Wall clock time and date at job start Tue Mar 31 2020 02:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34728 * 117.00004 * 2 1 4 4 O 1.21482 * 120.00284 * 0.02562 * 3 2 1 5 5 C 1.47700 * 119.99885 * 179.97438 * 3 2 1 6 6 C 1.39500 * 120.00438 * 180.02562 * 5 3 2 7 7 N 1.32012 * 119.97621 * 179.70011 * 6 5 3 8 8 C 1.32803 * 119.99143 * 0.53430 * 7 6 5 9 9 N 1.38373 * 119.99357 * 179.76192 * 8 7 6 10 10 C 1.46498 * 119.99848 * 0.02562 * 9 8 7 11 11 C 1.52996 * 109.47059 * 179.72327 * 10 9 8 12 12 C 1.53003 * 109.47301 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47008 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00362 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99653 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00157 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00386 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47111 * 89.99562 * 17 15 13 19 19 H 1.48494 * 109.47201 * 210.00305 * 17 15 13 20 20 H 1.48506 * 109.46710 * 330.00066 * 17 15 13 21 21 C 1.39878 * 120.01388 * 359.49119 * 8 7 6 22 22 C 1.50695 * 119.99144 * 180.25307 * 21 8 7 23 23 N 1.31454 * 120.02221 * 0.22676 * 21 8 7 24 24 H 1.08995 * 109.46954 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47097 * 300.00022 * 1 2 3 26 26 H 1.08999 * 109.47155 * 59.99708 * 1 2 3 27 27 H 1.08001 * 120.01642 * 0.02562 * 6 5 3 28 28 H 0.97001 * 119.99707 * 179.72133 * 9 8 7 29 29 H 1.09004 * 109.46963 * 299.72122 * 10 9 8 30 30 H 1.08994 * 109.47567 * 59.72275 * 10 9 8 31 31 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 32 32 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 33 33 H 1.08990 * 109.47021 * 299.99845 * 12 11 10 34 34 H 1.09002 * 109.46620 * 60.00037 * 12 11 10 35 35 H 0.96996 * 120.00642 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.47535 * 89.99750 * 22 21 8 37 37 H 1.09003 * 109.47442 * 209.99741 * 22 21 8 38 38 H 1.08998 * 109.47469 * 329.99863 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2193 0.0005 5 6 3.5387 1.2777 0.0006 6 6 4.1721 2.5206 0.0011 7 7 5.4904 2.5890 0.0076 8 6 6.2130 1.4748 0.0029 9 7 7.5949 1.5465 0.0047 10 6 8.2606 2.8515 0.0124 11 6 9.7773 2.6502 0.0199 12 6 10.4726 4.0131 0.0273 13 6 11.9665 3.8148 0.0353 14 1 12.3788 2.8166 0.0347 15 6 12.8069 4.9077 0.0423 16 7 14.1107 4.7348 0.0488 17 14 12.0939 6.6343 0.0426 18 1 11.8975 7.0885 1.4427 19 1 13.0293 7.5562 -0.6504 20 1 10.7880 6.6306 -0.6644 21 6 5.5775 0.2287 0.0018 22 6 6.3980 -1.0353 0.0022 23 7 4.2648 0.1599 0.0010 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 3.5842 3.4266 0.0015 28 1 8.1227 0.7327 0.0054 29 1 7.9728 3.4114 -0.8774 30 1 7.9633 3.4058 0.9025 31 1 10.0651 2.0902 0.9097 32 1 10.0747 2.0958 -0.8702 33 1 10.1848 4.5726 -0.8626 34 1 10.1753 4.5677 0.9173 35 1 14.7020 5.5036 0.0541 36 1 6.5948 -1.3405 1.0300 37 1 5.8498 -1.8245 -0.5124 38 1 7.3428 -0.8554 -0.5106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:29 Heat of formation + Delta-G solvation = -44.960050 kcal Electronic energy + Delta-G solvation = -20543.615893 eV Core-core repulsion = 17193.196116 eV Total energy + Delta-G solvation = -3350.419778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51160 -40.21874 -37.09391 -36.60973 -34.70396 -34.11819 -32.38363 -30.92253 -28.62871 -27.99820 -27.17557 -24.50898 -23.71618 -22.32692 -21.37089 -20.50665 -18.68121 -17.86800 -17.54141 -16.96985 -16.70469 -16.66031 -15.68892 -14.87939 -14.72703 -14.53165 -14.46834 -14.00962 -13.57622 -13.35048 -13.15519 -12.78467 -12.65240 -12.49144 -12.31911 -12.03494 -11.69511 -11.43227 -11.17148 -11.02655 -11.02458 -10.96169 -10.36256 -10.12276 -9.92606 -9.79673 -9.32636 -9.28778 -8.61504 -8.04586 -6.11987 -4.11430 0.33582 0.93123 2.25555 2.38092 2.88918 3.26620 3.34723 3.37640 3.57264 3.78184 4.07239 4.18994 4.38796 4.62775 4.81648 4.84102 4.91795 5.06581 5.21716 5.23666 5.26643 5.34535 5.39938 5.50301 5.66146 5.86387 5.89203 6.05684 6.30547 6.32478 6.62407 6.76172 6.82111 7.12859 7.23170 7.26446 7.56232 7.68903 7.73663 8.43410 8.91289 9.49753 11.01099 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036234 B = 0.002823 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.563511 B = 9917.449081 C =10653.635732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.339 6.339 3 C 0.539 3.461 4 O -0.510 6.510 5 C -0.058 4.058 6 C 0.182 3.818 7 N -0.506 5.506 8 C 0.394 3.606 9 N -0.685 5.685 10 C 0.115 3.885 11 C -0.116 4.116 12 C -0.009 4.009 13 C -0.524 4.524 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.902 5.902 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.264 1.264 21 C 0.020 3.980 22 C -0.095 4.095 23 N -0.356 5.356 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.181 0.819 28 H 0.415 0.585 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.264 0.736 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.945 -10.993 -0.135 25.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.254 6.254 3 C 0.383 3.617 4 O -0.398 6.398 5 C -0.196 4.196 6 C 0.019 3.981 7 N -0.228 5.228 8 C 0.149 3.851 9 N -0.314 5.314 10 C -0.007 4.007 11 C -0.154 4.154 12 C -0.047 4.047 13 C -0.562 4.562 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.540 5.540 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.137 4.137 22 C -0.153 4.153 23 N -0.072 5.072 24 H 0.120 0.880 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.198 0.802 28 H 0.254 0.746 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.925 -10.375 -0.133 25.164 hybrid contribution -0.227 0.789 0.023 0.821 sum -23.152 -9.586 -0.110 25.058 Atomic orbital electron populations 1.23311 0.76321 1.03778 1.02552 1.86680 1.23008 1.32007 1.83689 1.20426 0.87384 0.81622 0.72273 1.90854 1.65912 1.36055 1.46936 1.20387 0.91404 0.91259 1.16555 1.23482 0.89579 0.97668 0.87386 1.68324 1.06184 1.28451 1.19872 1.19608 0.87166 0.90297 0.88007 1.45126 1.01112 1.11193 1.73942 1.21844 0.93721 0.82679 1.02491 1.21742 0.90255 1.01463 1.01903 1.19485 0.96560 0.91958 0.96729 1.21069 0.88775 0.94987 1.51373 0.90998 1.25034 0.94728 0.99301 0.94411 1.69906 1.02459 1.30901 1.50747 0.86772 0.79417 0.84471 0.78612 1.20227 1.21331 1.18897 1.21692 0.90421 0.94699 1.06864 1.20594 0.98029 0.93169 1.03533 1.67968 1.05637 1.30039 1.03551 0.87980 0.91834 0.91840 0.80208 0.74594 0.91215 0.91206 0.91971 0.91960 0.96248 0.96686 0.92630 0.89999 0.89651 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.57 101.05 1.07 1.32 16 2 O -0.34 -3.88 10.39 -40.57 -0.42 -4.30 16 3 C 0.54 6.87 7.94 34.60 0.27 7.15 16 4 O -0.51 -7.04 16.12 -19.25 -0.31 -7.35 16 5 C -0.06 -0.76 6.74 -82.90 -0.56 -1.32 16 6 C 0.18 2.29 10.76 -17.00 -0.18 2.10 16 7 N -0.51 -7.02 9.70 -11.94 -0.12 -7.14 16 8 C 0.39 5.05 7.46 -155.01 -1.16 3.89 16 9 N -0.69 -8.24 5.59 -60.29 -0.34 -8.58 16 10 C 0.12 1.68 5.69 -4.04 -0.02 1.66 16 11 C -0.12 -1.98 5.27 -26.73 -0.14 -2.12 16 12 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 13 C -0.52 -14.30 9.66 -34.44 -0.33 -14.63 16 14 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 15 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 17 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 21 C 0.02 0.23 6.82 -82.14 -0.56 -0.33 16 22 C -0.10 -0.76 9.75 36.00 0.35 -0.41 16 23 N -0.36 -4.61 10.18 -5.74 -0.06 -4.67 16 24 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.18 1.92 7.63 -52.49 -0.40 1.52 16 28 H 0.41 4.01 6.45 -40.82 -0.26 3.74 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 34 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.49 6.56 -51.93 -0.34 0.14 16 LS Contribution 329.31 15.07 4.96 4.96 Total: -1.00 -32.57 329.31 -6.81 -39.38 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.16 Total: -1.19 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.47 Total: -1.22 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.26 Total: -46.79 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.73 Total: -11.66 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.57 -6.81 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.584 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds