Wall clock time and date at job start Tue Mar 31 2020 01:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.41254 * 126.70383 * 2 1 4 4 C 1.36825 * 103.84647 * 180.02562 * 3 2 1 5 5 C 1.47509 * 126.94758 * 179.74294 * 4 3 2 6 6 O 1.21588 * 119.99973 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00499 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00481 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47454 * 179.97438 * 8 7 5 10 10 C 1.53783 * 113.61816 * 274.13520 * 9 8 7 11 11 C 1.53950 * 87.02040 * 220.04860 * 10 9 8 12 12 N 1.46500 * 113.53354 * 270.80704 * 11 10 9 13 13 C 1.36936 * 120.00213 * 252.49254 * 12 11 10 14 14 H 1.08000 * 120.00231 * 0.02562 * 13 12 11 15 15 C 1.38815 * 120.00377 * 180.02562 * 13 12 11 16 16 N 1.31625 * 119.99246 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00354 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47134 * 60.00141 * 17 15 13 19 19 H 1.48503 * 109.47115 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47164 * 300.00033 * 17 15 13 21 21 C 1.53773 * 87.11555 * 25.36091 * 11 10 9 22 22 O 1.34642 * 106.10911 * 0.02562 * 4 3 2 23 23 N 1.20883 * 111.47391 * 359.97438 * 22 4 3 24 24 H 1.08995 * 109.47484 * 89.99570 * 1 2 3 25 25 H 1.09002 * 109.46724 * 209.99507 * 1 2 3 26 26 H 1.08998 * 109.46688 * 329.99321 * 1 2 3 27 27 H 1.07995 * 128.08032 * 0.02562 * 3 2 1 28 28 H 0.97004 * 119.99782 * 359.97438 * 7 5 4 29 29 H 1.09002 * 109.47320 * 299.99415 * 8 7 5 30 30 H 1.09009 * 109.47479 * 59.99723 * 8 7 5 31 31 H 1.09000 * 112.85033 * 45.33123 * 9 8 7 32 32 H 1.09005 * 113.60948 * 334.56906 * 10 9 8 33 33 H 1.08999 * 113.61129 * 105.46480 * 10 9 8 34 34 H 1.09005 * 113.74500 * 139.94645 * 11 10 9 35 35 H 0.96997 * 119.99811 * 72.50007 * 12 11 10 36 36 H 0.97005 * 119.99030 * 180.02562 * 16 15 13 37 37 H 1.08996 * 113.61759 * 220.08799 * 21 11 10 38 38 H 1.09004 * 113.61572 * 89.18636 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 -0.0006 5 6 4.8871 1.3429 -0.0061 6 8 4.8829 2.5588 -0.0113 7 7 6.0566 0.6731 -0.0065 8 6 7.3227 1.4099 -0.0126 9 6 8.4891 0.4197 -0.0111 10 6 8.8963 -0.0505 1.3953 11 6 10.3567 0.0524 0.9194 12 7 10.8609 -1.1796 0.3076 13 6 11.7673 -1.9562 0.9788 14 1 12.1103 -1.6607 1.9593 15 6 12.2454 -3.1233 0.3989 16 7 11.8277 -3.4831 -0.7963 17 14 13.4813 -4.1830 1.3147 18 1 12.8889 -4.6369 2.5985 19 1 13.8312 -5.3641 0.4854 20 1 14.7068 -3.3901 1.5880 21 6 9.8688 1.0927 -0.1025 22 8 3.4539 -0.7361 -0.0015 23 7 2.2848 -1.0434 -0.0010 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3632 0.8899 0.5139 27 1 2.0679 2.1746 0.0004 28 1 6.0599 -0.2969 -0.0028 29 1 7.3761 2.0332 -0.9052 30 1 7.3806 2.0403 0.8748 31 1 8.3531 -0.3956 -0.7217 32 1 8.6427 0.6588 2.1832 33 1 8.5811 -1.0687 1.6235 34 1 11.0348 0.4610 1.6687 35 1 10.5526 -1.4451 -0.5729 36 1 12.1616 -4.2989 -1.2013 37 1 10.3377 0.9962 -1.0817 38 1 9.8817 2.1152 0.2751 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090916650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:31 Heat of formation + Delta-G solvation = 31.215006 kcal Electronic energy + Delta-G solvation = -20733.396434 eV Core-core repulsion = 17386.279855 eV Total energy + Delta-G solvation = -3347.116579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -46.09025 -40.98012 -39.85091 -36.28990 -35.81125 -35.00039 -33.22626 -32.02166 -29.64893 -28.94451 -26.41240 -25.90728 -24.80476 -23.92877 -22.93863 -21.28696 -19.94429 -19.42708 -19.13315 -18.90010 -17.36227 -17.21830 -16.69272 -16.46328 -15.88081 -15.76479 -15.20912 -14.82825 -14.69869 -14.58575 -14.22234 -14.15211 -13.75685 -13.68247 -13.27038 -12.92406 -12.91418 -12.62865 -12.43125 -12.19705 -12.06767 -11.75248 -11.47195 -11.33252 -11.14481 -10.93959 -10.88489 -10.78757 -10.20305 -8.98512 -7.94604 -5.22541 -0.32743 0.98260 1.48386 1.49094 1.50834 1.56851 1.83266 2.13678 2.56641 3.07099 3.37349 3.40034 3.72701 3.79219 3.80103 3.93195 3.97545 4.15307 4.33507 4.35058 4.42366 4.68560 4.72626 4.74018 4.75614 4.79918 4.96140 5.01661 5.08606 5.18214 5.18728 5.37275 5.44401 5.54598 5.68728 6.20007 6.29325 6.80589 7.00565 7.34267 8.12439 8.33899 9.28536 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025227 B = 0.003006 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.668210 B = 9311.470689 C =10136.220582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.013 3.987 3 C -0.146 4.146 4 C -0.094 4.094 5 C 0.607 3.393 6 O -0.544 6.544 7 N -0.701 5.701 8 C 0.138 3.862 9 C -0.105 4.105 10 C -0.156 4.156 11 C 0.142 3.858 12 N -0.721 5.721 13 C -0.242 4.242 14 H 0.077 0.923 15 C -0.076 4.076 16 N -0.970 5.970 17 Si 0.972 3.028 18 H -0.279 1.279 19 H -0.297 1.297 20 H -0.278 1.278 21 C -0.131 4.131 22 O 0.104 5.896 23 N -0.372 5.372 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.204 0.796 28 H 0.415 0.585 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.374 0.626 36 H 0.251 0.749 37 H 0.058 0.942 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.904 11.574 1.914 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.145 4.145 3 C -0.168 4.168 4 C -0.160 4.160 5 C 0.390 3.610 6 O -0.423 6.423 7 N -0.351 5.351 8 C 0.015 3.985 9 C -0.124 4.124 10 C -0.196 4.196 11 C 0.032 3.968 12 N -0.359 5.359 13 C -0.374 4.374 14 H 0.094 0.906 15 C -0.268 4.268 16 N -0.620 5.620 17 Si 0.801 3.199 18 H -0.205 1.205 19 H -0.223 1.223 20 H -0.204 1.204 21 C -0.171 4.171 22 O 0.034 5.966 23 N -0.076 5.076 24 H 0.116 0.884 25 H 0.100 0.900 26 H 0.127 0.873 27 H 0.221 0.779 28 H 0.251 0.749 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.206 0.794 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -20.945 11.064 2.044 23.776 hybrid contribution 0.720 -0.791 -0.098 1.074 sum -20.225 10.273 1.945 22.767 Atomic orbital electron populations 1.20422 0.82529 1.05430 1.05003 1.24320 1.01054 0.87552 1.01573 1.23223 0.89236 1.02756 1.01568 1.24252 0.97594 0.84193 1.09949 1.16573 0.81501 0.85844 0.77043 1.90851 1.86597 1.12829 1.52033 1.45975 1.05350 1.11610 1.72198 1.21520 0.79993 0.93925 1.03035 1.22522 0.93530 0.97969 0.98407 1.23773 0.99147 1.00569 0.96154 1.21442 0.93279 0.86890 0.95193 1.42311 1.50293 1.23584 1.19688 1.19638 1.16014 1.01892 0.99869 0.90553 1.25549 1.03160 1.00240 0.97872 1.69808 1.49136 1.26003 1.17060 0.85231 0.79190 0.77982 0.77489 1.20487 1.22337 1.20364 1.23336 0.94363 0.99450 0.99905 1.84984 1.21696 1.22292 1.67647 1.73767 0.89557 1.25547 1.18772 0.88446 0.90040 0.87312 0.77854 0.74876 0.90527 0.90080 0.90095 0.88703 0.93561 0.92126 0.79371 0.94051 0.92308 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.47 71.24 0.75 0.05 16 2 C 0.01 0.23 7.31 43.55 0.32 0.54 16 3 C -0.15 -2.60 10.91 22.68 0.25 -2.35 16 4 C -0.09 -2.06 7.29 24.38 0.18 -1.89 16 5 C 0.61 14.62 7.82 86.69 0.68 15.30 16 6 O -0.54 -15.67 16.91 -3.99 -0.07 -15.73 16 7 N -0.70 -15.63 5.55 -466.31 -2.59 -18.22 16 8 C 0.14 3.09 5.50 86.38 0.47 3.57 16 9 C -0.11 -2.83 3.62 -10.26 -0.04 -2.87 16 10 C -0.16 -4.76 7.44 31.18 0.23 -4.53 16 11 C 0.14 5.24 4.57 45.57 0.21 5.45 16 12 N -0.72 -35.23 5.31 -320.18 -1.70 -36.93 16 13 C -0.24 -13.24 9.97 84.03 0.84 -12.40 16 14 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 15 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 16 N -0.97 -58.79 13.06 21.65 0.28 -58.51 16 17 Si 0.97 45.78 29.55 68.60 2.03 47.80 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 C -0.13 -3.76 7.39 31.12 0.23 -3.53 16 22 O 0.10 2.46 11.04 65.83 0.73 3.19 16 23 N -0.37 -8.72 12.04 -48.87 -0.59 -9.31 16 24 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.20 2.61 8.06 -2.91 -0.02 2.59 16 28 H 0.41 8.64 8.30 -92.71 -0.77 7.87 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 1.75 7.87 -2.38 -0.02 1.73 16 31 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.09 2.42 7.92 -2.38 -0.02 2.40 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 2.24 8.10 -2.38 -0.02 2.23 16 35 H 0.37 19.62 7.90 -92.71 -0.73 18.89 16 36 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.11 2.48 8.10 -2.38 -0.02 2.46 16 Total: -1.00 -68.21 331.97 2.26 -65.95 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -0.41 Total: 28.28 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 4.58 Total: -6.52 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -4.59 Total: -122.96 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.66 Total: -12.55 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -68.21 2.26 -65.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090916650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.163 kcal (2) G-P(sol) polarization free energy of solvation -68.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds