Wall clock time and date at job start Tue Mar 31 2020 01:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37007 * 119.99832 * 2 1 4 4 H 1.07998 * 119.99881 * 185.48618 * 3 2 1 5 5 C 1.38949 * 120.00195 * 5.49214 * 3 2 1 6 6 N 1.31436 * 119.99851 * 5.50419 * 5 3 2 7 7 Si 1.86796 * 120.00232 * 185.50159 * 5 3 2 8 8 H 1.48501 * 109.47132 * 59.99868 * 7 5 3 9 9 H 1.48499 * 109.47463 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47032 * 300.00135 * 7 5 3 11 11 C 1.34774 * 119.99703 * 180.02562 * 2 1 3 12 12 O 1.21688 * 119.99387 * 185.95515 * 11 2 1 13 13 C 1.46850 * 120.00454 * 5.95397 * 11 2 1 14 14 C 1.41714 * 126.56908 * 53.51364 * 13 11 2 15 15 N 1.30558 * 108.19930 * 179.78771 * 14 13 11 16 16 N 1.39352 * 109.08094 * 0.31653 * 15 14 13 17 17 C 1.35173 * 108.46746 * 359.73171 * 16 15 14 18 18 O 1.35455 * 123.87506 * 180.02562 * 17 16 15 19 19 C 1.43532 * 115.05152 * 344.48005 * 18 17 16 20 20 C 1.53262 * 109.17734 * 46.92532 * 19 18 17 21 21 C 1.53001 * 109.50640 * 175.94314 * 20 19 18 22 22 C 1.52995 * 109.50627 * 55.80396 * 20 19 18 23 23 C 1.46799 * 127.98063 * 180.02562 * 16 15 14 24 24 H 1.09001 * 109.46935 * 175.05790 * 1 2 3 25 25 H 1.09000 * 109.46784 * 295.05193 * 1 2 3 26 26 H 1.08997 * 109.47507 * 55.05584 * 1 2 3 27 27 H 0.96994 * 120.00081 * 180.02562 * 6 5 3 28 28 H 1.08005 * 125.90290 * 0.02562 * 14 13 11 29 29 H 1.08997 * 109.52607 * 287.01456 * 19 18 17 30 30 H 1.09001 * 109.56887 * 166.86278 * 19 18 17 31 31 H 1.08998 * 109.47121 * 179.77741 * 21 20 19 32 32 H 1.08997 * 109.46807 * 299.77279 * 21 20 19 33 33 H 1.08992 * 109.47471 * 59.77008 * 21 20 19 34 34 H 1.08993 * 109.47666 * 300.22592 * 22 20 19 35 35 H 1.09005 * 109.47197 * 60.23219 * 22 20 19 36 36 H 1.09003 * 109.47045 * 180.22374 * 22 20 19 37 37 H 1.09001 * 109.75742 * 282.29375 * 23 16 15 38 38 H 1.08996 * 109.75720 * 43.00070 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1500 1.1865 0.0000 4 1 3.2263 1.1887 -0.0894 5 6 1.4601 2.3871 0.1152 6 7 0.1638 2.3819 0.3325 7 14 2.3747 4.0085 -0.0389 8 1 3.0159 4.0901 -1.3758 9 1 1.4187 5.1334 0.1216 10 1 3.4169 4.0911 1.0158 11 6 2.1389 -1.1672 -0.0005 12 8 3.3508 -1.1700 0.1088 13 6 1.4106 -2.4355 -0.1330 14 6 0.4895 -2.7775 -1.1542 15 7 0.0601 -3.9893 -0.9269 16 7 0.6634 -4.4767 0.2308 17 6 1.4915 -3.5247 0.7155 18 8 2.2376 -3.6723 1.8363 19 6 1.8506 -4.7635 2.6847 20 6 1.6482 -6.0190 1.8294 21 6 1.3342 -7.2102 2.7367 22 6 2.9222 -6.3047 1.0318 23 6 0.4789 -5.7893 0.8618 24 1 -0.3633 -1.0239 -0.0885 25 1 -0.3633 0.4352 0.9310 26 1 -0.3634 0.5886 -0.8423 27 1 -0.3179 3.2199 0.4126 28 1 0.1966 -2.1464 -1.9803 29 1 0.9195 -4.5161 3.1945 30 1 2.6319 -4.9474 3.4223 31 1 1.1865 -8.1019 2.1276 32 1 2.1651 -7.3728 3.4233 33 1 0.4277 -7.0045 3.3058 34 1 3.1458 -5.4546 0.3874 35 1 3.7523 -6.4679 1.7192 36 1 2.7762 -7.1954 0.4207 37 1 -0.4623 -5.8049 1.4113 38 1 0.4728 -6.5674 0.0985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154365876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:55 Heat of formation + Delta-G solvation = 27.565566 kcal Electronic energy + Delta-G solvation = -22580.443613 eV Core-core repulsion = 19233.168782 eV Total energy + Delta-G solvation = -3347.274831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69837 -38.92895 -37.71944 -36.17690 -34.45642 -32.12963 -31.25909 -29.39952 -27.70263 -26.97360 -26.49790 -25.90771 -24.31777 -22.07900 -21.15783 -19.43591 -18.62354 -17.65202 -16.76392 -16.32785 -15.87206 -15.27880 -15.26076 -14.90659 -14.43403 -14.22531 -13.89491 -13.57286 -13.28731 -13.00673 -12.87687 -12.53503 -12.40180 -12.26967 -11.73680 -11.49599 -11.47652 -11.29749 -11.19554 -10.91511 -10.86788 -10.65393 -10.32587 -10.32102 -10.05290 -8.93402 -8.80456 -8.35625 -7.76658 -7.67062 -6.11451 -3.66449 2.10794 2.41182 2.91213 3.23234 3.29841 3.30980 3.36242 3.90512 4.10729 4.18267 4.27231 4.43441 4.57563 4.92096 5.02305 5.06225 5.20253 5.24441 5.27901 5.30827 5.42785 5.46342 5.53364 5.59665 5.68184 5.79314 5.96365 6.02311 6.20732 6.43231 6.61661 6.91516 7.23930 7.55885 7.58297 7.68453 7.96238 8.22647 8.65200 9.33634 9.60606 10.18742 10.82808 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033938 B = 0.004654 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.840460 B = 6014.782997 C = 6300.515744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.441 5.441 3 C -0.293 4.293 4 H 0.103 0.897 5 C 0.024 3.976 6 N -0.889 5.889 7 Si 0.931 3.069 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.274 1.274 11 C 0.517 3.483 12 O -0.593 6.593 13 C -0.252 4.252 14 C 0.099 3.901 15 N -0.298 5.298 16 N -0.404 5.404 17 C 0.298 3.702 18 O -0.267 6.267 19 C 0.055 3.945 20 C -0.119 4.119 21 C -0.135 4.135 22 C -0.144 4.144 23 C 0.143 3.857 24 H 0.027 0.973 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.264 0.736 28 H 0.193 0.807 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.785 -17.348 3.846 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.159 5.159 3 C -0.421 4.421 4 H 0.121 0.879 5 C -0.177 4.177 6 N -0.531 5.531 7 Si 0.758 3.242 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.199 1.199 11 C 0.305 3.695 12 O -0.478 6.478 13 C -0.267 4.267 14 C -0.088 4.088 15 N -0.121 5.121 16 N -0.198 5.198 17 C 0.128 3.872 18 O -0.172 6.172 19 C -0.020 4.020 20 C -0.120 4.120 21 C -0.193 4.193 22 C -0.201 4.201 23 C 0.022 3.978 24 H 0.045 0.955 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.210 0.790 29 H 0.089 0.911 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.900 -18.063 3.727 18.670 hybrid contribution 0.526 1.282 0.314 1.421 sum -2.373 -16.782 4.041 17.424 Atomic orbital electron populations 1.21778 0.80292 0.96559 1.04060 1.43547 1.06045 1.04401 1.61906 1.19762 0.93536 0.82028 1.46812 0.87899 1.25298 0.95849 0.99604 0.96963 1.70171 1.06978 1.27007 1.48950 0.85914 0.78721 0.80502 0.79034 1.19937 1.21026 1.19944 1.16646 0.86478 0.81807 0.84605 1.90604 1.13913 1.86803 1.56502 1.19422 1.09931 0.96378 1.00999 1.23959 0.93837 0.92630 0.98347 1.76929 1.21996 1.13005 1.00164 1.48740 1.36470 1.12817 1.21801 1.19637 0.89936 0.89331 0.88256 1.86679 1.51410 1.49510 1.29622 1.23244 1.02785 0.84175 0.91835 1.21644 0.96476 0.97303 0.96605 1.21728 1.02502 0.96091 0.98956 1.21880 0.95495 1.02534 1.00240 1.21940 0.98358 0.81944 0.95572 0.95484 0.91057 0.92115 0.92501 0.79044 0.91095 0.86496 0.91354 0.91164 0.91749 0.91587 0.91454 0.91841 0.89687 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.83 8.60 59.85 0.51 3.34 16 2 N -0.44 -12.09 3.02 -123.61 -0.37 -12.47 16 3 C -0.29 -8.51 9.55 -14.98 -0.14 -8.66 16 4 H 0.10 3.11 7.20 -52.49 -0.38 2.73 16 5 C 0.02 0.65 5.42 -17.46 -0.09 0.56 16 6 N -0.89 -24.07 9.54 55.50 0.53 -23.54 16 7 Si 0.93 21.36 29.56 -169.99 -5.02 16.33 16 8 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 C 0.52 13.98 7.47 -12.78 -0.10 13.89 16 12 O -0.59 -18.07 16.71 5.20 0.09 -17.98 16 13 C -0.25 -5.63 4.81 -105.06 -0.50 -6.14 16 14 C 0.10 1.89 9.99 -16.77 -0.17 1.72 16 15 N -0.30 -5.29 12.54 30.97 0.39 -4.90 16 16 N -0.40 -6.61 3.92 -60.44 -0.24 -6.85 16 17 C 0.30 5.84 6.62 -16.06 -0.11 5.74 16 18 O -0.27 -4.94 10.04 -18.06 -0.18 -5.12 16 19 C 0.06 0.65 5.79 37.29 0.22 0.87 16 20 C -0.12 -1.13 0.78 -154.11 -0.12 -1.25 16 21 C -0.13 -0.79 8.46 37.16 0.31 -0.47 16 22 C -0.14 -1.52 8.19 37.16 0.30 -1.21 16 23 C 0.14 1.58 6.10 -3.62 -0.02 1.56 16 24 H 0.03 0.58 4.87 -51.93 -0.25 0.32 16 25 H 0.07 1.84 6.87 -51.93 -0.36 1.49 16 26 H 0.06 1.49 7.26 -51.93 -0.38 1.12 16 27 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 28 H 0.19 3.19 8.06 -52.48 -0.42 2.77 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.96 6.69 -51.93 -0.35 0.61 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 38 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 LS Contribution 310.84 15.07 4.68 4.68 Total: -1.00 -34.97 310.84 -5.10 -40.07 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.07 Total: -0.17 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 0.10 Total: 9.94 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.31 Total: -47.76 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.09 Total: -23.10 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.97 -5.10 -40.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154365876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.636 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds