Wall clock time and date at job start Tue Mar 31 2020 01:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.41254 * 126.70383 * 2 1 4 4 C 1.36825 * 103.84647 * 180.02562 * 3 2 1 5 5 C 1.47509 * 126.94758 * 179.74294 * 4 3 2 6 6 O 1.21588 * 119.99973 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00499 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00481 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47454 * 179.97438 * 8 7 5 10 10 C 1.53783 * 113.61816 * 274.13520 * 9 8 7 11 11 C 1.53950 * 87.02040 * 220.04860 * 10 9 8 12 12 N 1.46500 * 113.53354 * 270.80704 * 11 10 9 13 13 C 1.36936 * 120.00213 * 252.49254 * 12 11 10 14 14 H 1.08000 * 120.00231 * 0.02562 * 13 12 11 15 15 C 1.38815 * 120.00377 * 180.02562 * 13 12 11 16 16 N 1.31625 * 119.99246 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00354 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47134 * 60.00141 * 17 15 13 19 19 H 1.48503 * 109.47115 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47164 * 300.00033 * 17 15 13 21 21 C 1.53773 * 87.11555 * 25.36091 * 11 10 9 22 22 O 1.34642 * 106.10911 * 0.02562 * 4 3 2 23 23 N 1.20883 * 111.47391 * 359.97438 * 22 4 3 24 24 H 1.08995 * 109.47484 * 89.99570 * 1 2 3 25 25 H 1.09002 * 109.46724 * 209.99507 * 1 2 3 26 26 H 1.08998 * 109.46688 * 329.99321 * 1 2 3 27 27 H 1.07995 * 128.08032 * 0.02562 * 3 2 1 28 28 H 0.97004 * 119.99782 * 359.97438 * 7 5 4 29 29 H 1.09002 * 109.47320 * 299.99415 * 8 7 5 30 30 H 1.09009 * 109.47479 * 59.99723 * 8 7 5 31 31 H 1.09000 * 112.85033 * 45.33123 * 9 8 7 32 32 H 1.09005 * 113.60948 * 334.56906 * 10 9 8 33 33 H 1.08999 * 113.61129 * 105.46480 * 10 9 8 34 34 H 1.09005 * 113.74500 * 139.94645 * 11 10 9 35 35 H 0.96997 * 119.99811 * 72.50007 * 12 11 10 36 36 H 0.97005 * 119.99030 * 180.02562 * 16 15 13 37 37 H 1.08996 * 113.61759 * 220.08799 * 21 11 10 38 38 H 1.09004 * 113.61572 * 89.18636 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 -0.0006 5 6 4.8871 1.3429 -0.0061 6 8 4.8829 2.5588 -0.0113 7 7 6.0566 0.6731 -0.0065 8 6 7.3227 1.4099 -0.0126 9 6 8.4891 0.4197 -0.0111 10 6 8.8963 -0.0505 1.3953 11 6 10.3567 0.0524 0.9194 12 7 10.8609 -1.1796 0.3076 13 6 11.7673 -1.9562 0.9788 14 1 12.1103 -1.6607 1.9593 15 6 12.2454 -3.1233 0.3989 16 7 11.8277 -3.4831 -0.7963 17 14 13.4813 -4.1830 1.3147 18 1 12.8889 -4.6369 2.5985 19 1 13.8312 -5.3641 0.4854 20 1 14.7068 -3.3901 1.5880 21 6 9.8688 1.0927 -0.1025 22 8 3.4539 -0.7361 -0.0015 23 7 2.2848 -1.0434 -0.0010 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3632 0.8899 0.5139 27 1 2.0679 2.1746 0.0004 28 1 6.0599 -0.2969 -0.0028 29 1 7.3761 2.0332 -0.9052 30 1 7.3806 2.0403 0.8748 31 1 8.3531 -0.3956 -0.7217 32 1 8.6427 0.6588 2.1832 33 1 8.5811 -1.0687 1.6235 34 1 11.0348 0.4610 1.6687 35 1 10.5526 -1.4451 -0.5729 36 1 12.1616 -4.2989 -1.2013 37 1 10.3377 0.9962 -1.0817 38 1 9.8817 2.1152 0.2751 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090916650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:33 Heat of formation + Delta-G solvation = 52.746220 kcal Electronic energy + Delta-G solvation = -20732.462771 eV Core-core repulsion = 17386.279855 eV Total energy + Delta-G solvation = -3346.182916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.27770 -39.91476 -38.53846 -35.35654 -34.74157 -33.27798 -32.32643 -30.20408 -29.06455 -27.68867 -25.10235 -24.33987 -23.48057 -23.04318 -21.70465 -20.35523 -18.81121 -18.18128 -18.05482 -17.30465 -16.38033 -16.24595 -15.46701 -14.96346 -14.67042 -14.20881 -14.02291 -13.80872 -13.75697 -13.48510 -13.34738 -13.10472 -12.90768 -12.34498 -11.96405 -11.71761 -11.46629 -11.07218 -10.85236 -10.65483 -10.49922 -10.42818 -10.21321 -10.02208 -9.94114 -9.70974 -9.55351 -9.19230 -8.90100 -7.02125 -5.82122 -3.11350 0.54448 1.73401 2.37534 2.78020 3.04074 3.41859 3.46457 3.47313 3.74110 4.17071 4.54525 4.63298 4.73414 4.95237 4.98373 5.03769 5.07371 5.18122 5.25005 5.35459 5.43131 5.55381 5.63280 5.67867 5.77263 5.89513 6.02348 6.16787 6.19608 6.34098 6.54318 6.72013 6.84602 7.01149 7.16103 7.67180 7.73970 7.85655 8.37084 9.47714 10.04894 10.38948 11.40207 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025227 B = 0.003006 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.668210 B = 9311.470689 C =10136.220582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.007 3.993 3 C -0.155 4.155 4 C -0.079 4.079 5 C 0.601 3.399 6 O -0.518 6.518 7 N -0.705 5.705 8 C 0.129 3.871 9 C -0.122 4.122 10 C -0.170 4.170 11 C 0.168 3.832 12 N -0.706 5.706 13 C -0.244 4.244 14 H 0.072 0.928 15 C -0.012 4.012 16 N -0.933 5.933 17 Si 0.909 3.091 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.147 4.147 22 O 0.120 5.880 23 N -0.344 5.344 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.183 0.817 28 H 0.411 0.589 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.385 0.615 36 H 0.257 0.743 37 H 0.069 0.931 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.548 10.118 1.064 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.150 4.150 3 C -0.177 4.177 4 C -0.145 4.145 5 C 0.384 3.616 6 O -0.395 6.395 7 N -0.355 5.355 8 C 0.007 3.993 9 C -0.140 4.140 10 C -0.211 4.211 11 C 0.055 3.945 12 N -0.344 5.344 13 C -0.375 4.375 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.580 5.580 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.186 4.186 22 O 0.046 5.954 23 N -0.046 5.046 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.200 0.800 28 H 0.246 0.754 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.596 9.572 1.156 21.840 hybrid contribution 0.377 -0.421 0.129 0.580 sum -19.219 9.151 1.285 21.325 Atomic orbital electron populations 1.20207 0.85245 1.04138 1.03715 1.23682 0.99440 0.88333 1.03584 1.22851 0.89949 1.01706 1.03206 1.24332 0.97487 0.84041 1.08625 1.16541 0.81161 0.86174 0.77707 1.90869 1.86159 1.11850 1.50606 1.46009 1.05515 1.11348 1.72633 1.21647 0.80737 0.94636 1.02315 1.22746 0.92979 0.98188 1.00119 1.23941 1.01845 1.00975 0.94342 1.21082 0.91958 0.87648 0.93790 1.42166 1.50233 1.22017 1.19995 1.19240 1.16529 1.01886 0.99832 0.91037 1.24769 1.00671 0.98549 0.96845 1.69654 1.47333 1.25625 1.15429 0.86241 0.81178 0.79901 0.78701 1.21202 1.21676 1.21193 1.23444 0.94684 0.98930 1.01591 1.85007 1.21442 1.22107 1.66802 1.73768 0.89258 1.24305 1.17234 0.89865 0.90231 0.89694 0.79963 0.75392 0.91144 0.90918 0.88638 0.91333 0.91352 0.91895 0.78092 0.93361 0.91209 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.47 36.01 0.38 -0.07 16 2 C 0.01 0.07 7.31 -82.16 -0.60 -0.53 16 3 C -0.15 -1.52 10.91 -38.95 -0.43 -1.95 16 4 C -0.08 -0.90 7.29 -36.32 -0.26 -1.16 16 5 C 0.60 7.59 7.82 -12.48 -0.10 7.49 16 6 O -0.52 -7.84 16.91 5.29 0.09 -7.75 16 7 N -0.70 -8.26 5.55 -61.36 -0.34 -8.60 16 8 C 0.13 1.58 5.50 -4.05 -0.02 1.56 16 9 C -0.12 -1.71 3.62 -89.80 -0.33 -2.03 16 10 C -0.17 -2.70 7.44 -25.83 -0.19 -2.90 16 11 C 0.17 3.16 4.57 -67.03 -0.31 2.85 16 12 N -0.71 -17.04 5.31 -52.55 -0.28 -17.31 16 13 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 14 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 15 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 17 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 C -0.15 -2.22 7.39 -25.92 -0.19 -2.42 16 22 O 0.12 1.43 11.04 15.55 0.17 1.60 16 23 N -0.34 -4.15 12.04 33.52 0.40 -3.75 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.41 4.38 8.30 -40.82 -0.34 4.04 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.89 7.87 -51.92 -0.41 0.49 16 31 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 331.97 15.07 5.00 5.00 Total: -1.00 -31.46 331.97 -6.80 -38.25 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.25 Total: 8.79 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.30 Total: -6.36 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.51 Total: -56.56 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: 0.26 Total: -6.15 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.46 -6.80 -38.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090916650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.998 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds