3.020 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.276 1.276 23 C 0.150 3.850 24 H 0.046 0.954 25 C -0.146 4.146 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.279 0.721 30 H 0.411 0.589 31 H 0.071 0.929 32 H 0.065 0.935 33 H -0.009 1.009 34 H 0.079 0.921 35 H 0.247 0.753 36 H 0.041 0.959 37 H 0.049 0.951 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.471 23.114 4.513 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.178 4.178 3 C -0.114 4.114 4 O 0.056 5.944 5 N -0.049 5.049 6 C -0.214 4.214 7 C 0.381 3.619 8 O -0.426 6.426 9 N -0.345 5.345 10 C 0.046 3.954 11 H 0.107 0.893 12 C -0.178 4.178 13 C 0.033 3.967 14 N -0.339 5.339 15 C -0.361 4.361 16 H 0.102 0.898 17 C -0.259 4.259 18 N -0.600 5.600 19 Si 0.808 3.192 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.202 1.202 23 C 0.043 3.957 24 H 0.064 0.936 25 C -0.205 4.205 26 H 0.098 0.902 27 H 0.123 0.877 28 H 0.077 0.923 29 H 0.294 0.706 30 H 0.248 0.752 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.009 0.991 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.046 22.011 4.441 22.660 hybrid contribution 0.090 -1.094 -0.091 1.101 sum -2.957 20.917 4.350 21.568 Atomic orbital electron populations 1.20227 0.85712 1.04088 1.03529 1.21700 1.00023 0.89905 1.06198 1.26705 0.80317 1.02691 1.01697 1.84745 1.30887 1.14224 1.64595 1.74194 1.21557 0.92794 1.16320 1.23417 0.90867 0.96515 1.10612 1.17181 0.85252 0.83272 0.76198 1.90751 1.18400 1.82309 1.51140 1.45815 1.10058 1.05462 1.73121 1.21872 0.97952 0.78594 0.96936 0.89251 1.23221 1.01145 0.97503 0.95979 1.21675 0.88955 0.90859 0.95166 1.44780 1.34920 1.18603 1.35612 1.19365 1.07568 0.95978 1.13159 0.89798 1.25615 1.00888 1.00981 0.98391 1.70026 1.36935 1.30621 1.22391 0.85127 0.78543 0.78529 0.76964 1.20506 1.22166 1.20217 1.21222 0.95346 0.87702 0.91385 0.93633 1.22106 1.01097 1.00919 0.96371 0.90178 0.87685 0.92326 0.70552 0.75235 0.91022 0.91632 0.99147 0.90296 0.94342 0.94013 0.93170 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.01 71.24 0.71 -0.53 16 2 C -0.17 -3.22 6.34 -19.54 -0.12 -3.35 16 3 C -0.03 -0.36 12.24 67.14 0.82 0.46 16 4 O 0.13 2.31 11.18 71.91 0.80 3.12 16 5 N -0.35 -8.47 11.84 -49.52 -0.59 -9.05 16 6 C -0.06 -1.49 7.19 42.96 0.31 -1.18 16 7 C 0.60 19.17 7.85 86.93 0.68 19.85 16 8 O -0.55 -20.28 15.03 -3.69 -0.06 -20.33 16 9 N -0.69 -22.24 5.19 -439.30 -2.28 -24.52 16 10 C 0.15 5.67 2.79 46.18 0.13 5.80 16 11 H 0.09 3.51 7.33 -2.39 -0.02 3.49 16 12 C -0.14 -5.71 6.77 31.99 0.22 -5.49 16 13 C 0.16 8.09 5.89 86.85 0.51 8.60 16 14 N -0.61 -31.42 3.14 -667.55 -2.10 -33.52 16 15 C -0.23 -12.83 9.91 84.03 0.83 -12.00 16 16 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 17 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 18 N -0.95 -56.85 10.09 21.65 0.22 -56.64 16 19 Si 0.98 45.65 29.55 68.60 2.03 47.68 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 C 0.15 6.14 3.49 45.29 0.16 6.30 16 24 H 0.05 1.81 7.70 -2.39 -0.02 1.79 16 25 C -0.15 -5.40 9.15 71.98 0.66 -4.74 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 1.30 6.89 -2.39 -0.02 1.29 16 29 H 0.28 -0.50 8.06 -2.91 -0.02 -0.52 16 30 H 0.41 12.06 8.10 -92.71 -0.75 11.31 16 31 H 0.07 2.81 8.14 -2.39 -0.02 2.80 16 32 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 33 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.08 4.53 5.87 -2.39 -0.01 4.52 16 35 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 37 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -70.90 319.60 3.74 -67.16 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.33 Total: 15.66 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 5.37 Total: 10.45 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -4.74 Total: -123.72 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.75 Total: -17.22 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.90 3.74 -67.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088962060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.610 kcal (2) G-P(sol) polarization free energy of solvation -70.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds