Wall clock time and date at job start Tue Mar 31 2020 02:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33695 * 126.27359 * 2 1 4 4 C 1.30624 * 108.99373 * 180.17313 * 3 2 1 5 5 C 1.50697 * 125.42390 * 179.83526 * 4 3 2 6 6 C 1.53000 * 117.49504 * 351.07389 * 5 4 3 7 7 C 1.52997 * 60.00347 * 107.48912 * 6 5 4 8 8 O 1.33671 * 109.15407 * 359.57076 * 4 3 2 9 9 C 1.35343 * 107.68284 * 0.26427 * 8 4 3 10 10 C 1.46720 * 126.64208 * 180.02562 * 9 8 4 11 11 O 1.21684 * 120.00288 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00126 * 359.97438 * 10 9 8 13 13 C 1.46496 * 119.99971 * 179.97438 * 12 10 9 14 14 C 1.53011 * 109.46820 * 179.97438 * 13 12 10 15 15 N 1.46503 * 109.47003 * 179.97438 * 14 13 12 16 16 C 1.36927 * 120.00019 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00291 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00358 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99732 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00323 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47221 * 59.99885 * 20 18 16 22 22 H 1.48503 * 109.47331 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47094 * 299.99830 * 20 18 16 24 24 H 1.09007 * 109.46563 * 270.29769 * 1 2 3 25 25 H 1.09001 * 109.47157 * 30.29440 * 1 2 3 26 26 H 1.09000 * 109.47386 * 150.29862 * 1 2 3 27 27 H 1.08990 * 115.56356 * 205.38561 * 5 4 3 28 28 H 1.09002 * 117.49696 * 214.98125 * 6 5 4 29 29 H 1.09002 * 117.50343 * 0.02562 * 6 5 4 30 30 H 1.08999 * 117.49685 * 252.51237 * 7 6 5 31 31 H 1.08997 * 117.50044 * 107.48590 * 7 6 5 32 32 H 0.97003 * 119.99575 * 359.97438 * 12 10 9 33 33 H 1.09000 * 109.47349 * 299.99133 * 13 12 10 34 34 H 1.08994 * 109.47557 * 60.00187 * 13 12 10 35 35 H 1.08996 * 109.47121 * 299.99749 * 14 13 12 36 36 H 1.08999 * 109.46973 * 60.00304 * 14 13 12 37 37 H 0.97004 * 119.99794 * 0.02562 * 15 14 13 38 38 H 0.96996 * 120.00221 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6898 -0.0037 5 6 4.7440 1.6030 -0.0086 6 6 4.4928 3.0974 -0.2197 7 6 4.8948 2.5770 1.1617 8 8 3.5890 -0.6461 0.0032 9 6 2.3136 -1.0992 0.0057 10 6 1.8826 -2.5016 0.0135 11 8 0.6966 -2.7737 0.0154 12 7 2.8003 -3.4887 0.0187 13 6 2.3699 -4.8890 0.0271 14 6 3.5991 -5.8003 0.0309 15 7 3.1687 -7.2006 0.0399 16 6 4.1011 -8.2034 0.0442 17 1 5.1538 -7.9620 0.0413 18 6 3.6934 -9.5303 0.0522 19 7 2.4104 -9.8245 0.0563 20 14 4.9654 -10.8983 0.0588 21 1 5.8164 -10.7772 1.2697 22 1 4.2771 -12.2142 0.0664 23 1 5.8138 -10.7911 -1.1552 24 1 -0.3633 0.0053 1.0278 25 1 -0.3633 0.8873 -0.5184 26 1 -0.3634 -0.8926 -0.5092 27 1 5.6550 1.1809 -0.4327 28 1 5.2387 3.6584 -0.7829 29 1 3.4605 3.4201 -0.3548 30 1 4.1270 2.5573 1.9351 31 1 5.9051 2.7957 1.5075 32 1 3.7458 -3.2718 0.0168 33 1 1.7727 -5.0802 0.9186 34 1 1.7715 -5.0906 -0.8613 35 1 4.1960 -5.6090 -0.8608 36 1 4.1979 -5.5989 0.9191 37 1 2.2232 -7.4174 0.0422 38 1 2.1255 -10.7517 0.0615 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135020390.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:56 Heat of formation + Delta-G solvation = 21.408311 kcal Electronic energy + Delta-G solvation = -20616.116289 eV Core-core repulsion = 17268.574459 eV Total energy + Delta-G solvation = -3347.541830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.67949 -39.53196 -37.74108 -36.00460 -35.34747 -33.89032 -31.73435 -31.17699 -28.68178 -27.36793 -25.28877 -23.65842 -22.92733 -22.04878 -21.47163 -21.13124 -20.60029 -18.25868 -17.30984 -17.20941 -16.84329 -15.85776 -15.33913 -15.15590 -15.05371 -14.57317 -14.07384 -13.79618 -13.44480 -13.37171 -13.20291 -12.90575 -12.83534 -12.29017 -12.05603 -11.72817 -11.51802 -11.21172 -11.14970 -11.02340 -10.94857 -10.87492 -10.81731 -10.26110 -10.12408 -9.77870 -9.21361 -8.95367 -8.79962 -7.02635 -5.81726 -3.12836 0.59156 2.05787 2.08618 3.00605 3.05798 3.30211 3.41570 3.45734 3.47179 3.59286 4.20423 4.33212 4.41231 4.51780 4.56047 4.73246 5.10273 5.15222 5.30065 5.32366 5.45904 5.46836 5.49973 5.52006 5.65525 5.68053 5.70627 5.73111 5.89417 6.04570 6.13226 6.35373 6.64052 6.64511 7.24108 7.47719 7.63307 8.01305 8.35683 9.47007 10.00780 10.35807 11.40753 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028528 B = 0.002835 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.259943 B = 9875.867306 C =10763.112865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.081 3.919 3 N -0.487 5.487 4 C 0.250 3.750 5 C -0.088 4.088 6 C -0.144 4.144 7 C -0.152 4.152 8 O -0.184 6.184 9 C -0.114 4.114 10 C 0.606 3.394 11 O -0.513 6.513 12 N -0.709 5.709 13 C 0.110 3.890 14 C 0.144 3.856 15 N -0.729 5.729 16 C -0.246 4.246 17 H 0.071 0.929 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.138 0.862 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.404 0.596 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.387 0.613 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.347 26.732 0.232 26.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 N -0.217 5.217 4 C 0.045 3.955 5 C -0.107 4.107 6 C -0.181 4.181 7 C -0.190 4.190 8 O -0.071 6.071 9 C -0.169 4.169 10 C 0.391 3.609 11 O -0.391 6.391 12 N -0.359 5.359 13 C -0.013 4.013 14 C 0.016 3.984 15 N -0.374 5.374 16 C -0.377 4.377 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.156 0.844 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.239 0.761 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.220 0.780 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.511 26.959 0.235 27.077 hybrid contribution 1.180 -1.576 -0.012 1.969 sum 3.691 25.383 0.223 25.651 Atomic orbital electron populations 1.20398 0.85133 1.04439 1.03771 1.22055 0.98358 0.86261 0.97684 1.70253 1.00127 1.31106 1.20170 1.25275 0.94240 0.79046 0.96976 1.20182 0.93134 0.89364 1.07993 1.23123 1.04495 0.91549 0.98968 1.23156 1.03975 0.99962 0.91930 1.84418 1.29845 1.23323 1.69501 1.23008 0.81060 0.96427 1.16410 1.16269 0.85889 0.81161 0.77616 1.90872 1.15643 1.81720 1.50890 1.45848 1.09778 1.06796 1.73486 1.21705 0.98767 0.77784 1.03064 1.20756 0.93177 0.85852 0.98608 1.42165 1.06936 0.98550 1.89761 1.19143 0.88940 0.85903 1.43687 0.91064 1.24785 0.96143 0.97270 1.02565 1.69656 1.13098 1.18085 1.57032 0.86214 0.80296 0.81438 0.77879 1.21164 1.21576 1.21170 0.89962 0.90522 0.88455 0.84431 0.87254 0.86965 0.87887 0.87143 0.76106 0.90697 0.90704 0.95671 0.95672 0.77950 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.87 36.00 0.36 -0.54 16 2 C 0.08 1.07 7.16 -82.47 -0.59 0.48 16 3 N -0.49 -6.08 10.79 -7.07 -0.08 -6.16 16 4 C 0.25 2.80 7.86 -12.79 -0.10 2.70 16 5 C -0.09 -0.63 6.33 -91.77 -0.58 -1.21 16 6 C -0.14 -0.81 10.13 -26.73 -0.27 -1.08 16 7 C -0.15 -0.85 10.23 -26.73 -0.27 -1.12 16 8 O -0.18 -2.32 10.57 4.41 0.05 -2.27 16 9 C -0.11 -1.59 7.18 -36.84 -0.26 -1.85 16 10 C 0.61 9.34 7.79 -12.83 -0.10 9.24 16 11 O -0.51 -9.06 14.79 5.20 0.08 -8.99 16 12 N -0.71 -10.34 5.55 -61.60 -0.34 -10.68 16 13 C 0.11 1.88 5.79 -4.04 -0.02 1.85 16 14 C 0.14 2.83 6.37 -4.03 -0.03 2.80 16 15 N -0.73 -18.47 5.60 -59.90 -0.34 -18.81 16 16 C -0.25 -6.86 9.99 -15.06 -0.15 -7.01 16 17 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 20 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.10 1.19 6.47 -51.93 -0.34 0.85 16 27 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.11 0.77 7.87 -51.93 -0.41 0.36 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.40 5.05 8.27 -40.82 -0.34 4.72 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.39 10.31 7.67 -40.82 -0.31 10.00 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -32.86 333.29 -7.20 -40.05 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.17 Total: 8.21 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.12 Total: 3.83 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -0.03 Total: -63.10 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.12 Total: -11.26 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.86 -7.20 -40.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135020390.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.460 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds