Wall clock time and date at job start Tue Mar 31 2020 02:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35253 * 128.01984 * 2 1 4 4 O 1.34086 * 106.60759 * 179.88463 * 3 2 1 5 5 N 1.20907 * 111.75118 * 0.41155 * 4 3 2 6 6 C 1.30727 * 111.47347 * 359.73990 * 5 4 3 7 7 N 1.39485 * 126.89508 * 179.97438 * 6 5 4 8 8 C 1.34775 * 119.99953 * 0.02562 * 7 6 5 9 9 O 1.21578 * 120.00395 * 354.98862 * 8 7 6 10 10 N 1.34780 * 119.99676 * 174.99009 * 8 7 6 11 11 C 1.46931 * 120.62844 * 184.94921 * 10 8 7 12 12 C 1.52764 * 109.00719 * 233.58465 * 11 10 8 13 13 C 1.53038 * 109.38130 * 305.58402 * 12 11 10 14 14 C 1.50694 * 109.44847 * 181.25272 * 13 12 11 15 15 H 1.08000 * 120.00746 * 239.94166 * 14 13 12 16 16 C 1.37877 * 120.00015 * 59.94208 * 14 13 12 17 17 N 1.31516 * 119.99898 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00149 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47058 * 90.00019 * 18 16 14 20 20 H 1.48500 * 109.47035 * 209.99697 * 18 16 14 21 21 H 1.48497 * 109.47069 * 329.99917 * 18 16 14 22 22 C 1.53048 * 109.53685 * 61.24213 * 13 12 11 23 23 C 1.46924 * 120.63513 * 5.22547 * 10 8 7 24 24 H 1.08991 * 109.47121 * 269.67657 * 1 2 3 25 25 H 1.09000 * 109.46365 * 149.67688 * 1 2 3 26 26 H 1.08994 * 109.47002 * 29.68260 * 1 2 3 27 27 H 1.08000 * 126.68890 * 0.02562 * 3 2 1 28 28 H 0.97003 * 119.99967 * 180.02562 * 7 6 5 29 29 H 1.09007 * 109.58600 * 353.41516 * 11 10 8 30 30 H 1.08995 * 109.58873 * 113.84246 * 11 10 8 31 31 H 1.08999 * 109.56066 * 185.55204 * 12 11 10 32 32 H 1.09001 * 109.38682 * 65.51120 * 12 11 10 33 33 H 1.08998 * 109.46623 * 301.22298 * 13 12 11 34 34 H 0.96996 * 120.00179 * 179.97438 * 17 16 14 35 35 H 1.08997 * 109.49712 * 178.68089 * 22 13 12 36 36 H 1.09003 * 109.52160 * 58.60266 * 22 13 12 37 37 H 1.08994 * 109.58748 * 246.15598 * 23 10 8 38 38 H 1.08999 * 109.58300 * 6.44006 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3401 1.0655 0.0000 4 8 3.5884 0.5760 0.0026 5 7 3.5956 -0.6330 -0.0040 6 6 2.3819 -1.1188 -0.0062 7 7 2.0190 -2.4656 -0.0139 8 6 2.9706 -3.4199 -0.0194 9 8 4.1426 -3.1093 -0.1097 10 7 2.6230 -4.7187 0.0751 11 6 3.6512 -5.7631 0.1794 12 6 3.4122 -6.8071 -0.9099 13 6 1.9761 -7.3262 -0.8095 14 6 1.7480 -8.3785 -1.8638 15 1 0.9820 -8.2365 -2.6118 16 6 2.5172 -9.5226 -1.8736 17 7 3.4504 -9.6955 -0.9632 18 14 2.2341 -10.8274 -3.1802 19 1 3.0893 -10.5405 -4.3598 20 1 2.5812 -12.1623 -2.6300 21 1 0.8066 -10.8165 -3.5893 22 6 0.9974 -6.1692 -1.0238 23 6 1.2090 -5.1176 0.0698 24 1 -0.3633 -0.0058 1.0276 25 1 -0.3632 -0.8871 -0.5189 26 1 -0.3633 0.8928 -0.5089 27 1 2.0553 2.1073 0.0004 28 1 1.0816 -2.7153 -0.0152 29 1 4.6380 -5.3189 0.0476 30 1 3.5904 -6.2394 1.1578 31 1 4.1084 -7.6357 -0.7804 32 1 3.5668 -6.3514 -1.8880 33 1 1.8148 -7.7600 0.1774 34 1 3.9913 -10.5006 -0.9698 35 1 -0.0250 -6.5438 -0.9754 36 1 1.1741 -5.7189 -2.0006 37 1 0.9449 -5.5402 1.0392 38 1 0.5846 -4.2471 -0.1316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116524761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:54 Heat of formation + Delta-G solvation = 19.329802 kcal Electronic energy + Delta-G solvation = -21907.437375 eV Core-core repulsion = 18559.805414 eV Total energy + Delta-G solvation = -3347.631960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.86303 -41.67151 -38.81147 -36.96171 -35.48357 -34.45772 -33.09062 -32.36926 -31.55300 -28.89872 -28.10207 -25.35467 -24.28758 -23.38215 -22.96751 -21.52318 -20.28692 -19.78472 -18.74213 -18.61267 -18.33662 -17.22863 -16.67964 -16.56559 -16.13050 -15.43010 -14.98776 -14.83987 -14.71501 -14.35747 -14.16555 -14.02880 -13.99843 -13.47666 -13.11148 -13.02527 -12.85110 -12.68292 -12.48896 -12.19717 -12.09490 -11.96540 -11.47970 -11.41904 -10.99394 -10.83675 -10.42547 -10.28038 -9.99051 -9.46562 -8.08551 -6.22285 0.68274 1.13029 1.22165 1.40878 1.42944 1.51589 2.11443 2.43361 2.50812 2.66625 3.18577 3.34215 3.77095 3.98235 4.13119 4.17787 4.27096 4.37113 4.45806 4.53697 4.66352 4.83781 4.87888 4.90480 4.92500 5.00750 5.12649 5.18989 5.24213 5.39314 5.40956 5.44562 5.62110 5.77986 5.96729 6.08691 6.36915 6.64295 6.89274 7.24472 7.46093 7.59851 8.95066 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.037791 B = 0.003701 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.733835 B = 7564.124083 C = 7942.296539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.221 4.221 3 C -0.035 4.035 4 O 0.087 5.913 5 N -0.406 5.406 6 C 0.232 3.768 7 N -0.633 5.633 8 C 0.695 3.305 9 O -0.603 6.603 10 N -0.612 5.612 11 C 0.138 3.862 12 C -0.112 4.112 13 C 0.045 3.955 14 C -0.532 4.532 15 H 0.054 0.946 16 C 0.013 3.987 17 N -0.916 5.916 18 Si 0.950 3.050 19 H -0.282 1.282 20 H -0.285 1.285 21 H -0.265 1.265 22 C -0.116 4.116 23 C 0.113 3.887 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.270 0.730 28 H 0.432 0.568 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.018 0.982 33 H 0.009 0.991 34 H 0.260 0.740 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.903 20.401 3.803 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.227 4.227 3 C -0.116 4.116 4 O 0.026 5.974 5 N -0.120 5.120 6 C -0.019 4.019 7 N -0.293 5.293 8 C 0.396 3.604 9 O -0.480 6.480 10 N -0.348 5.348 11 C 0.016 3.984 12 C -0.151 4.151 13 C 0.027 3.973 14 C -0.570 4.570 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.555 5.555 18 Si 0.776 3.224 19 H -0.208 1.208 20 H -0.210 1.210 21 H -0.190 1.190 22 C -0.154 4.154 23 C -0.008 4.008 24 H 0.105 0.895 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.286 0.714 28 H 0.275 0.725 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.037 0.963 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.721 19.885 3.813 22.046 hybrid contribution -0.712 -1.327 -0.782 1.697 sum -9.434 18.558 3.031 21.038 Atomic orbital electron populations 1.20228 0.84219 1.04704 1.03920 1.21465 1.00088 0.88742 1.12419 1.26638 0.81611 1.02764 1.00579 1.84870 1.30414 1.14166 1.67939 1.74527 1.20886 0.91849 1.24725 1.20773 0.90555 0.86578 1.03947 1.41683 1.10340 1.00522 1.76743 1.16029 0.84586 0.81494 0.78301 1.90960 1.18270 1.81315 1.57439 1.47428 1.09055 1.03098 1.75220 1.21425 0.90305 0.87165 0.99553 1.21728 1.02088 0.96423 0.94869 1.18613 0.90967 0.92089 0.95681 1.21586 1.18066 1.03474 1.13909 0.92772 1.25711 0.95062 1.00192 0.97626 1.69970 1.22184 1.27742 1.35629 0.85677 0.78662 0.78654 0.79376 1.20845 1.21038 1.18975 1.21880 1.00542 0.95777 0.97242 1.21956 0.79318 0.98900 1.00673 0.89531 0.91109 0.88101 0.71410 0.72515 0.91772 0.91342 0.90679 0.96315 0.97285 0.93067 0.90059 0.93700 0.89650 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.47 71.24 0.75 0.13 16 2 C -0.22 -3.84 6.34 -19.61 -0.12 -3.97 16 3 C -0.04 -0.51 12.25 67.13 0.82 0.32 16 4 O 0.09 2.24 11.19 71.22 0.80 3.04 16 5 N -0.41 -14.10 10.40 -56.32 -0.59 -14.68 16 6 C 0.23 6.68 7.90 134.11 1.06 7.74 16 7 N -0.63 -18.20 5.33 -323.28 -1.72 -19.92 16 8 C 0.69 26.54 8.26 179.05 1.48 28.02 16 9 O -0.60 -28.79 14.54 -3.96 -0.06 -28.85 16 10 N -0.61 -22.16 2.98 -837.75 -2.50 -24.66 16 11 C 0.14 5.79 6.41 86.22 0.55 6.34 16 12 C -0.11 -5.40 5.14 30.53 0.16 -5.24 16 13 C 0.05 2.13 2.07 -11.51 -0.02 2.10 16 14 C -0.53 -28.30 8.56 25.60 0.22 -28.08 16 15 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 16 C 0.01 0.69 5.30 84.65 0.45 1.14 16 17 N -0.92 -52.02 11.30 21.45 0.24 -51.78 16 18 Si 0.95 43.10 29.54 68.60 2.03 45.12 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 C -0.12 -4.18 5.30 30.67 0.16 -4.02 16 23 C 0.11 3.23 6.39 86.36 0.55 3.78 16 24 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.07 0.58 8.08 -2.39 -0.02 0.56 16 26 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.27 0.46 8.06 -2.91 -0.02 0.44 16 28 H 0.43 8.68 6.25 -92.71 -0.58 8.10 16 29 H 0.06 2.86 7.00 -2.38 -0.02 2.84 16 30 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.07 4.08 6.03 -2.39 -0.01 4.07 16 32 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 35 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.10 1.98 5.64 -2.39 -0.01 1.97 16 Total: -1.00 -77.56 313.23 4.76 -72.80 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.51 Total: 10.68 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 6.05 Total: 8.25 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -4.56 Total: -111.04 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: 0.74 Total: -25.81 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -77.56 4.76 -72.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116524761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.131 kcal (2) G-P(sol) polarization free energy of solvation -77.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds