Wall clock time and date at job start Tue Mar 31 2020 01:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34864 * 119.09677 * 2 1 4 4 C 1.41671 * 119.33414 * 180.27534 * 3 2 1 5 5 O 1.22093 * 121.06838 * 179.76654 * 4 3 2 6 6 C 1.47107 * 117.86617 * 359.49941 * 4 3 2 7 7 C 1.47291 * 120.88132 * 180.22898 * 6 4 3 8 8 O 1.21619 * 119.99850 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99319 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99288 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47009 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47166 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.46883 * 179.97438 * 12 11 10 14 14 C 1.36943 * 119.99644 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99643 * 180.02562 * 14 13 12 17 17 N 1.31615 * 119.99879 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00273 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46860 * 90.00406 * 18 16 14 20 20 H 1.48495 * 109.47515 * 210.00192 * 18 16 14 21 21 H 1.48504 * 109.47098 * 330.00689 * 18 16 14 22 22 C 1.37986 * 118.23326 * 0.24333 * 6 4 3 23 23 N 1.34347 * 120.37381 * 0.02562 * 22 6 4 24 24 H 0.96993 * 118.80752 * 179.97438 * 23 22 6 25 25 H 1.08996 * 109.46928 * 270.23680 * 1 2 3 26 26 H 1.08998 * 109.46978 * 30.24240 * 1 2 3 27 27 H 1.08999 * 109.46949 * 150.23952 * 1 2 3 28 28 H 1.07994 * 120.33853 * 0.02562 * 3 2 1 29 29 H 0.96991 * 120.00801 * 359.97438 * 9 7 6 30 30 H 1.09001 * 109.47012 * 299.99818 * 10 9 7 31 31 H 1.08995 * 109.47667 * 59.99703 * 10 9 7 32 32 H 1.09002 * 109.46657 * 300.00098 * 11 10 9 33 33 H 1.09003 * 109.47000 * 59.99656 * 11 10 9 34 34 H 1.09002 * 109.47636 * 299.99772 * 12 11 10 35 35 H 1.09003 * 109.47218 * 60.00063 * 12 11 10 36 36 H 0.96996 * 120.00238 * 0.02562 * 13 12 11 37 37 H 0.97004 * 120.00510 * 179.97438 * 17 16 14 38 38 H 1.08003 * 119.81035 * 179.97438 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1843 -0.0059 5 8 4.2053 2.2327 -0.0104 6 6 4.2726 -0.1133 -0.0005 7 6 5.7437 -0.1846 -0.0011 8 8 6.4021 0.8379 -0.0066 9 7 6.3601 -1.3832 0.0044 10 6 7.8235 -1.4541 0.0032 11 6 8.2630 -2.9197 0.0097 12 6 9.7911 -2.9938 0.0078 13 7 10.2119 -4.3971 0.0146 14 6 11.5446 -4.7123 0.0138 15 1 12.2853 -3.9263 0.0085 16 6 11.9433 -6.0419 0.0197 17 7 13.2241 -6.3448 0.0194 18 14 10.6620 -7.4012 0.0295 19 1 10.3195 -7.7686 -1.3679 20 1 11.2063 -8.5895 0.7344 21 1 9.4416 -6.9261 0.7298 22 6 3.5077 -1.2618 0.0049 23 7 2.1665 -1.1847 0.0046 24 1 1.6511 -2.0064 0.0080 25 1 -0.3633 0.0042 1.0276 26 1 -0.3633 0.8878 -0.5176 27 1 -0.3633 -0.8921 -0.5101 28 1 1.6137 2.1083 0.0004 29 1 5.8351 -2.1986 0.0092 30 1 8.2103 -0.9631 -0.8897 31 1 8.2123 -0.9539 0.8901 32 1 7.8761 -3.4110 0.9024 33 1 7.8742 -3.4195 -0.8775 34 1 10.1777 -2.5026 -0.8851 35 1 10.1803 -2.4939 0.8948 36 1 9.5466 -5.1029 0.0190 37 1 13.5028 -7.2740 0.0239 38 1 3.9901 -2.2281 0.0085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170083031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:17 Heat of formation + Delta-G solvation = -65.469498 kcal Electronic energy + Delta-G solvation = -20428.668444 eV Core-core repulsion = 17077.359310 eV Total energy + Delta-G solvation = -3351.309134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.01868 -40.30809 -38.78172 -37.56131 -35.93766 -34.46775 -33.74813 -32.62254 -31.47534 -29.05107 -26.96762 -25.13400 -24.12966 -23.11521 -22.69213 -21.99245 -20.05683 -19.45171 -18.56868 -17.31621 -17.19245 -16.88031 -16.83785 -16.38763 -16.28083 -15.77306 -15.39897 -15.35923 -14.80949 -14.47467 -14.45843 -13.94840 -13.89152 -13.79810 -13.68481 -13.40205 -13.03803 -12.85721 -12.52269 -12.49804 -12.07208 -11.98841 -11.79340 -11.20689 -10.96741 -10.50410 -10.34237 -10.11258 -9.31354 -9.20041 -8.01974 -5.37711 -0.18760 0.34492 1.39070 1.46336 1.53726 1.77697 1.89514 2.11285 2.51117 2.79685 3.28809 3.33998 3.55339 3.64830 3.72151 3.97849 4.10012 4.14609 4.26658 4.33546 4.42264 4.72034 4.72902 4.74937 4.79776 4.82219 4.92198 5.20309 5.24876 5.30270 5.33544 5.42244 5.68166 5.75488 6.10854 6.21137 6.63013 7.08275 7.09817 7.34984 7.81668 8.04829 9.19671 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031139 B = 0.002743 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.973732 B =10203.994092 C =11071.915896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.193 3.807 3 C -0.305 4.305 4 C 0.380 3.620 5 O -0.569 6.569 6 C -0.357 4.357 7 C 0.564 3.436 8 O -0.584 6.584 9 N -0.711 5.711 10 C 0.131 3.869 11 C -0.117 4.117 12 C 0.152 3.848 13 N -0.756 5.756 14 C -0.244 4.244 15 H 0.049 0.951 16 C -0.072 4.072 17 N -0.987 5.987 18 Si 0.968 3.032 19 H -0.275 1.275 20 H -0.297 1.297 21 H -0.241 1.241 22 C 0.233 3.767 23 N -0.548 5.548 24 H 0.452 0.548 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.111 0.889 28 H 0.152 0.848 29 H 0.415 0.585 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.022 0.978 35 H 0.021 0.979 36 H 0.371 0.629 37 H 0.259 0.741 38 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.525 3.277 0.066 38.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.085 3.915 3 C -0.328 4.328 4 C 0.273 3.727 5 O -0.458 6.458 6 C -0.367 4.367 7 C 0.354 3.646 8 O -0.464 6.464 9 N -0.366 5.366 10 C 0.006 3.994 11 C -0.155 4.155 12 C 0.025 3.975 13 N -0.402 5.402 14 C -0.375 4.375 15 H 0.067 0.933 16 C -0.262 4.262 17 N -0.637 5.637 18 Si 0.794 3.206 19 H -0.201 1.201 20 H -0.224 1.224 21 H -0.165 1.165 22 C 0.098 3.902 23 N -0.154 5.154 24 H 0.295 0.705 25 H 0.127 0.873 26 H 0.116 0.884 27 H 0.129 0.871 28 H 0.169 0.831 29 H 0.254 0.746 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.205 0.795 37 H 0.067 0.933 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -37.559 4.618 0.062 37.842 hybrid contribution 0.324 -0.927 0.002 0.982 sum -37.235 3.691 0.063 37.417 Atomic orbital electron populations 1.21303 0.83988 1.06818 1.06054 1.20744 0.96793 0.84369 0.89622 1.22124 0.93971 0.99685 1.17044 1.19053 0.90462 0.88020 0.75183 1.90786 1.71806 1.35848 1.47356 1.22111 0.93054 0.96477 1.25086 1.18057 0.87590 0.83222 0.75762 1.90830 1.67627 1.36495 1.51434 1.45624 1.07195 1.07810 1.75977 1.21062 0.79839 0.96911 1.01544 1.21739 0.94524 0.94825 1.04456 1.20657 0.93866 0.84711 0.98262 1.42598 1.03056 1.03462 1.91116 1.19041 0.83925 0.92482 1.42050 0.93330 1.25713 0.98360 0.99995 1.02180 1.69922 1.16214 1.18244 1.59346 0.85224 0.79210 0.77901 0.78291 1.20070 1.22424 1.16467 1.22713 0.83165 0.99687 0.84673 1.41002 1.05438 1.10144 1.58857 0.70524 0.87309 0.88433 0.87055 0.83068 0.74642 0.92711 0.92741 0.89300 0.89187 0.96000 0.96100 0.79532 0.93259 0.76063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.60 10.03 71.24 0.71 1.31 16 2 C 0.19 0.78 6.79 41.20 0.28 1.06 16 3 C -0.30 -5.06 9.57 22.34 0.21 -4.85 16 4 C 0.38 11.22 6.97 25.45 0.18 11.39 16 5 O -0.57 -24.81 16.41 13.52 0.22 -24.59 16 6 C -0.36 -7.85 6.05 -18.63 -0.11 -7.96 16 7 C 0.56 16.94 7.77 86.62 0.67 17.61 16 8 O -0.58 -25.81 15.57 15.05 0.23 -25.58 16 9 N -0.71 -14.80 5.51 -466.49 -2.57 -17.37 16 10 C 0.13 3.45 5.67 86.38 0.49 3.94 16 11 C -0.12 -2.91 5.44 30.59 0.17 -2.75 16 12 C 0.15 5.68 6.26 86.38 0.54 6.22 16 13 N -0.76 -34.65 5.41 -343.44 -1.86 -36.50 16 14 C -0.24 -14.16 10.47 84.03 0.88 -13.28 16 15 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 16 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 17 N -0.99 -63.88 13.97 21.65 0.30 -63.58 16 18 Si 0.97 43.76 27.73 68.60 1.90 45.66 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 21 H -0.24 -9.31 6.52 99.48 0.65 -8.66 16 22 C 0.23 1.19 10.74 84.25 0.90 2.09 16 23 N -0.55 0.68 5.16 -182.38 -0.94 -0.26 16 24 H 0.45 -5.24 8.70 -92.71 -0.81 -6.05 16 25 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 26 H 0.10 -0.36 8.06 -2.39 -0.02 -0.38 16 27 H 0.11 -1.15 8.12 -2.39 -0.02 -1.17 16 28 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 29 H 0.42 4.02 6.55 -92.72 -0.61 3.42 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.37 15.30 5.53 -92.71 -0.51 14.79 16 37 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 38 H 0.22 -1.18 6.42 -2.91 -0.02 -1.20 16 Total: -1.00 -108.10 326.55 1.81 -106.29 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -0.87 Total: 4.88 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 5.39 Total: 11.05 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -5.07 Total: -117.71 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: 0.46 Total: -50.16 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.90 Total: 45.66 kcal Total: -108.10 1.81 -106.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170083031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.819 kcal (2) G-P(sol) polarization free energy of solvation -108.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds